Ryosuke Nakamura

ORCID: 0000-0002-4661-840X
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About
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Research Areas
  • Mercury impact and mitigation studies
  • Plant Stress Responses and Tolerance
  • Carbon and Quantum Dots Applications
  • Heavy Metal Exposure and Toxicity
  • Trace Elements in Health
  • Heme Oxygenase-1 and Carbon Monoxide
  • Metalloenzymes and iron-sulfur proteins
  • Heavy metals in environment
  • Autophagy in Disease and Therapy
  • Photosynthetic Processes and Mechanisms
  • Earthquake Detection and Analysis
  • Porphyrin Metabolism and Disorders
  • Geochemistry and Geologic Mapping
  • Synthesis and properties of polymers
  • Aluminum toxicity and tolerance in plants and animals
  • Arsenic contamination and mitigation
  • Electrochemical Analysis and Applications
  • Geomagnetism and Paleomagnetism Studies
  • Fibroblast Growth Factor Research
  • Ionosphere and magnetosphere dynamics
  • Folate and B Vitamins Research
  • Pneumocystis jirovecii pneumonia detection and treatment
  • Drug Transport and Resistance Mechanisms
  • Legume Nitrogen Fixing Symbiosis
  • Proteoglycans and glycosaminoglycans research

Kitasato University
2012-2024

Saitama University
2019-2022

University of Yamanashi
2019

Yamanashi Research Institute
2019

Graduate School USA
2019

East Japan Railway (Japan)
2018

National Institute of Advanced Industrial Science and Technology
2016

Tokyo Medical and Dental University
2015

Keio University
2011-2013

Kanazawa University
2012

Abstract For mercury phytoextraction, we previously demonstrated in Arabidopsis thaliana that a constitutive and ubiquitous promoter-driven expression of bacterial transporter MerC fused with SYP121, plant SNARE for plasma membrane protein trafficking increases accumulation. To advance regulation ectopic the system, present study examined whether merC-SYP121 driven by root epidermis specific promoter (pEpi) is sufficient to enhance accumulation tissues. We generated five independent...

10.1038/s41598-019-40671-x article EN cc-by Scientific Reports 2019-03-13

Phytochelatin (PC) synthesis has been well demonstrated as a major metal tolerance mechanism in Arabidopsis thaliana, whereas its contribution to long-distance element transport especially monocots remains elusive. Using rice cereal model, we examined physiological roles of Oryza sativa phytochelatin synthase 1 (OsPCS1) the distribution and detoxification arsenic (As) cadmium (Cd), two toxic elements associated with food safety concerns. First, isolated four different transcript variants...

10.1093/pcp/pcx114 article EN cc-by Plant and Cell Physiology 2017-08-09

In order to clarify the physiological role of merE gene transposon Tn 21 , a pE4 plasmid that contained merR pMR26 from Pseudomonas strain K‐62, and Shigella flexneri NR1 (R100) was constructed. Bacteria with ( ‐o/p‐ ) were more hypersensitive CH 3 Hg(I) Hg(II), took up significantly than isogenic strain. The MerE protein encoded by localized in membrane cell fraction, but not soluble fraction. Based on these experimental results, we suggest for first time is broad mercury transporter...

10.1016/j.febslet.2009.02.039 article EN FEBS Letters 2009-03-03

The characteristics of bacteria take up mercury into cells via membrane potential-dependent sequence-divergent members the mercuric ion (Mer) superfamily, i.e., a periplasmic scavenging protein (MerP) and one or more inner membrane-spanning proteins (MerC, MerE, MerF, MerT), which transport ions cytoplasm, have been applied in engineering bioreactor used for mercurial bioremediation. We engineered to express MerC, MerT with without MerP clarify their individual role potential mercurial. By...

10.1248/bpb.b13-00554 article EN Biological and Pharmaceutical Bulletin 2013-01-01

Abstract We report the complete nucleotide sequence of plasmid pMR68, isolated from Pseudomonas strain K-62, two plasmids contribute to broad-spectrum mercury resistance and that mer operon one them (pMR26) has been previously characterized. The was 71,020 bp in length contained 75 coding regions. Three gene clusters were identified. first comprised merR-orf4-orf5-merT1-merP1-merF-merA-merB1 , which confers bacterial mercuric ions organomercury. second third merT2-merP2 encodes a transport...

10.1186/2191-0855-3-41 article EN cc-by AMB Express 2013-07-28

IscU serves as a scaffold for the de novo assembly of [2Fe–2S] cluster prior to its delivery recipient protein. It has also been proposed that on one dimer bacterial IscU, two clusters can be converted into single [4Fe–4S] cluster. However, lack structural information about dimeric state hindered our understanding underlying mechanisms. In this study, we determine X-ray crystal structure from thermophilic archaeon Methanothrix thermoacetophila and demonstrate in which are facing each other...

10.1021/acs.biochem.1c00112 article EN Biochemistry 2021-05-03

Phytochelatins (PCs) are major chelators of toxic elements including inorganic arsenic (As) in plant cells. Their synthesis confers tolerance and influences within-plant mobility. Previous studies had shown that various metal/metalloid ions differentially activate PC synthesis. Here we identified C-terminal parts involved arsenite- [As(III)] dependent activation AtPCS1, the primary Arabidopsis synthase. The T-DNA insertion AtPCS1 mutant cad1-6 causes a truncation regulatory domain affects by...

10.1093/pcp/pcx204 article EN Plant and Cell Physiology 2017-12-20

Cysteine desulfurases are pyridoxal-5'-phosphate (PLP)-dependent enzymes that mobilize sulfur derived from the l-cysteine substrate to partner acceptor proteins. Three cysteine desulfurases, IscS, NifS, and SufS, have been identified in ISC, NIF, SUF/SUF-like systems for iron-sulfur (Fe-S) cluster biosynthesis, respectively. These investigated over decades, providing insights into shared/distinct catalytic processes based on two types of (type I: IscS type II: SufS). This review summarizes...

10.2142/biophysico.bppb-v19.0001 article EN cc-by-nc-sa Biophysics and Physicobiology 2022-01-01

Cysteine desulfurase enzymes catalyze sulfur mobilization from l-cysteine to sulfur-containing biomolecules such as iron-sulfur (Fe-S) clusters and thio-tRNAs. The utilize the cofactor pyridoxal-5'-phosphate (PLP), which forms external substrate- product-aldimines ketimines during catalysis are grouped into two types (I II) based on their different catalytic loops. To clarify structure-based mechanisms for each group, we determined structures of intermediates NifS (type I) SufS that involved...

10.1111/febs.15081 article EN FEBS Journal 2019-10-06

In order to clarify the physiological roles played by MerP, MerT and MerE in Gram-negative bacteria, we constructed plasmids pTP4 pTPE21, which contained genes merR, merT merP, from Pseudomonas K-62 plasmid pMR26, or same with merE gene of Tn21 Shigella flexneri NR1 (R100), respectively. Cells containing showed increased hypersensitivity Hg(II), but maintained a normal sensitivity CH3Hg(I). However, cells pTPE21 exhibited Hg(II) accumulated appreciably more than control cells, no significant...

10.1248/jhs.56.123 article EN JOURNAL OF HEALTH SCIENCE 2010-01-01

The bacterial merE gene derived from the Tn21 mer operon encodes a broad-spectrum mercury transporter that governs transport of methylmercury and mercuric ions across cytoplasmic membranes, this is potential molecular tool for improving efficiency phytoremediation. A transgenic Arabidopsis engineered to express MerE was constructed impact expression on accumulation evaluated. subcellular localization transiently expressed GFP-tagged examined in suspension-cultured cells. GFP-MerE found...

10.1186/2191-0855-3-52 article EN cc-by AMB Express 2013-09-03

Abstract —Although many studies have reported that nitroaromatics such as 2,4,6‐trinitrotoluene (TNT) strong mutagenicity, the mechanism of mutagenic activity in these compounds has not yet been reported. We examined mutagenicity versus reactivity and biodegradation by bacteria using TNT its analogs (1,3,5‐trinitrobenzene [TNB], 2,4,6‐trinitroaniline [TNA], 2,4,6‐trinitrophenol [TNP], N ,2,4,6‐tetranitro‐ ‐methyl‐aniline [tetryl], 2,4‐dinitrotoluene [24DNT], 2,6‐dinitrotoluene [26DNT])....

10.1897/06-019r1.1 article EN Environmental Toxicology and Chemistry 2007-01-16

The epithelial–mesenchymal transition (EMT) is a crucial morphological event that occurs during epithelial tumor progression. ZEB1/2 are EMT transcription factors positively correlated with phenotypes and breast cancer aggressiveness. regulate the alternative splicing hence isoform switching of fibroblast growth factor receptors (FGFRs) by repressing regulatory proteins, ESRP1 ESRP2. Here, we show mesenchymal-like oral squamous cell carcinoma (OSCC) cells dependent on autocrine FGF–FGFR...

10.1371/journal.pone.0217451 article EN cc-by PLoS ONE 2019-11-04

MerC, encoded by merC in the transposon Tn21 mer operon, is a heavy metal transporter with potential applications for phytoremediation of metals such as mercuric ion and cadmium. In this study, we demonstrate that MerC also acts methylmercury. When was expressed Escherichia coli XL1-Blue, cells became hypersensitive to CH3Hg(I) uptake these higher than isogenic strain. Moreover, transgenic Arabidopsis plants expressing bacterial or fused plant soluble N-ethylmaleimide-sensitive factor...

10.1248/bpb.b17-00213 article EN Biological and Pharmaceutical Bulletin 2017-01-01

Mercury superfamily proteins, i.e. inner membrane-spanning proteins (MerC, MerE, MerF and MerT) a periplasmic mercury-binding protein (MerP), transport mercury into the cytoplasm. A previous study demonstrated that Mer transporter homolog exhibits cadmium activity; based on this, present aimed to evaluate activity of MerC, MerT effects MerP co-expression in Escherichia coli. Bacteria expressing or without were more sensitive significantly absorbed than did control strain. Expression...

10.1093/femsle/fnaa177 article EN FEMS Microbiology Letters 2020-10-27

Methylmercury (MeHg) is a widely distributed environmental pollutant that causes series of cytotoxic effects. However, molecular mechanisms underlying MeHg toxicity are not fully understood. Here, we report sequestosome1/p62 protects mouse embryonic fibroblasts (MEFs) against low-dose cytotoxicity via clearance MeHg-induced ubiquitinated proteins. p62 mRNA and protein expression in MEFs were temporally induced by exposure p62-deficient exhibited higher sensitivity to compared their wild-type...

10.1038/s41598-017-17112-8 article EN cc-by Scientific Reports 2017-11-27

Abstract Some methylmercury (MeHg) is converted to inorganic mercury (Hg2+) after incorporation into human and animal tissues, where it can remain for a long time. To determine the overall toxicity of MeHg in studies should evaluate low concentrations Hg2+. Although demethylation involved, participating enzymes or underlying mechanisms are unknown; addition, cell membrane permeability Hg2+ makes these analyses challenging. We established model lines assess toxicities using bacterial...

10.1093/toxsci/kfz094 article EN Toxicological Sciences 2019-04-23
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