Nicole Kirk

ORCID: 0000-0002-3609-5502
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About
Contact & Profiles
Research Areas
  • Lung Cancer Research Studies
  • Peptidase Inhibition and Analysis
  • Signaling Pathways in Disease
  • Cancer Mechanisms and Therapy
  • Insect and Arachnid Ecology and Behavior
  • Neurobiology and Insect Physiology Research
  • Plant and Biological Electrophysiology Studies
  • Immune Cell Function and Interaction
  • Cancer-related gene regulation
  • T-cell and B-cell Immunology
  • Chromatin Remodeling and Cancer
  • Hearing Loss and Rehabilitation
  • Noise Effects and Management
  • Axon Guidance and Neuronal Signaling
  • Growth Hormone and Insulin-like Growth Factors
  • Mechanisms of cancer metastasis
  • Muscle metabolism and nutrition
  • American History and Culture
  • RNA modifications and cancer
  • Genetics, Aging, and Longevity in Model Organisms
  • Asthma and respiratory diseases
  • Exercise and Physiological Responses
  • Mormonism, Religion, and History
  • Cytomegalovirus and herpesvirus research
  • Veterinary Equine Medical Research

University of Virginia
2019-2023

Purdue University West Lafayette
2021-2022

University of Florida
2021

Janelia Research Campus
2020

Howard Hughes Medical Institute
2020

C. Shan Xu Michał Januszewski Zhiyuan Lu Shin-ya Takemura Kenneth J. Hayworth and 95 more Gary B. Huang Kazunori Shinomiya Jeremy Maitin-Shepard David Ackerman Stuart Berg Tim Blakely John Bogovic Jody Clements Tom Dolafi Philip M. Hubbard Dagmar Kainmueller William Katz Takashi Kawase Khaled Khairy Laramie Leavitt Peter H. Li Larry F. Lindsey Nicole Neubarth Donald J. Olbris Hideo Otsuna Eric T. Troutman Lowell Umayam Ting Zhao Masayoshi Ito Jens Goldammer Tanya Wolff Robert Svirskas Philipp Schlegel Erika Neace Christopher Knecht Chelsea X. Alvarado Dennis Bailey Samantha Ballinger J Borycz Brandon S Canino Natasha Cheatham Michael Cook Marisa Dreher Octave Duclos Bryon Eubanks Kelli Fairbanks Samantha Finley-May Nora Forknall Audrey Francis Gary Patrick Hopkins Emily Joyce SungJin Kim Nicole Kirk Julie Kovalyak Shirley A Lauchie Alanna Lohff Charli Maldonado Emily A Manley Sari McLin Caroline Mooney Miatta Ndama Omotara Ogundeyi Nneoma Okeoma Christopher Ordish Nicholas Padilla Christopher Patrick Tyler Paterson Elliott Phillips Emily M Phillips Neha Rampally Caitlin Ribeiro Madelaine K Robertson Jon Thomson Rymer Sean M Ryan Megan Sammons Anne K Scott Ashley L Scott Aya Shinomiya Claire Smith Kelsey Smith Natalie Smith Margaret A. Sobeski Alia Suleiman Jackie Swift Satoko Takemura Iris Talebi Dorota Tarnogorska Emily Tenshaw Temour Tokhi John J Walsh Tansy Yang Jane Anne Horne Feng Li Ruchi Parekh Patricia K. Rivlin Vivek Jayaraman Kei Ito Stephan Saalfeld Reed George Ian A. Meinertzhagen

Abstract The neural circuits responsible for behavior remain largely unknown. Previous efforts have reconstructed the complete of small animals, with hundreds neurons, and selected larger animals. Here we (the FlyEM project at Janelia collaborators Google) summarize new methods present circuitry a large fraction brain much more complex animal, fruit fly Drosophila melanogaster . Improved include procedures to prepare, image, align, segment, find synapses, proofread such data sets; that...

10.1101/2020.01.21.911859 preprint EN cc-by-nd bioRxiv (Cold Spring Harbor Laboratory) 2020-01-21
Louis K. Scheffer C. Shan Xu Michał Januszewski Zhiyuan Lu Shin-ya Takemura and 95 more Kenneth J. Hayworth Gary B. Huang Kazunori Shinomiya Jeremy Maitin-Shepard Stuart Berg Jody Clements Philip M. Hubbard William Katz Lowell Umayam Ting Zhao David Ackerman Tim Blakely John Bogovic Tom Dolafi Dagmar Kainmueller Takashi Kawase Khaled Khairy Laramie Leavitt Peter H. Li Larry F. Lindsey Nicole Neubarth Donald J. Olbris Hideo Otsuna Eric T. Trautman Masayoshi Ito Jens Goldammer Tanya Wolff Robert Svirskas Philipp Schlegel Erika Neace Christopher J Knecht Chelsea X. Alvarado Dennis Bailey Samantha Ballinger J Borycz Brandon S Canino Natasha Cheatham Michael Cook Marisa Dreher Octave Duclos Bryon Eubanks Kelli Fairbanks Samantha Finley-May Nora Forknall Audrey Francis Gary Patrick Hopkins Emily Joyce Sungjin Kim Nicole Kirk Julie Kovalyak Shirley A Lauchie Alanna Lohff Charli Maldonado Emily A Manley Sari McLin Caroline Mooney Miatta Ndama Omotara Ogundeyi Nneoma Okeoma Christopher Ordish Nicholas Padilla Christopher Patrick Tyler Paterson Elliott Phillips Emily M Phillips Neha Rampally Caitlin Ribeiro Madelaine K Robertson Jon Thomson Rymer Sean M Ryan Megan Sammons Anne K Scott Ashley L Scott Aya Shinomiya Claire Smith Kelsey Smith Natalie Smith Margaret A. Sobeski Alia Suleiman Jackie Swift Satoko Takemura Iris Talebi Dorota Tarnogorska Emily Tenshaw Temour Tokhi John J Walsh Tansy Yang Jane Anne Horne Feng Li Ruchi Parekh Patricia K. Rivlin Vivek Jayaraman Kei Ito Stephan Saalfeld Reed George

Abstract The neural circuits responsible for animal behavior remain largely unknown. We summarize new methods and present the circuitry of a large fraction brain fruit fly Drosophila melanogaster. Improved include procedures to prepare, image, align, segment, find synapses in, proofread such data sets. define cell types, refine computational compartments, provide an exhaustive atlas examples many them novel. detailed consisting neurons their chemical most central brain. make public simplify...

10.1101/2020.04.07.030213 preprint EN cc-by bioRxiv (Cold Spring Harbor Laboratory) 2020-04-09

Human rhinoviruses cause the common cold and exacerbate chronic respiratory diseases. Although infection elicits neutralizing antibodies, these do not persist or cross-protect across multiple rhinovirus strains. To analyze rhinovirus-specific B cell responses in humans, we developed techniques using intact RV-A16 RV-A39 for high-throughput high-dimensional single-cell analysis, with parallel assessment of antibody isotypes an experimental model. Our approach identified T-bet+ cells binding...

10.1016/j.celrep.2019.12.027 article EN cc-by-nc-nd Cell Reports 2020-01-01

Abstract WNT signaling represents an attractive target for cancer therapy due to its widespread oncogenic role. However, the molecular players involved in and impact of their perturbation remain unknown numerous recalcitrant cancers. Here, we characterize pathway activity small cell lung (SCLC) determine functional role using genetically engineered mouse models. β-Catenin, a master mediator canonical signaling, was dispensable SCLC development, transcriptional program largely silenced during...

10.1158/0008-5472.can-22-1170 article EN Cancer Research 2022-09-14

Abstract Small cell lung cancer (SCLC) is aggressive with limited therapeutic options. Despite recent advances in targeted therapies and immunotherapies, therapy resistance a recurring issue, which might be partly due to tumor plasticity, change fate. Nonetheless, the mechanisms underlying plasticity immune evasion SCLC remain elusive. CRACD, capping protein inhibitor that promotes actin polymerization, frequently inactivated SCLC. Cracd knockout (KO) transforms preneoplastic cells into...

10.1101/2023.02.15.528365 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2023-02-15

<div>Abstract<p>WNT signaling represents an attractive target for cancer therapy due to its widespread oncogenic role. However, the molecular players involved in WNT and impact of their perturbation remain unknown numerous recalcitrant cancers. Here, we characterize pathway activity small cell lung (SCLC) determine functional role using genetically engineered mouse models. β-Catenin, a master mediator canonical signaling, was dispensable SCLC development, transcriptional program...

10.1158/0008-5472.c.6514256.v1 preprint EN 2023-03-31

Supplementary Data from WNT5A–RHOA Signaling Is a Driver of Tumorigenesis and Represents Therapeutically Actionable Vulnerability in Small Cell Lung Cancer

10.1158/0008-5472.22432865 preprint EN cc-by 2023-03-31

Supplementary Data from WNT5A–RHOA Signaling Is a Driver of Tumorigenesis and Represents Therapeutically Actionable Vulnerability in Small Cell Lung Cancer

10.1158/0008-5472.22432868 preprint EN cc-by 2023-03-31

Supplementary Data from WNT5A–RHOA Signaling Is a Driver of Tumorigenesis and Represents Therapeutically Actionable Vulnerability in Small Cell Lung Cancer

10.1158/0008-5472.22432859 preprint EN cc-by 2023-03-31

Supplementary Data from WNT5A–RHOA Signaling Is a Driver of Tumorigenesis and Represents Therapeutically Actionable Vulnerability in Small Cell Lung Cancer

10.1158/0008-5472.22432874 preprint EN cc-by 2023-03-31

Supplementary Data from WNT5A–RHOA Signaling Is a Driver of Tumorigenesis and Represents Therapeutically Actionable Vulnerability in Small Cell Lung Cancer

10.1158/0008-5472.22432877 preprint EN cc-by 2023-03-31

Supplementary Data from WNT5A–RHOA Signaling Is a Driver of Tumorigenesis and Represents Therapeutically Actionable Vulnerability in Small Cell Lung Cancer

10.1158/0008-5472.22432862 preprint EN cc-by 2023-03-31

Supplementary Figure from WNT5A–RHOA Signaling Is a Driver of Tumorigenesis and Represents Therapeutically Actionable Vulnerability in Small Cell Lung Cancer

10.1158/0008-5472.22432850 preprint EN cc-by 2023-03-31

Supplementary Data from WNT5A–RHOA Signaling Is a Driver of Tumorigenesis and Represents Therapeutically Actionable Vulnerability in Small Cell Lung Cancer

10.1158/0008-5472.22432853 preprint EN cc-by 2023-03-31

Supplementary Data from WNT5A–RHOA Signaling Is a Driver of Tumorigenesis and Represents Therapeutically Actionable Vulnerability in Small Cell Lung Cancer

10.1158/0008-5472.22432871 preprint EN cc-by 2023-03-31

Supplementary Data from WNT5A–RHOA Signaling Is a Driver of Tumorigenesis and Represents Therapeutically Actionable Vulnerability in Small Cell Lung Cancer

10.1158/0008-5472.22432856 preprint EN cc-by 2023-03-31

Supplementary Data from WNT5A–RHOA Signaling Is a Driver of Tumorigenesis and Represents Therapeutically Actionable Vulnerability in Small Cell Lung Cancer

10.1158/0008-5472.22432859.v1 preprint EN cc-by 2023-03-31
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