Nilesh Deshpande

ORCID: 0000-0002-3912-089X
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About
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Research Areas
  • Immune cells in cancer
  • Acute Lymphoblastic Leukemia research
  • Acute Myeloid Leukemia Research
  • Pancreatic and Hepatic Oncology Research
  • Nanoplatforms for cancer theranostics
  • Neutrophil, Myeloperoxidase and Oxidative Mechanisms
  • Multiple Myeloma Research and Treatments
  • Phagocytosis and Immune Regulation
  • Lymphoma Diagnosis and Treatment
  • Chronic Lymphocytic Leukemia Research
  • Nanoparticle-Based Drug Delivery
  • Chronic Myeloid Leukemia Treatments
  • Cell Adhesion Molecules Research
  • Cancer Immunotherapy and Biomarkers
  • Inflammatory Biomarkers in Disease Prognosis
  • Myeloproliferative Neoplasms: Diagnosis and Treatment
  • Hematopoietic Stem Cell Transplantation
  • Extracellular vesicles in disease
  • Advanced biosensing and bioanalysis techniques
  • interferon and immune responses
  • Chemokine receptors and signaling
  • Cancer Genomics and Diagnostics
  • Protein Degradation and Inhibitors
  • CAR-T cell therapy research
  • Cancer Research and Treatments

Advanced Centre for Treatment, Research and Education in Cancer
2018-2024

Tata Memorial Hospital
2016-2024

Homi Bhabha National Institute
2019-2024

University of Miami
2021-2024

Indian Institute of Science Education and Research Pune
2015-2024

University of Massachusetts Amherst
2020-2023

John Wiley & Sons (United States)
2021

Savitribai Phule Pune University
2006-2020

Istituto Nazionale di Fisica Nucleare, Sezione di Milano
2018

National University of Singapore
2007

Abstract We have shown that KRAS–TP53 genomic coalteration is associated with immune-excluded microenvironments, chemoresistance, and poor survival in pancreatic ductal adenocarcinoma (PDAC) patients. By treating cooperativity as a model for high-risk biology, we now identify cell-autonomous Cxcl1 key mediator of spatial T-cell restriction via interactions CXCR2+ neutrophilic myeloid-derived suppressor cells human PDAC using imaging mass cytometry. Silencing cell-intrinsic...

10.1158/2159-8290.cd-22-1046 article EN Cancer Discovery 2023-03-22

Abstract We accrued 201 patients of adult AML treated with conventional therapy, in morphological remission, and evaluated MRD using sensitive error-corrected next generation sequencing (NGS-MRD) multiparameter flow cytometry (FCM-MRD) at the end induction (PI) consolidation (PC). Nearly 71% were PI NGS-MRD + 40.9% PC (median VAF 0.76%). had a significantly higher cumulative incidence relapse ( p = 0.003), inferior overall survival 0.001) free < as compared to − patients. was predictive...

10.1038/s41375-021-01131-6 article EN cc-by Leukemia 2021-02-08

Flow-cytometric minimal residual disease (FC-MRD) monitoring is a well-established risk-stratification factor in B-lymphoblastic leukemia/lymphoma (-B-ALL) and being considered as basis for deintensification or escalation treatment protocols. However, currently practiced standard FC-MRD has limited sensitivity (up to 0.01%) higher false MRD-negative rate. Hence, highly sensitive, widely applicable, easily reproducible assay needed, which can provide reliable therapeutic modifications.A...

10.1002/cyto.b.21831 article EN Cytometry Part B Clinical Cytometry 2019-06-14

Multiparametric flow cytometry (MFC) is a popular technique for minimal residual disease (MRD) analysis. However, its applicability still limited to 90% of B-cell precursor acute lymphoblastic leukemia (BCPALL) due two major issues, i.e. proportion cases do not express adequate associated immunophenotype (LAIPs) with currently used markers and drug-induced antigen modulation. Hence, the incorporation additional reliable required further improvement MFC-based MRD evaluation. We studied...

10.1002/cyto.b.21486 article EN Cytometry Part B Clinical Cytometry 2016-10-13

Biotin-conjugated multistimuli-responsive polysaccharide vesicular nanocarriers are designed and developed, for the first time, to accomplish receptor-mediated endocytosis in cancer cells deliver anticancer drugs intracellular compartments. For this purpose, a new renewable hydrophobic unit was custom with redox-degradable disulfide enzyme-biodegradable aliphatic ester chemical linkages, it conjugated along biotin on dextran backbone. The derivative self-assembled into nanovesicles of <200...

10.1021/acs.biomac.8b00833 article EN Biomacromolecules 2018-06-15

New cisplatin-stitched polysaccharide vesicular nanocarrier is developed for combination therapy of three clinical important antagonistic drugs together to accomplish synergistic cancer in breast treatment. Carboxylic functionalized dextran was tailor-made the chemical conjugation cisplatin, and a renewable hydrophobic unit anchored backbone interdigitize chains self-assemble as nanovesicles. Water-soluble DNA-intercalating drug doxorubicin·HCl (DOX) water insoluble topoisomerase type I...

10.1021/acs.biomac.6b01411 article EN Biomacromolecules 2016-11-22

Partial/complete pathologic response following neoadjuvant chemotherapy (NAC) in pancreatic cancer (PDAC) patients undergoing pancreatectomy is associated with improved survival. We sought to determine whether neutrophil-to-lymphocyte ratio (NLR) dynamics predict PDAC, and if manipulating NLR impacts chemosensitivity preclinical models uncovers potential mechanistic underpinnings underlying these effects. Pathologic PDAC (n=94) NAC (7/2015-12/2019) was dichotomized as partial/complete or...

10.7554/elife.78921 article EN cc-by eLife 2022-09-14

The analysis of expressed sequence tag (EST) datasets offers a rapid and cost-effective approach to elucidate the transcriptome an organism, but requiring several computational methods for assembly annotation. ESTExplorer is comprehensive workflow system EST data management analysis. pipeline uses 'distributed control approach' in which most appropriate bioinformatics tools are implemented over different dedicated processors. Species-specific repeat masking conceptual translation in-built....

10.1093/nar/gkm378 article EN cc-by-nc Nucleic Acids Research 2007-05-08

Background Recently, anti-CD38 monoclonal antibody (Mab) therapy has become a focus of attention as an additional/alternative option for many hematological neoplasms including T-cell acute lymphoblastic leukemia (T-ALL). It been shown that antitumor efficacy anti-CD38-Mab depends on the level CD38 expression tumor cells. Reports in T-ALL are scarce, and data effect cytotoxic chemotherapy limited to very few samples. Moreover, it lacks entirely refractory disease adult T-ALL. We report flow...

10.1136/jitc-2020-000630 article EN cc-by-nc Journal for ImmunoTherapy of Cancer 2020-05-01

An enzyme-responsive FRET nanoprobe was designed and developed based on AIE-driven fluorescent polysaccharide polymersomes to study the real-time delivery aspects in intracellular compartments live cancer cells.

10.1039/d0py01085e article EN Polymer Chemistry 2020-12-18

Background: Measurable/minimal residual disease (MRD) status is suggested as a powerful indicator of clinical-outcome in T-cell lymphoblastic leukemia/lymphoma (T-ALL). Contrary to B-cell ALL, reports on T-ALL MRD are limited and mostly based molecular methods, mainly from developed countries. Multicolor flow cytometry (MFC)-based studies very few. Clinically relevant cut-off levels ideal time-point for assessment still inconclusive. In view lack data the developing world, we evaluated...

10.3389/fonc.2020.00577 article EN cc-by Frontiers in Oncology 2020-04-24

The accurate estimation of drug release kinetics polymeric vehicles is an indispensable prerequisite for the developments successful carriers cancer therapy. present investigation reports development time-resolved fluorescence spectroscopic approach real-time fluorophore loaded polysaccharide vesicles that are potential vectors in treatment. were custom designed with appropriate enzyme and pH responsiveness water-soluble biocompatible Rhodamine B (Rh-B). semipermeable membrane dialysis...

10.1021/acs.jpcb.5b05795 article EN The Journal of Physical Chemistry B 2015-08-03

Measurable/minimal residual disease (MRD) status has been suggested as a powerful indicator of clinical-outcome in T-cell lymphoblastic leukemia/lymphoma (T-ALL). Multicolor flow cytometric (MFC)-based T-ALL MRD reports are limited and traditionally based on the utilization markers-of-immaturity like TdT CD99. Moreover, studies demonstrating multicolor (MFC) approach for assessment sparse. Herein, we describe an 11-marker, 10-color MFC-based method using "approach exclusion."The study...

10.1002/cyto.b.21939 article EN Cytometry Part B Clinical Cytometry 2020-08-19

Multicolor flow cytometry (MFC) is crucial in detecting occult or minimal bone marrow (BM) involvement by non-Hodgkin lymphomas (NHL), which may not be detected using trephine biopsy imaging studies. Detection of low-level BM can challenging without definite immunophenotypic aberrancies. We studied the utility CD305 MFC detection B-NHL, especially absence aberrancies commonly used markers. The study included 1084 consecutive samples submitted for staging B-NHLs (excluding CLL) over two...

10.1002/cyto.b.22193 article EN cc-by-nc-nd Cytometry Part B Clinical Cytometry 2024-06-21

Abstract Introduction In 2016, Children Oncology Group (COG) described a new high‐risk subtype of acute myeloid leukemia (AML) with distinct immunophenotypic‐signature, RAM‐phenotype (RAM‐AML). Data on clinical and laboratory features RAM‐AML are still limited to COG report only. Herein, we the clinicopathological characteristics detailed immunophenotypic patients. report, 38% belonged megakaryoblastic (AMKL)‐subtype. Hence, further compared non‐RAM‐AMKL diagnosed during same study period....

10.1002/cyto.b.21943 article EN Cytometry Part B Clinical Cytometry 2020-08-31

Measurable residual disease (MRD) assessment using multicolor flow cytometry (MFC) has become the center point of pediatric B-cell precursor acute lymphoblastic leukemia (BCP-ALL) risk stratification and therapeutic management. The addition new markers can improve accuracy applicability MFC-based MRD assay further. Herein, we evaluated utility a marker, CD304/neuropilin-1, in MRD.Expression patterns CD304 were studied leukemic blasts from BCP-ALL patients normal B cells (NPBC) uninvolved...

10.1002/cyto.b.21866 article EN Cytometry Part B Clinical Cytometry 2020-01-16

T-cell/NK-cell non-Hodgkin's lymphoma (T/NK-NHL) is an uncommon heterogeneous group of diseases. The current classification T/NK-NHL mainly based on histopathology and immunohistochemistry. In practice, however, the lack unique histopathological patterns, overlapping cytomorphology, immunophenotypic complexity, inadequate panels, diverse clinical presentations pose a great challenge. Flow cytometric immunophenotyping (FCI) gold standard for diagnosis, subtyping, monitoring many hematological...

10.3389/fonc.2022.779230 article EN cc-by Frontiers in Oncology 2022-03-01

Background Current flow‐cytometric plasma cell (PC) gating is based on CD138, CD38, and CD45 expression. CD138 known for variable expression loss during storage processing. Introduction of anti‐CD38 anti‐CD138 monoclonal‐antibody therapies has limited the use these markers follow‐up. Hence, additional reliable PC‐gating are required. Recently, CD229 been claimed as an alternative marker. However, studies to a small cohort samples. We evaluated utility new marker in routine laboratory...

10.1002/cyto.b.21619 article EN Cytometry Part B Clinical Cytometry 2018-01-10

Introduction: One of the mainstays chemotherapy in acute myeloid leukemia (AML) is induction with a goal to achieve morphological complete remission (CR). However, not all patients by this criterion long-term and subset relapse. This relapse explained presence measurable residual disease (MRD). Methods: We accrued 451 consecutive adult AML (from March 2012 December 2017) after informed consent. All received standard chemotherapy. MRD testing was done at post-induction and, if feasible,...

10.3389/fonc.2019.00450 article EN cc-by Frontiers in Oncology 2019-06-13

MicroRNAs are small, non-coding RNA molecules that becoming popular biomarkers in several diseases. However, their low abundance serum/plasma poses a challenge exploiting potential clinics. Several commercial kits available for rapid isolation of microRNA from plasma. reports guiding the selection appropriate to study downstream assays scarce. Hence, we compared four evaluate microRNA-extraction plasma and provided modified protocol further improved superior kit's performance.We (miRNeasy...

10.11613/bm.2021.030705 article EN cc-by Biochemia Medica 2021-10-13

Measurable residual disease (MRD) is the most relevant predictor of disease-free survival in B-cell acute lymphoblastic leukemia (B-ALL). We aimed to establish a highly sensitive flow cytometry (MFC)-based B-ALL-MRD (BMRD) assay for patients receiving anti-CD19 immunotherapy with an alternate gating approach and document prevalence immunophenotype recurrently occurring low-level mimics confounding populations.We standardized 15-color highly-sensitive BMRD CD19-free approach. The study...

10.1111/ejh.14102 article EN European Journal Of Haematology 2023-09-14
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