Kenneth Aldape

ORCID: 0000-0001-5119-7550
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Research Areas
  • Glioma Diagnosis and Treatment
  • Cancer Genomics and Diagnostics
  • Meningioma and schwannoma management
  • Epigenetics and DNA Methylation
  • Brain Metastases and Treatment
  • Radiomics and Machine Learning in Medical Imaging
  • Cancer, Hypoxia, and Metabolism
  • Neuroblastoma Research and Treatments
  • MicroRNA in disease regulation
  • Neurofibromatosis and Schwannoma Cases
  • Chromatin Remodeling and Cancer
  • Ferroptosis and cancer prognosis
  • Cancer Immunotherapy and Biomarkers
  • RNA modifications and cancer
  • Cancer-related molecular mechanisms research
  • Pituitary Gland Disorders and Treatments
  • Lung Cancer Treatments and Mutations
  • Childhood Cancer Survivors' Quality of Life
  • Melanoma and MAPK Pathways
  • Head and Neck Surgical Oncology
  • Cancer Research and Treatments
  • Sarcoma Diagnosis and Treatment
  • Bioinformatics and Genomic Networks
  • Single-cell and spatial transcriptomics
  • Histone Deacetylase Inhibitors Research

National Cancer Institute
2013-2025

Center for Cancer Research
2011-2025

National Institutes of Health
2018-2025

Cancer Institute (WIA)
2024

National Cancer Institute
2021-2024

Hospital for Sick Children
2016-2024

Brigham and Women's Hospital
2024

National Institute of Health
2024

California University of Pennsylvania
2024

Rush University Medical Center
2024

Cameron Brennan Roel G.W. Verhaak Aaron McKenna Benito Campos Houtan Noushmehr and 95 more Sofie R. Salama Siyuan Zheng Debyani Chakravarty Zack Sanborn Samuel H. Berman Rameen Beroukhim Brady Bernard Chang‐Jiun Wu Giannicola Genovese Ilya Shmulevich Jill S. Barnholtz‐Sloan Lihua Zou Rahulsimham Vegesna Sachet A. Shukla Giovanni Ciriello W. K. Alfred Yung Wei Zhang Carrie Sougnez Tom Mikkelsen Kenneth Aldape Darell D. Bigner Erwin G. Van Meir Michael D. Prados Andrew E. Sloan Keith L. Black Jennifer Eschbacher Gaetano Finocchiaro William A. Friedman David W. Andrews Abhijit Guha Mary Iacocca Brian Patrick O’Neill Greg Foltz Jerome Myers Daniel J. Weisenberger Robert Penny Raju Kucherlapati Charles M. Perou D. Neil Hayes Richard A. Gibbs Marco A. Marra Gordon B. Mills Eric S. Lander Paul T. Spellman Richard K. Wilson Chris Sander John N. Weinstein Matthew Meyerson Stacey Gabriel Peter W. Laird David Haussler Gad Getz Lynda Chin Christopher C. Benz Jill S. Barnholtz‐Sloan Wendi Barrett Quinn T. Ostrom Yingli Wolinsky Keith L. Black Bikash Bose Paul T. Boulos Madgy Boulos Jenn Brown Christine Czerinski Matthew Eppley Mary Iacocca Thelma Kempista Teresa Kitko Yakov Koyfman Brenda Rabeno Pawan Rastogi Michael C. Sugarman Patricia Swanson Kennedy Yalamanchii Ilana P. Otey Yingchun Spring Liu Yonghong Xiao J. Todd Auman Peng‐Chieh Chen Angela Hadjipanayis Eunjung Lee Semin Lee Peter J. Park Jonathan G. Seidman Lixing Yang Raju Kucherlapati Steven N. Kalkanis Tom Mikkelsen Laila Poisson Aditya Raghunathan Lisa Scarpace Brady Bernard Ryan Bressler Andrea Eakin Lisa Iype

10.1016/j.cell.2013.09.034 article EN publisher-specific-oa Cell 2013-10-01
Ludmil B. Alexandrov Jaegil Kim Nicholas J. Haradhvala Mi Ni Huang Alvin Wei Tian Ng and 95 more Yang Wu Arnoud Boot Kyle Covington Dmitry A. Gordenin Erik N. Bergstrom S. M. Ashiqul Islam Núria López-Bigas Leszek J. Klimczak John R. McPherson Sandro Morganella Radhakrishnan Sabarinathan David A. Wheeler Ville Mustonen Ludmil B. Alexandrov Erik N. Bergstrom Arnoud Boot Paul C. Boutros Kin Chan Kyle Covington Akihiro Fujimoto Gad Getz Dmitry A. Gordenin Nicholas J. Haradhvala Mi Ni Huang S. M. Ashiqul Islam Marat D. Kazanov Jaegil Kim Leszek J. Klimczak Núria López-Bigas Michael S. Lawrence Iñigo Martincorena John R. McPherson Sandro Morganella Ville Mustonen Hidewaki Nakagawa Alvin Wei Tian Ng Paz Polak Stephenie D. Prokopec Steven A. Roberts Steve Rozen Radhakrishnan Sabarinathan Natalie Saini Tatsuhiro Shibata Yuichi Shiraishi Michael R. Stratton Bin Tean Teh Ignacio Vázquez-Garćıa David A. Wheeler Yang Wu Fouad Yousif Willie Yu Gad Getz Steve Rozen Michael R. Stratton Lauri A. Aaltonen Federico Abascal Adam Abeshouse Hiroyuki Aburatani David J. Adams Nishant Agrawal Keun Soo Ahn Sung‐Min Ahn Hiroshi Aikata Rehan Akbani Kadir C. Akdemir Hikmat Al‐Ahmadie Sultan T. Al‐Sedairy Fátima Al‐Shahrour Malik Alawi Monique Albert Kenneth Aldape Ludmil B. Alexandrov Adrian Ally Kathryn Alsop Eva G. Álvarez Fernanda Amary Samirkumar B. Amin Brice Aminou Ole Ammerpohl Matthew J. Anderson Yeng Ang Davide Antonello Pavana Anur Samuel Aparício Elizabeth L. Appelbaum Yasuhito Arai Axel Aretz Koji Arihiro Shun‐ichi Ariizumi Joshua Armenia Laurent Arnould L. Sylvia Yassen Assenov Gurnit Atwal Sietse Aukema

Abstract Somatic mutations in cancer genomes are caused by multiple mutational processes, each of which generates a characteristic signature 1 . Here, as part the Pan-Cancer Analysis Whole Genomes (PCAWG) Consortium 2 International Cancer Genome (ICGC) and The Atlas (TCGA), we characterized signatures using 84,729,690 somatic from 4,645 whole-genome 19,184 exome sequences that encompass most types cancer. We identified 49 single-base-substitution, 11 doublet-base-substitution, 4...

10.1038/s41586-020-1943-3 article EN cc-by Nature 2020-02-05

Concurrent treatment with temozolomide and radiotherapy followed by maintenance is the standard of care for patients newly diagnosed glioblastoma. Bevacizumab, a humanized monoclonal antibody against vascular endothelial growth factor A, currently approved recurrent Whether addition bevacizumab would improve survival among glioblastoma not known.

10.1056/nejmoa1308573 article EN New England Journal of Medicine 2014-02-19
Lauri A. Aaltonen Federico Abascal Adam Abeshouse Hiroyuki Aburatani David J. Adams and 95 more Nishant Agrawal Keun Soo Ahn Sung-Min Ahn Hiroshi Aikata Rehan Akbani Kadir C. Akdemir Hikmat Al‐Ahmadie Sultan T. Al‐Sedairy Fátima Al‐Shahrour Malik Alawi Monique Albert Kenneth Aldape Ludmil B. Alexandrov Adrian Ally Kathryn Alsop Eva G. Álvarez Fernanda Amary Samirkumar B. Amin Brice Aminou Ole Ammerpohl Matthew J. Anderson Yeng Ang Davide Antonello Pavana Anur Samuel Aparício Elizabeth L. Appelbaum Yasuhito Arai Axel Aretz Koji Arihiro Shun‐ichi Ariizumi Joshua Armenia Laurent Arnould L. Sylvia Yassen Assenov Gurnit Atwal Sietse Aukema J. Todd Auman Miriam R. R. Aure Philip Awadalla Marta Aymerich Gary D. Bader Adrian Baez‐Ortega Matthew H. Bailey Peter J. Bailey Miruna Balasundaram Saianand Balu Pratiti Bandopadhayay Rosamonde E. Banks Stefano Barbi Andrew P. Barbour Jonathan Barenboim Jill S. Barnholtz‐Sloan Hugh Barr Elisabet Barrera John G. Bartlett Javier Bartolomé Claudio Bassi Oliver F. Bathe Daniel Baumhoer Prashant Bavi Stephen B. Baylin Wojciech Bażant Duncan Beardsmore Timothy A. Beck Sam Behjati Andreas Behren Beifang Niu Cindy Bell Sergi Beltrán Christopher C. Benz Andrew Berchuck Anke K. Bergmann Erik N. Bergstrom Benjamin P. Berman Daniel M. Berney Stephan Wolf Rameen Beroukhim Mario Berríos Samantha Bersani Johanna Bertl Miguel Betancourt Vinayak Bhandari Shriram G. Bhosle Andrew V. Biankin Matthias Bieg Darell D. Bigner Hans Binder Ewan Birney Michael J. Birrer Nidhan K. Biswas Bodil Bjerkehagen Tom Bodenheimer Lori Boice Giada Bonizzato Johann S. de Bono

Abstract Cancer is driven by genetic change, and the advent of massively parallel sequencing has enabled systematic documentation this variation at whole-genome scale 1–3 . Here we report integrative analysis 2,658 whole-cancer genomes their matching normal tissues across 38 tumour types from Pan-Cancer Analysis Whole Genomes (PCAWG) Consortium International Genome (ICGC) The Atlas (TCGA). We describe generation PCAWG resource, facilitated international data sharing using compute clouds. On...

10.1038/s41586-020-1969-6 article EN cc-by Nature 2020-02-05

10.1016/j.ccr.2012.08.024 article EN publisher-specific-oa Cancer Cell 2012-10-01

Purpose Radiotherapy with concomitant and adjuvant temozolomide is the standard of care for newly diagnosed glioblastoma (GBM). O 6 -methylguanine-DNA methyltransferase (MGMT) methylation status may be an important determinant treatment response. Dose-dense (DD) results in prolonged depletion MGMT blood mononuclear cells possibly tumor. This trial tested whether DD improves overall survival (OS) or progression-free (PFS) patients GBM. Patients Methods phase III enrolled older than age 18...

10.1200/jco.2013.49.6968 article EN Journal of Clinical Oncology 2013-10-08
Dominik Sturm Brent A. Orr Umut H. Toprak Volker Hovestadt David Jones and 95 more David Capper Martin Sill Ivo Buchhalter Paul A. Northcott Irina Leis Marina Ryzhova Christian Koelsche Elke Pfaff Sariah J. Allen Gnanaprakash Balasubramanian Barbara C. Worst Kristian W. Pajtler Sebastian Brabetz Pascal D. Johann Felix Sahm Jüri Reimand Alan Mackay Diana Carvalho Marc Remke Joanna J. Phillips Arie Perry Cynthia Cowdrey Rachid Drissi Maryam Fouladi Felice Giangaspero Maria Łastowska Wiesława Grajkowska Wolfram Scheurlen Torsten Pietsch Christian Hagel Johannes Gojo Daniela Lötsch Walter Berger Irene Slavc Christine Haberler Anne Jouvet Stefan Holm Silvia Höfer Marco Prinz Catherine Keohane Iris Fried Christian Mawrin David Scheie Bret C. Mobley Matthew Schniederjan Mariarita Santi Anna Maria Buccoliero Sonika Dahiya Christof M. Kramm André O. von Bueren Katja von Hoff Stefan Rutkowski Christel Herold‐Mende Michael C. Frühwald Till Milde Martin Hasselblatt Pieter Wesseling Jochen Rößler Ulrich Schüller Martin Ebinger Jens Schittenhelm Stephan Frank Rainer Grobholz István Vajtai Volkmar Hans Reinhard Schneppenheim Karel Zitterbart V. Peter Collins Eleonora Aronica Pascale Varlet Stéphanie Puget Christelle Dufour Jacques Grill Dominique Figarella‐Branger Marietta Wolter Martin U. Schuhmann Tarek Shalaby Michael Grotzer Timothy Van Meter Camelia-Maria Monoranu Jörg Felsberg Guido Reifenberger Matija Snuderl Lynn Ann Forrester Jan Köster Rogier Versteeg Richard Volckmann Peter van Sluis Stephan Wolf Tom Mikkelsen Amar Gajjar Kenneth Aldape Andrew S. Moore Michael D. Taylor Chris Jones

10.1016/j.cell.2016.01.015 article EN publisher-specific-oa Cell 2016-02-01

Immunologic targeting of tumor-specific gene mutations may allow precise eradication neoplastic cells without toxicity. Epidermal growth factor receptor variant III (EGFRvIII) is a constitutively activated and immunogenic mutation not expressed in normal tissues but widely glioblastoma multiforme (GBM) other neoplasms.A phase II, multicenter trial was undertaken to assess the immunogenicity an EGFRvIII-targeted peptide vaccine estimate progression-free survival (PFS) overall (OS) vaccinated...

10.1200/jco.2010.28.6963 article EN Journal of Clinical Oncology 2010-10-05
Isidro Cortés‐Ciriano Jake June-Koo Lee Ruibin Xi Dhawal Jain Youngsook L. Jung and 95 more Lixing Yang Dmitry A. Gordenin Leszek J. Klimczak Cheng‐Zhong Zhang David Pellman Kadir C. Akdemir Eva G. Álvarez Adrian Baez‐Ortega Rameen Beroukhim Paul C. Boutros David D.L. Bowtell Benedikt Brors Kathleen H. Burns Peter J. Campbell Kin Chan Ken Chen Isidro Cortés‐Ciriano Ana Dueso-Barroso Andrew Dunford Paul A. Edwards Xavier Estivill Dariush Etemadmoghadam Lars Feuerbach J. Lynn Fink Milana Frenkel‐Morgenstern Dale W. Garsed Mark Gerstein Dmitry A. Gordenin David Haan James E. Haber Julian M. Hess Barbara Hutter Marcin Imieliński David Jones Young Seok Ju Marat D. Kazanov Leszek J. Klimczak Youngil Koh Jan O. Korbel Kiran Kumar Eunjung Alice Lee Jake June-Koo Lee Yilong Li Andy G. Lynch Geoff Macintyre Florian Markowetz Iñigo Martincorena Alexander Martinez‐Fundichely Satoru Miyano Hidewaki Nakagawa Fábio C. P. Navarro Stephan Ossowski Peter J. Park John V. Pearson Montserrat Puiggròs Karsten Rippe Nicola D. Roberts Steven A. Roberts Bernardo Rodríguez–Martín Steven E. Schumacher Ralph Scully Mark Shackleton Nicholas D. Sidiropoulos Lina Sieverling Chip Stewart David Torrents José M. C. Tubío Izar Villasante Nicola Waddell Jeremiah A. Wala Joachim Weischenfeldt Lixing Yang Xiaotong Yao Sung-Soo Yoon Jorge Zamora Cheng‐Zhong Zhang Peter J. Park Lauri A. Aaltonen Federico Abascal Adam Abeshouse Hiroyuki Aburatani David J. Adams Nishant Agrawal Keun Soo Ahn Sung‐Min Ahn Hiroshi Aikata Rehan Akbani Kadir C. Akdemir Hikmat Al‐Ahmadie Sultan T. Al‐Sedairy Fátima Al‐Shahrour Malik Alawi Monique Albert Kenneth Aldape Ludmil B. Alexandrov

Chromothripsis is a mutational phenomenon characterized by massive, clustered genomic rearrangements that occurs in cancer and other diseases. Recent studies selected types have suggested chromothripsis may be more common than initially inferred from low-resolution copy-number data. Here, as part of the Pan-Cancer Analysis Whole Genomes (PCAWG) Consortium International Cancer Genome (ICGC) The Atlas (TCGA), we analyze patterns across 2,658 tumors 38 using whole-genome sequencing We find...

10.1038/s41588-019-0576-7 article EN cc-by Nature Genetics 2020-02-05

10.1038/nature13108 article EN Nature 2014-02-01

Purpose DNX-2401 (Delta-24-RGD; tasadenoturev) is a tumor-selective, replication-competent oncolytic adenovirus. Preclinical studies demonstrated antiglioma efficacy, but the effects and mechanisms of action have not been evaluated in patients. Methods A phase I, dose-escalation, biologic-end-point clinical trial was conducted 37 patients with recurrent malignant glioma. Patients received single intratumoral injection into biopsy-confirmed tumor to evaluate safety response across eight dose...

10.1200/jco.2017.75.8219 article EN Journal of Clinical Oncology 2018-02-12
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