Taman Upadhaya

ORCID: 0000-0002-8193-546X
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About
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Research Areas
  • Radiomics and Machine Learning in Medical Imaging
  • AI in cancer detection
  • Lung Cancer Diagnosis and Treatment
  • Medical Imaging Techniques and Applications
  • Glioma Diagnosis and Treatment
  • Advanced X-ray and CT Imaging
  • Cancer-related molecular mechanisms research
  • Molecular Biology Techniques and Applications
  • Machine Learning in Healthcare
  • Breast Cancer Treatment Studies
  • Gene expression and cancer classification
  • Cancer, Hypoxia, and Metabolism
  • Myeloproliferative Neoplasms: Diagnosis and Treatment
  • Chronic Myeloid Leukemia Treatments
  • Hepatocellular Carcinoma Treatment and Prognosis
  • Prostate Cancer Treatment and Research
  • Brain Tumor Detection and Classification
  • Colorectal Cancer Screening and Detection
  • Colorectal Cancer Surgical Treatments
  • Gastric Cancer Management and Outcomes
  • Machine Learning in Materials Science
  • Sarcoma Diagnosis and Treatment
  • Artificial Intelligence in Healthcare and Education
  • Radiopharmaceutical Chemistry and Applications
  • Multiple Myeloma Research and Treatments

Cedars-Sinai Medical Center
2023-2024

University Hospital Carl Gustav Carus
2020-2024

Helmholtz-Zentrum Dresden-Rossendorf
2020-2024

TU Dresden
2020-2024

National Center for Tumor Diseases
2020-2024

German Cancer Research Center
2020-2024

Cardiff University
2024

University of Pennsylvania
2024

University of California, San Francisco
2020-2023

Université de Bretagne Occidentale
2015-2020

The image biomarker standardisation initiative (IBSI) is an independent international collaboration which works towards standardising the extraction of biomarkers from acquired imaging for purpose high-throughput quantitative analysis (radiomics). Lack reproducibility and validation studies considered to be a major challenge field. Part this lies in scantiness consensus-based guidelines definitions process translating into biomarkers. IBSI therefore seeks provide nomenclature definitions,...

10.1148/radiol.2020191145 article EN Radiology 2020-03-10

Machine learning (ML) algorithms for selecting and combining radiomic features into multiparametric prediction models have become popular; however, it has been shown that large variations in performance can be obtained by relying on different approaches. The purpose of this study was to evaluate the potential benefit an improved consensus final prediction, as other fields. Methods: evaluation carried out context use radiomics from 18F-FDG PET/CT images predicting outcome stage II-III...

10.3390/diagnostics11040675 article EN cc-by Diagnostics 2021-04-09

Tumor hypoxia increases resistance to radiotherapy and systemic therapy. Our aim was develop validate a disease-agnostic disease-specific CT (+FDG-PET) based radiomics classification signature.A total of 808 patients with imaging data were included: N = 100 training/N 183 external validation cases for signature, 76 39 the H&N signature 62 36 Lung signature. The primary gross tumor volumes (GTV) manually defined by experts on CT. In order dichotomize between hypoxic/well-oxygenated tumors...

10.1016/j.radonc.2020.10.016 article EN cc-by-nc-nd Radiotherapy and Oncology 2020-11-01

Machine learning techniques are becoming increasingly popular in radiomics studies. They can handle high dimensional sets of features with higher robustness than usual statistical analyses, by capturing complex interactions between themselves and feature combinations clinical endpoints under investigation order to build efficient prognostic/predictive models. However, there is no "one fits all" solution deciding which algorithm the most accurate for a given application not always...

10.1109/trpms.2018.2878934 article EN IEEE Transactions on Radiation and Plasma Medical Sciences 2018-11-16

Image-derived features (“radiomics”) are increasingly being considered for patient management in (neuro)oncology and radiotherapy. In Glioblastoma multiforme (GBM), simple often used by clinicians clinical practice, such as the size of tumor or relative sizes necrosis active tumor. First order statistics provide a limited characterization power because they do not incorporate spatial information thus cannot differentiate patterns. this work, we present methodological framework building...

10.1109/isbi.2015.7163814 article EN 2022 IEEE 19th International Symposium on Biomedical Imaging (ISBI) 2015-04-01

Heterogeneity image-derived features of Glioblastoma multiforme (GBM) tumors from multimodal MRI sequences may provide higher prognostic value than standard parameters used in routine clinical practice. We previously developed a framework for automatic extraction and combination (also called "Radiomics") through support vector machines (SVM) predictive model building. The results we obtained cohort 40 GBM suggested these could be to identify patients with poorer outcome. However, is delicate...

10.1117/12.2217151 article EN Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE 2016-03-24

Background: The high dimensionality of radiomic feature sets, the variability in types and potentially computational requirements all underscore need for an effective method to identify smallest set predictive features a given clinical problem. Purpose: Develop methodology tools explain features. Materials Methods: 89,714 were extracted from five cancer datasets: low-grade glioma, meningioma, non-small cell lung (NSCLC), two renal carcinoma cohorts (n=2104). Features categorized by...

10.48550/arxiv.2407.04888 preprint EN arXiv (Cornell University) 2024-07-05

Abstract Deep learning transformer models have exhibited exceptional performance in various clinical tasks, including cancer outcome prediction, when applied to electronic health records (EHR). Inspired by the success of bidirectional encoder representations from transformers (BERT) natural language processing, we present OncoBERT, a deep transfer framework tailored for prediction using unstructured notes diverse sites Glioma, Prostate, and Breast. OncoBERT adapts BERT EHR processing employs...

10.21203/rs.3.rs-3158152/v1 preprint EN cc-by Research Square (Research Square) 2023-07-20

10.1016/j.ijrobp.2020.07.1144 article EN International Journal of Radiation Oncology*Biology*Physics 2020-10-23

In August 2022, the Cancer Informatics for Centers brought together cancer informatics leaders its biannual symposium, Precision Medicine Applications in Radiation Oncology, co-chaired by Quynh-Thu Le, MD (Stanford University), and Walter J. Curran, (GenesisCare). Over course of 3 days, presenters discussed a range topics relevant to radiation oncology community more broadly, including biomarker development, decision support algorithms, novel imaging tools, theranostics, artificial...

10.1200/cci.23.00136 article EN cc-by JCO Clinical Cancer Informatics 2023-09-01

Abstract Objectives To apply CT-based foundational artificial intelligence (AI) and radiomics models for predicting overall survival (OS) patients with locally advanced non-small cell lung cancer (NSCLC). Methods Data 449 retrospectively treated on the NRG Oncology/Radiation Therapy Oncology Group (RTOG) 0617 clinical trial were analyzed. Foundational AI, radiomics, features evaluated using univariate cox regression correlational analyses to determine independent predictors of survival....

10.1093/bjro/tzae038 article EN cc-by BJR|Open 2023-12-12

Recurrence occurs in more than 50% of prostate cancer. To be effective, treatments require precise localization tumor cells. [F]fluoromethylcholine ([18F]FCH) PET/computed tomography (CT) is currently used to restage disease cases biochemical relapse. for therapy response as has been suggested, repeatability limits PET derived indices need established.The aim our study was prospectively assess the qualitative and quantitative reproducibility [18F]FCH PET/CT cancer.Patients with...

10.1097/mnm.0000000000001129 article EN Nuclear Medicine Communications 2019-12-30

Abstract OBJECTIVE. A clinical challenge of ductal carcinoma in situ (DCIS) is to accurately predict individual risk for recurrence. Prior studies have highlighted the importance stromal collagen surrounding breast ducts cancer aggression. We studied structure DCIS a matched case-control cohort women with using second-harmonic generation (SHG) and hematoxylin eosin (H&E) images determine whether could provide additional information. METHODS. 122 patients (61 cases recurrence 61 controls)...

10.1158/1538-7445.sabcs21-p1-02-16 article EN Cancer Research 2022-02-15

Abstract OBJECTIVE It remains a challenge to predict individual risk for recurrence after primary treatment of ductal carcinoma in situ (DCIS). While DCIS is contained within the duct, prior studies have pointed importance stromal collagen cancer progression. Using hematoxylin and eosin (H&E) stain-based images, we studied structure surrounding case-control cohort women determine whether could provide additional information. METHODS We present quantitative histology image analysis...

10.1158/1538-7445.sabcs20-ps4-43 article EN Cancer Research 2021-02-15
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