Jill S. Barnholtz‐Sloan

ORCID: 0000-0001-6190-9304
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About
Contact & Profiles
Research Areas
  • Glioma Diagnosis and Treatment
  • Brain Metastases and Treatment
  • Cancer Genomics and Diagnostics
  • Radiomics and Machine Learning in Medical Imaging
  • Epigenetics and DNA Methylation
  • MicroRNA in disease regulation
  • Meningioma and schwannoma management
  • Esophageal Cancer Research and Treatment
  • Chromatin Remodeling and Cancer
  • RNA modifications and cancer
  • Ferroptosis and cancer prognosis
  • Bioinformatics and Genomic Networks
  • Cancer-related molecular mechanisms research
  • Mechanisms of cancer metastasis
  • Cancer-related gene regulation
  • Genetic Associations and Epidemiology
  • Cancer, Lipids, and Metabolism
  • Ovarian cancer diagnosis and treatment
  • Lung Cancer Treatments and Mutations
  • Neuroblastoma Research and Treatments
  • Cancer Risks and Factors
  • BRCA gene mutations in cancer
  • Genetic factors in colorectal cancer
  • Cancer, Hypoxia, and Metabolism
  • Gene expression and cancer classification

Division of Cancer Epidemiology and Genetics
2021-2025

National Cancer Institute
2021-2025

Central Brain Tumor Registry of the United States
2016-2025

Case Western Reserve University
2015-2024

University Health System
2020-2024

University School
2014-2024

Center for Information Technology
2021-2024

University Hospitals of Cleveland
2014-2024

National Institutes of Health
2011-2024

Cancer Genetics (United States)
2011-2024

The Central Brain Tumor Registry of the United States (CBTRUS), in collaboration with Centers for Disease Control (CDC) and National Cancer Institute (NCI), is largest population-based registry focused exclusively on primary brain other central nervous system (CNS) tumors (US) represents entire US population. This report contains most up-to-date data (malignant non-malignant) supersedes all previous CBTRUS reports terms completeness accuracy. All rates (incidence mortality) are age-adjusted...

10.1093/neuonc/not151 article EN Neuro-Oncology 2013-10-17
Cameron Brennan Roel G.W. Verhaak Aaron McKenna Benito Campos Houtan Noushmehr and 95 more Sofie R. Salama Siyuan Zheng Debyani Chakravarty Zack Sanborn Samuel H. Berman Rameen Beroukhim Brady Bernard Chang‐Jiun Wu Giannicola Genovese Ilya Shmulevich Jill S. Barnholtz‐Sloan Lihua Zou Rahulsimham Vegesna Sachet A. Shukla Giovanni Ciriello W. K. Alfred Yung Wei Zhang Carrie Sougnez Tom Mikkelsen Kenneth Aldape Darell D. Bigner Erwin G. Van Meir Michael D. Prados Andrew E. Sloan Keith L. Black Jennifer Eschbacher Gaetano Finocchiaro William A. Friedman David W. Andrews Abhijit Guha Mary Iacocca Brian Patrick O’Neill Greg Foltz Jerome Myers Daniel J. Weisenberger Robert Penny Raju Kucherlapati Charles M. Perou D. Neil Hayes Richard A. Gibbs Marco A. Marra Gordon B. Mills Eric S. Lander Paul T. Spellman Richard K. Wilson Chris Sander John N. Weinstein Matthew Meyerson Stacey Gabriel Peter W. Laird David Haussler Gad Getz Lynda Chin Christopher C. Benz Jill S. Barnholtz‐Sloan Wendi Barrett Quinn T. Ostrom Yingli Wolinsky Keith L. Black Bikash Bose Paul T. Boulos Madgy Boulos Jenn Brown Christine Czerinski Matthew Eppley Mary Iacocca Thelma Kempista Teresa Kitko Yakov Koyfman Brenda Rabeno Pawan Rastogi Michael C. Sugarman Patricia Swanson Kennedy Yalamanchii Ilana P. Otey Yingchun Spring Liu Yonghong Xiao J. Todd Auman Peng‐Chieh Chen Angela Hadjipanayis Eunjung Lee Semin Lee Peter J. Park Jonathan G. Seidman Lixing Yang Raju Kucherlapati Steven N. Kalkanis Tom Mikkelsen Laila Poisson Aditya Raghunathan Lisa Scarpace Brady Bernard Ryan Bressler Andrea Eakin Lisa Iype

10.1016/j.cell.2013.09.034 article EN publisher-specific-oa Cell 2013-10-01
Daniel J. Brat Roel G.W. Verhaak Kenneth D. Aldape W. K. Alfred Yung Sofie R. Salama and 95 more Lee Cooper Esther Rheinbay C. Ryan Miller Mark Vitucci Olena Morozova A. Gordon Robertson Houtan Noushmehr Peter W. Laird Andrew D. Cherniack Rehan Akbani Jason T. Huse Giovanni Ciriello Laila Poisson Jill S. Barnholtz‐Sloan Mitchel S. Berger Cameron Brennan Rivka R. Colen Howard Colman Adam E. Flanders Caterina Giannini Mia Grifford Antonio Iavarone Rajan Jain Isaac Joseph Jaegil Kim L. Sylvia Tom Mikkelsen Bradley A. Murray Brian Patrick O’Neill Lior Pachter D. Williams Parsons Carrie Sougnez Erik P. Sulman Scott R. VandenBerg Erwin G. Van Meir Andreas von Deimling Hailei Zhang Daniel Crain Kevin Lau David Mallery Scott Morris Joseph Paulauskis Robert Penny Troy Shelton Mark E. Sherman Peggy Yena Aaron Black Jay Bowen Katie Dicostanzo Julie M. Gastier‐Foster Kristen Leraas Tara M. Lichtenberg Christopher R. Pierson Nilsa C. Ramirez Cynthia Taylor Stephanie Weaver Lisa Wise Erik Zmuda Tanja M. Davidsen John A. Demchok Greg Eley Martin L. Ferguson Carolyn M. Hutter Kenna Shaw Bradley A. Ozenberger Margi Sheth Heidi J. Sofia Roy Tarnuzzer Linghua Wang Liming Yang Jean C. Zenklusen Brenda Ayala Julien Baboud Sudha Chudamani Mark A. Jensen Jia Liu Todd Pihl Rohini Raman Yunhu Wan Ye Wu Adrian Ally J. Todd Auman Miruna Balasundaram Saianand Balu Stephen B. Baylin Rameen Beroukhim Arnoud Boot Reanne Bowlby Christopher A. Bristow Denise Brooks Yaron S.N. Butterfield Rebecca Carlsen Scott L. Carter Lynda Chin Andy Chu

Diffuse low-grade and intermediate-grade gliomas (which together make up the lower-grade gliomas, World Health Organization grades II III) have highly variable clinical behavior that is not adequately predicted on basis of histologic class. Some are indolent; others quickly progress to glioblastoma. The uncertainty compounded by interobserver variability in diagnosis. Mutations IDH, TP53, ATRX codeletion chromosome arms 1p 19q (1p/19q codeletion) been implicated as clinically relevant...

10.1056/nejmoa1402121 article EN New England Journal of Medicine 2015-06-11
Lauri A. Aaltonen Federico Abascal Adam Abeshouse Hiroyuki Aburatani David J. Adams and 95 more Nishant Agrawal Keun Soo Ahn Sung-Min Ahn Hiroshi Aikata Rehan Akbani Kadir C. Akdemir Hikmat Al‐Ahmadie Sultan T. Al‐Sedairy Fátima Al‐Shahrour Malik Alawi Monique Albert Kenneth Aldape Ludmil B. Alexandrov Adrian Ally Kathryn Alsop Eva G. Álvarez Fernanda Amary Samirkumar B. Amin Brice Aminou Ole Ammerpohl Matthew J. Anderson Yeng Ang Davide Antonello Pavana Anur Samuel Aparício Elizabeth L. Appelbaum Yasuhito Arai Axel Aretz Koji Arihiro Shun‐ichi Ariizumi Joshua Armenia Laurent Arnould L. Sylvia Yassen Assenov Gurnit Atwal Sietse Aukema J. Todd Auman Miriam R. R. Aure Philip Awadalla Marta Aymerich Gary D. Bader Adrian Baez‐Ortega Matthew H. Bailey Peter J. Bailey Miruna Balasundaram Saianand Balu Pratiti Bandopadhayay Rosamonde E. Banks Stefano Barbi Andrew P. Barbour Jonathan Barenboim Jill S. Barnholtz‐Sloan Hugh Barr Elisabet Barrera John G. Bartlett Javier Bartolomé Claudio Bassi Oliver F. Bathe Daniel Baumhoer Prashant Bavi Stephen B. Baylin Wojciech Bażant Duncan Beardsmore Timothy A. Beck Sam Behjati Andreas Behren Beifang Niu Cindy Bell Sergi Beltrán Christopher C. Benz Andrew Berchuck Anke K. Bergmann Erik N. Bergstrom Benjamin P. Berman Daniel M. Berney Stephan Wolf Rameen Beroukhim Mario Berríos Samantha Bersani Johanna Bertl Miguel Betancourt Vinayak Bhandari Shriram G. Bhosle Andrew V. Biankin Matthias Bieg Darell D. Bigner Hans Binder Ewan Birney Michael J. Birrer Nidhan K. Biswas Bodil Bjerkehagen Tom Bodenheimer Lori Boice Giada Bonizzato Johann S. de Bono

Abstract Cancer is driven by genetic change, and the advent of massively parallel sequencing has enabled systematic documentation this variation at whole-genome scale 1–3 . Here we report integrative analysis 2,658 whole-cancer genomes their matching normal tissues across 38 tumour types from Pan-Cancer Analysis Whole Genomes (PCAWG) Consortium International Genome (ICGC) The Atlas (TCGA). We describe generation PCAWG resource, facilitated international data sharing using compute clouds. On...

10.1038/s41586-020-1969-6 article EN cc-by Nature 2020-02-05

The Central Brain Tumor Registry of the United States (CBTRUS), in collaboration with Centers for Disease Control and Prevention National Cancer Institute, is largest population-based registry focused exclusively on primary brain other central nervous system (CNS) tumors (US) represents entire US population. This report contains most up-to-date data available supersedes all previous reports terms completeness accuracy. All rates are age-adjusted using 2000 standard population presented per...

10.1093/neuonc/noz150 article EN Neuro-Oncology 2019-08-23

CBTRUS does not collect data directly from patients' medical records.As noted, for analyses come the NPCR and SEER programs.By law, all primary malignant non-malignant brain tumors are reportable diseases.Hence, tumor registrars in treatment centers these send this information to CCR their states where they collated de-identified sent SEER.Brain CNS reported using site definition described Public Law 107-260. 3On an annual basis, secures permission release on CBTRUS.CCR plays essential role...

10.1093/neuonc/nov189 article EN Neuro-Oncology 2015-10-01
Michele Ceccarelli Floris P Barthel Tathiane M. Malta Thaís S. Sabedot Sofie R. Salama and 95 more Bradley A. Murray Olena Morozova Yulia Newton Amie Radenbaugh Stefano Maria Pagnotta Samreen Anjum Jiguang Wang Ganiraju C. Manyam Pietro Zoppoli Shiyun Ling Arjun A. Rao Mia Grifford Andrew D. Cherniack Hailei Zhang Laila Poisson Carlos Gilberto Carlotti Daniela Pretti da Cunha Tirapelli Arvind Rao Tom Mikkelsen Ching C. Lau W. K. Alfred Yung Raúl Rabadán Jason T. Huse Daniel J. Brat Norman L. Lehman Jill S. Barnholtz‐Sloan Siyuan Zheng Kenneth R. Hess Ganesh Rao Matthew Meyerson Rameen Beroukhim Lee Cooper Rehan Akbani Margaret Wrensch David Haussler Kenneth D. Aldape Peter W. Laird David H. Gutmann Houtan Noushmehr Antonio Iavarone Roel G.W. Verhaak Samreen Anjum Harindra Arachchi J. Todd Auman Miruna Balasundaram Saianand Balu Gene H. Barnett Stephen Baylin Sue Bell Christopher C. Benz Natalie Bir Keith L. Black Tom Bodenheimer Lori Boice Arnoud Boot Jay Bowen Christopher A. Bristow Yaron S.N. Butterfield Qingrong Chen Lynda Chin Juok Cho Eric Chuah Sudha Chudamani Simon G. Coetzee Mark L. Cohen Howard Colman Marta Couce Fulvio D’Angelo Tanja M. Davidsen Amy Davis John A. Demchok Karen Devine Li Ding Rebecca Duell J. Bradley Elder Jennifer Eschbacher Ashley Fehrenbach Martin L. Ferguson Scott Frazer Gregory N. Fuller Jordonna Fulop Stacey Gabriel Luciano Garofano Julie M. Gastier-Foster Nils Gehlenborg Mark Gerken Gad Getz Caterina Giannini William J. Gibson Angela Hadjipanayis D. Neil Hayes David I. Heiman Beth Hermes Joe Hilty Katherine A. Hoadley

10.1016/j.cell.2015.12.028 article EN publisher-specific-oa Cell 2016-01-01

Population-based estimates of the incidence brain metastases are not generally available. The purpose this study was to calculate population-based proportions (IPs) from single primary lung, melanoma, breast, renal, or colorectal cancer.Patients diagnosed with cancer (1973 2001) in Metropolitan Detroit Cancer Surveillance System (MDCSS) were used for analysis. IP by site and variable interest (race, sex, age at diagnosis cancer, Surveillance, Epidemiology, End Results [SEER] stage cancer)...

10.1200/jco.2004.12.149 article EN Journal of Clinical Oncology 2004-07-14
Nicole M. Kuderer Toni K. Choueiri Dimpy P. Shah Yu Shyr Samuel M. Rubinstein and 95 more Donna R. Rivera Sanjay Shete Chih–Yuan Hsu Aakash Desai Gilberto Lopes Petros Grivas Corrie Painter Solange Peters Michael A. Thompson Ziad Bakouny Gerald Batist Tanios Bekaii‐Saab Mehmet Asım Bilen Nathaniel Bouganim Mateo Bover Larroya Daniel Castellano Salvatore A. Del Prete Deborah Blythe Doroshow Pamela Egan Arielle Elkrief Dimitrios Farmakiotis Daniel Flora Matthew D. Galsky Michael Glover Elizabeth A. Griffiths Anthony P. Gulati Shilpa Gupta Navid Hafez Þorvarður R. Hálfdánarson Jessica E. Hawley Emily Hsu Anup Kasi Ali Raza Khaki Christopher A. Lemmon Colleen Lewis Barbara Logan Tyler Masters Rana R. McKay Ruben A. Mesa Alicia K. Morgans Mary F. Mulcahy Orestis A. Panagiotou Prakash Peddi Nathan A. Pennell Kerry L. Reynolds L Rosen Rachel Rosovsky Mary Salazar Andrew Schmidt Sumit Shah Justin Shaya John A. Steinharter Keith Stockerl‐Goldstein Suki Subbiah Donald C. Vinh Firas Wehbe Lisa B. Weissmann Julie Wu Elizabeth Wulff‐Burchfield Zhuoer Xie Albert C. Yeh Peter Paul Yu Alice Y. Zhou Leyre Zubiri Sanjay Mishra Gary H. Lyman Brian I. Rini Jeremy L. Warner Maheen Z. Abidi Jared D. Acoba Neeraj Agarwal Syed A. Ahmad Archana Ajmera Jessica K. Altman Anne H. Angevine Nilo Azad Michael Bär Aditya Bardia Jill S. Barnholtz‐Sloan Briana Barrow Babar Bashir Rimma Belenkaya Stephanie Berg Eric Bernicker Christine M. Bestvina Rohit Bishnoi Genevieve M. Boland Mark Bonnen Gabrielle Bouchard Daniel W. Bowles Fiona Busser Angelo Cabal Paolo F. Caimi Theresa M. Carducci Carla Casulo

10.1016/s0140-6736(20)31187-9 article EN other-oa The Lancet 2020-05-28

The Central Brain Tumor Registry of the United States (CBTRUS), in collaboration with Centers for Disease Control (CDC) and National Cancer Institute (NCI), is largest population-based registry focused exclusively on primary brain other central nervous system (CNS) tumors (US) represents entire US population. This report contains most up-to-date data (malignant non-malignant) supersedes all previous CBTRUS reports terms completeness accuracy. All rates (incidence mortality) are age-adjusted...

10.1093/neuonc/noaa200 article EN Neuro-Oncology 2020-08-17

The Central Brain Tumor Registry of the United States (CBTRUS), in collaboration with CDC and NCI, is largest population-based registry focused exclusively on primary brain other central nervous system (CNS) tumors (US) represents entire US population. This report contains most up-to-date data available supersedes all previous reports terms completeness accuracy first CBTRUS Report to provide distribution molecular markers for selected CNS tumor histologies. All rates are age-adjusted using...

10.1093/neuonc/noab200 article EN Neuro-Oncology 2021-10-01

Abstract The Central Brain Tumor Registry of the United States (CBTRUS), in collaboration with Centers for Disease Control and Prevention National Cancer Institute, is largest population-based registry focused exclusively on primary brain other central nervous system (CNS) tumors (US) represents entire US population. This report contains most up-to-date data available supersedes all previous reports terms completeness accuracy. All rates are age-adjusted using 2000 standard population...

10.1093/neuonc/noac202 article EN Neuro-Oncology 2022-10-05

Significance Predicting the expected outcome of patients diagnosed with cancer is a critical step in treatment. Advances genomic and imaging technologies provide physicians vast amounts data, yet prognostication remains largely subjective, leading to suboptimal clinical management. We developed computational approach based on deep learning predict overall survival brain tumors from microscopic images tissue biopsies biomarkers. This method uses adaptive feedback simultaneously learn visual...

10.1073/pnas.1717139115 article EN cc-by-nc-nd Proceedings of the National Academy of Sciences 2018-03-12

Abstract Brain and other central nervous system (CNS) tumors are among the most fatal cancers account for substantial morbidity mortality in United States. Population‐based data from Central Tumor Registry of States (a combined set National Program Cancer Registries [NPCR] Surveillance, Epidemiology, End Results [SEER] registries), NPCR, Vital Statistics System SEER program were analyzed to assess contemporary burden malignant nonmalignant brain CNS (hereafter brain) by histology, anatomic...

10.3322/caac.21693 article EN CA A Cancer Journal for Clinicians 2021-08-24

Abstract The Central Brain Tumor Registry of the United States (CBTRUS), in collaboration with Centers for Disease Control and Prevention National Cancer Institute, is largest population-based registry focused exclusively on primary brain other central nervous system (CNS) tumors (US) represents entire US population. This report contains most up-to-date data available supersedes all previous CBTRUS reports terms completeness accuracy. All rates are age-adjusted using 2000 standard population...

10.1093/neuonc/noad149 article EN Neuro-Oncology 2023-10-04

Glioblastoma is an aggressive brain tumor that carries a poor prognosis. The tumor's molecular and cellular landscapes are complex, their relationships to histologic features routinely used for diagnosis unclear. We present the Ivy Atlas, anatomically based transcriptional atlas of human glioblastoma aligns individual with genomic alterations gene expression patterns, thus assigning information most important morphologic hallmarks tumor. its clinical database freely accessible online data...

10.1126/science.aaf2666 article EN Science 2018-05-10
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