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Allan R. Jones

ORCID: 0000-0001-6169-9749
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A5066235424
Research Areas
  • Single-cell and spatial transcriptomics
  • Gene expression and cancer classification
  • Cell Image Analysis Techniques
  • Bioinformatics and Genomic Networks
  • Neuroinflammation and Neurodegeneration Mechanisms
  • Neural dynamics and brain function
  • Neuroscience and Neuropharmacology Research
  • Neurogenesis and neuroplasticity mechanisms
  • Functional Brain Connectivity Studies
  • Photoreceptor and optogenetics research
  • Laser-induced spectroscopy and plasma
  • Neuroscience and Neural Engineering
  • Congenital heart defects research
  • Combustion and flame dynamics
  • Epigenetics and DNA Methylation
  • Plasma and Flow Control in Aerodynamics
  • Combustion and Detonation Processes
  • Advanced Biosensing Techniques and Applications
  • Graphite, nuclear technology, radiation studies
  • Advanced Power Generation Technologies
  • Photosynthetic Processes and Mechanisms
  • Neurobiology and Insect Physiology Research
  • Sleep and Wakefulness Research
  • Genomics and Phylogenetic Studies
  • Health, Environment, Cognitive Aging

Allen Institute for Brain Science
 2013-2022

Allen Institute
 2013-2022

Baker Hughes (United States)
 2022

KU Leuven
 2020

Evangelical Theological Faculty
 2020

Temple University
 2015

University of Johannesburg
 2014

Imperial College London
 1971-2008

Aarhus University
 2007

University of South Florida
 2006

 A robust and high-throughput Cre reporting and characterization system for the whole mouse brain
OPENALEX - Publications 
Linda Madisen Theresa A. Zwingman Susan M. Sunkin Seung Wook Oh Hatim A. Zariwala and 7 more Hong Gu Lydia Ng Richard D. Palmiter Michael Hawrylycz Allan R. Jones Ed S. Lein Hongkui Zeng

10.1038/nn.2467 article EN Nature Neuroscience 2009-12-20
 An anatomically comprehensive atlas of the adult human brain transcriptome
OPENALEX - Publications 
Michael Hawrylycz Ed S. Lein Angela Guillozet-Bongaarts Elaine Shen Lydia Ng and 62 more Jeremy A. Miller Louie N. van de Lagemaat Kimberly A. Smith Amanda Ebbert Zackery L. Riley Chris Abajian Christian F. Beckmann Amy Bernard Darren Bertagnolli Andrew F. Boe Preston Cartagena M. Mallar Chakravarty Mike Chapin Jimmy Chong Rachel Dalley Barry Daly Chinh Dang Suvro Datta Nick Dee Tim Dolbeare Vance Faber David Feng David R. Fowler Jeff Goldy Benjamin W. Gregor Zeb Haradon David R. Haynor John G. Hohmann Steve Horvath Robert Howard Andreas Jeromin Jayson M. Jochim Marty Kinnunen Christopher Lau Evan T. Lazarz Changkyu Lee Tracy Lemon Ling Li Yang Li John A. Morris Caroline C. Overly Patrick D. Parker Sheana Parry Melissa Reding Joshua J. Royall Jay Schulkin Adolfo Sequeira Clifford R. Slaughterbeck Simón C. Smith Andy J. Sodt Susan M. Sunkin Beryl Swanson Marquis P. Vawter Derric Williams Paul Wohnoutka H. Ronald Zielke Daniel H. Geschwind Patrick R. Hof Stephen M. Smith Christof Koch Seth G. N. Grant Allan R. Jones

10.1038/nature11405 article EN Nature 2012-09-01
 Functional Discovery via a Compendium of Expression Profiles
OPENALEX - Publications 
Timothy R. Hughes Matthew J. Marton Allan R. Jones CJ Roberts Roland Stoughton and 17 more Christopher D. Armour Holly A. Bennett Ernest M. Coffey Hongyue Dai Yudong D. He M. Kidd Amy King Michael R. Meyer David Slade Pek Yee Lum S. Stepaniants Daniel Shoemaker Daniel Gachotte Kalpana Chakraburtty Julian A. Simon Martin Bard Stephen Friend

10.1016/s0092-8674(00)00015-5 article EN publisher-specific-oa Cell 2000-07-01
 A mesoscale connectome of the mouse brain
OPENALEX - Publications 
Seung Wook Oh Julie A. Harris Lydia Ng Brent Winslow Nicholas Cain and 29 more Ştefan Mihalaş Quanxin Wang Chris Lau Leonard Kuan Alex M. Henry Marty Mortrud Benjamin Ouellette Thuc Nghi Nguyen Staci A. Sorensen Clifford R. Slaughterbeck Wayne Wakeman Li Yang David Feng Anh Ho Eric Nicholas Karla E. Hirokawa Phillip Bohn Kevin Joines Hanchuan Peng Michael Hawrylycz John W. Phillips John G. Hohmann Paul Wohnoutka Charles R. Gerfen Christof Koch Amy Bernard Chinh Dang Allan R. Jones Hongkui Zeng

10.1038/nature13186 article EN Nature 2014-04-01
 Shared and distinct transcriptomic cell types across neocortical areas
OPENALEX - Publications 
Bosiljka Tasic Zizhen Yao Lucas T. Graybuck Kimberly A. Smith Thuc Nghi Nguyen and 43 more Darren Bertagnolli Jeff Goldy Emma Garren Michael N. Economo Sarada Viswanathan Osnat Penn Trygve E. Bakken Vilas Menon Jeremy A. Miller Olivia Fong Karla E. Hirokawa Kanan Lathia Christine Rimorin Michael Tieu Rachael Larsen Tamara Casper Eliza Barkan Matthew Kroll Sheana Parry Nadiya V. Shapovalova Daniel Hirschstein Julie Pendergraft Heather A. Sullivan Tae Kyung Kim Aaron Szafer Nick Dee Peter A. Groblewski Ian R. Wickersham Ali Çetin Julie A. Harris Boaz P. Levi Susan M. Sunkin Linda Madisen Tanya L. Daigle Loren L. Looger Amy Bernard John W. Phillips Ed S. Lein Michael Hawrylycz Karel Svoboda Allan R. Jones Christof Koch Hongkui Zeng

10.1038/s41586-018-0654-5 article EN Nature 2018-10-25
 Conserved cell types with divergent features in human versus mouse cortex
OPENALEX - Publications 
Rebecca D. Hodge Trygve E. Bakken Jeremy A. Miller Kimberly A. Smith Eliza Barkan and 59 more Lucas T. Graybuck Jennie Close Brian Long Nelson Johansen Osnat Penn Zizhen Yao Jeroen Eggermont Thomas Höllt Boaz P. Levi Soraya I. Shehata Brian D. Aevermann Allison Beller Darren Bertagnolli Krissy Brouner Tamara Casper Charles Cobbs Rachel Dalley Nick Dee Song‐Lin Ding Richard G. Ellenbogen Olivia Fong Emma Garren Jeff Goldy Ryder P. Gwinn Daniel Hirschstein C. Dirk Keene Mohamed Keshk Andrew L. Ko Kanan Lathia Ahmed Mahfouz Zoe Maltzer Mary McGraw Thuc Nghi Nguyen Julie Nyhus Jeffrey G. Ojemann Aaron Oldre Sheana Parry Shannon Reynolds Christine Rimorin Nadiya V. Shapovalova Saroja Somasundaram Aaron Szafer Elliot R. Thomsen Michael Tieu Gerald Quon Richard H. Scheuermann Rafael Yuste Susan M. Sunkin Boudewijn P. F. Lelieveldt David Feng Lydia Ng Amy Bernard Michael Hawrylycz John W. Phillips Bosiljka Tasic Hongkui Zeng Allan R. Jones Christof Koch Ed S. Lein

10.1038/s41586-019-1506-7 article EN Nature 2019-08-21
 A toolbox of Cre-dependent optogenetic transgenic mice for light-induced activation and silencing
OPENALEX - Publications 
Linda Madisen Tianyi Mao Henner Koch Jia-Min Zhuo Antal Berényi and 17 more Shigeyoshi Fujisawa Yun‐Wei A. Hsu Alfredo J. Garcia Xuan Gu Sébastien Zanella Jolene Kidney Hong Gu Yimei Mao Bryan M. Hooks Edward S. Boyden György Buzsáki Jan‐Marino Ramirez Allan R. Jones Karel Svoboda Xue Han Eric E. Turner Hongkui Zeng

10.1038/nn.3078 article EN Nature Neuroscience 2012-03-25
 Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer
OPENALEX - Publications 
Timothy R. Hughes Mao Mao Allan R. Jones Julja Burchard Matthew J. Marton and 19 more Karen W. Shannon Steven M. Lefkowitz Michael Ziman Janell M. Schelter Michael R. Meyer Sumire Kobayashi Colleen Davis Hongyue Dai Yudong D. He Sergey B. Stephaniants Guy Cavet Wynn L. Walker Anne West Ernest M. Coffey Daniel Shoemaker Roland Stoughton Alan P. Blanchard Stephen Friend Peter S. Linsley

10.1038/86730 article EN Nature Biotechnology 2001-04-01
 Transcriptional landscape of the prenatal human brain
OPENALEX - Publications 
Jeremy A. Miller Song‐Lin Ding Susan M. Sunkin Kimberly A. Smith Lydia Ng and 75 more Aaron Szafer Amanda Ebbert Zackery L. Riley Joshua J. Royall Kaylynn Aiona James M. Arnold Crissa Bennet Darren Bertagnolli Krissy Brouner Stephanie Butler Shiella Caldejon Anita Carey Christine Cuhaciyan Rachel Dalley Nick Dee Tim Dolbeare Benjamin A.C. Facer David Feng Tim Fliss Garrett Gee Jeff Goldy Lindsey Gourley Benjamin W. Gregor Guangyu Gu Robert Howard Jayson M. Jochim Chihchau L. Kuan Christopher Lau Chang‐Kyu Lee Felix Lee Tracy Lemon Phil Lesnar Bergen McMurray Naveed Mastan Nerick F. Mosqueda Theresa Naluai-Cecchini N. Kiet Ngo Julie Nyhus Aaron Oldre Eric C. Olson Jody Parente Patrick D. Parker Sheana Parry Allison Stevens Mihovil Pletikos Melissa Reding Kate Roll David Sandman Melaine Sarreal Sheila Shapouri Nadiya V. Shapovalova Elaine Shen Nathan Sjoquist Clifford R. Slaughterbeck Michael W. Smith Andy J. Sodt Derric Williams Lilla Zöllei Bruce Fischl Mark Gerstein Daniel H. Geschwind Ian A. Glass Michael Hawrylycz Robert F. Hevner Hao Huang Allan R. Jones James A. Knowles Pat Levitt John W. Phillips Nenad Šestan Paul Wohnoutka Chinh Dang Amy Bernard John G. Hohmann Ed S. Lein

10.1038/nature13185 article EN Nature 2014-04-01
 Chloroplast Transformation in Chlamydomonas with High Velocity Microprojectiles
OPENALEX - Publications 
John E. Boynton Nicholas W. Gillham Elizabeth H. Harris Jonathan P. Hosler Anita Johnson and 6 more Allan R. Jones Barbara L. Randolph-Anderson Dominique Robertson Ted M. Klein Katherine B. Shark John C. Sanford

Bombardment of three mutants the chloroplast atpB gene Chlamydomonas reinhardtii with high-velocity tungsten microprojectiles that were coated cloned DNA carrying wild-type permanently restored photosynthetic capacity algae. In most transformants one mutants, a fragment 2.5-kilobase deletion was to normal size by homologous replacement event; in about 25 percent restriction 50 100 base pairs smaller or larger than wild type. About one-fourth this mutant contained unintegrated donor plasmid...

10.1126/science.2897716 article EN Science 1988-06-10
 Integrative functional genomic analysis of human brain development and neuropsychiatric risks
OPENALEX - Publications 
Mingfeng Li Gabriel Santpere Yuka Imamura Kawasawa Oleg V. Evgrafov Forrest O. Gulden and 95 more Sirisha Pochareddy Susan M. Sunkin Zhen Li Yurae Shin Ying Zhu André M. M. Sousa Donna M. Werling Robert R. Kitchen Hyo Jung Kang Mihovil Pletikos Jinmyung Choi Sydney Muchnik Xuming Xu Daifeng Wang Belén Lorente-Galdós Shuang Liu Paola Giusti‐Rodríguez Hyejung Won Christiaan de Leeuw Antonio F. Pardiñas Ming Hu Fulai Jin Yun Li Michael J. Owen Michael O’Donovan James Walters Daniëlle Posthuma Mark A. Reimers Pat Levitt Daniel R. Weinberger Thomas M. Hyde Joel E. Kleinman Daniel H. Geschwind Michael Hawrylycz Matthew W. State Stephan Sanders Patrick F. Sullivan Mark Gerstein Ed S. Lein James A. Knowles Nenad Šestan A. Jeremy Willsey Aaron Oldre Aaron Szafer Adrian Camarena Adriana Cherskov Alexander W. Charney Alexej Abyzov Alexey Kozlenkov Alexias Safi Allan R. Jones Allison E. Ashley‐Koch Amanda Ebbert Amanda J. Price Amanda Sekijima Amira Kefi Amy Bernard Anahita Amiri Andrea Sboner Andrew E. Clark Andrew E. Jaffe Andrew T.N. Tebbenkamp Andy J. Sodt Angie Guillozet‐Bongaarts Angus C. Nairn Anita Carey Anita Hüttner Ann Chervenak Anna Szekely Annie W. Shieh Arif Harmanci Barbara K. Lipska Becky C. Carlyle Ben W. Gregor Bibi Kassim Brooke Sheppard Candace Bichsel Chang-Gyu Hahn Chang-Kyu Lee Chao Chen Chihchau L. Kuan Chinh Dang Chris Lau Christine Cuhaciyan Christoper Armoskus Christopher E. Mason Chunyu Liu Cliff Slaughterbeck Crissa Bennet Dalila Pinto Damon Polioudakis Daniel Franjic Daniel J. Miller Darren Bertagnolli David A. Lewis

INTRODUCTION The brain is responsible for cognition, behavior, and much of what makes us uniquely human. development the a highly complex process, this process reliant on precise regulation molecular cellular events grounded in spatiotemporal transcriptome. Disruption can lead to neuropsychiatric disorders. RATIONALE regulatory, epigenomic, transcriptomic features human have not been comprehensively compiled across time, regions, or cell types. Understanding etiology disorders requires...

10.1126/science.aat7615 article EN Science 2018-12-14
 Hierarchical organization of cortical and thalamic connectivity
OPENALEX - Publications 
Julie A. Harris Ştefan Mihalaş Karla E. Hirokawa Jennifer D. Whitesell Hannah Choi and 37 more Amy Bernard Phillip Bohn Shiella Caldejon Linzy Casal Andrew Cho Aaron Feiner David Feng Nathalie Gaudreault Charles R. Gerfen Nile Graddis Peter A. Groblewski Alex M. Henry Anh Ho Robert Howard Joseph E. Knox Leonard Kuan Xiuli Kuang Jérôme Lecoq Phil Lesnar Yaoyao Li Jennifer Luviano Stephen J. McConoughey Marty Mortrud Maitham Naeemi Lydia Ng Seung Wook Oh Benjamin Ouellette Elise Shen Staci A. Sorensen Wayne Wakeman Quanxin Wang Yun Wang Ali Williford John W. Phillips Allan R. Jones Christof Koch Hongkui Zeng

10.1038/s41586-019-1716-z article EN Nature 2019-10-30
 Canonical genetic signatures of the adult human brain
OPENALEX - Publications 
Michael Hawrylycz Jeremy A. Miller Vilas Menon David Feng Tim Dolbeare and 25 more Angela Guillozet-Bongaarts Anil G. Jegga Bruce J. Aronow Chang‐Kyu Lee Amy Bernard Matthew F. Glasser Donna Dierker Jörg Menche Aaron Szafer Forrest Collman Pascal Grange Kenneth A. Berman Ştefan Mihalaş Zizhen Yao Lance Stewart Albert‐László Barabási Jay Schulkin John W. Phillips Lydia Ng Chinh Dang David R. Haynor Allan R. Jones David C. Van Essen Christof Koch Ed S. Lein

10.1038/nn.4171 article EN Nature Neuroscience 2015-11-16
 An anatomic transcriptional atlas of human glioblastoma
OPENALEX - Publications 
Ralph B. Puchalski Nameeta Shah Jeremy A. Miller Rachel Dalley Steve R. Nomura and 75 more Jae-Guen Yoon Kimberly A. Smith Michael Lankerovich Darren Bertagnolli Kris Bickley Andrew F. Boe Krissy Brouner Stephanie Butler Shiella Caldejon Mike Chapin Suvro Datta Nick Dee Tsega Desta Tim Dolbeare Nadezhda Dotson Amanda Ebbert David Feng Xueli Feng Michael Fisher Garrett Gee Jeff Goldy Lindsey Gourley Benjamin W. Gregor Guangyu Gu Nika Hejazinia John G. Hohmann Parvinder Hothi Robert Howard Kevin Joines Ali Kriedberg Leonard Kuan Chris Lau Felix Lee Hwahyung Lee Tracy Lemon Fuhui Long Naveed Mastan Erika Mott Chantal Murthy Kiet Ngo Eric N. Olson Melissa Reding Zack L. Riley David Rosen David Sandman Nadiya V. Shapovalova Clifford R. Slaughterbeck Andrew Sodt Graham Stockdale Aaron Szafer Wayne Wakeman Paul Wohnoutka Steven J. White D. C. B. Marsh Robert Rostomily Lydia Ng Chinh Dang Allan R. Jones Bart P. Keogh Haley Gittleman Jill S. Barnholtz‐Sloan Patrick J. Cimino Megha Uppin C. Dirk Keene Farrokh Farrokhi Justin D. Lathia Michael E. Berens Antonio Iavarone Amy Bernard Ed S. Lein John W. Phillips Steven Rostad Charles Cobbs Michael Hawrylycz Greg Foltz

Glioblastoma is an aggressive brain tumor that carries a poor prognosis. The tumor's molecular and cellular landscapes are complex, their relationships to histologic features routinely used for diagnosis unclear. We present the Ivy Atlas, anatomically based transcriptional atlas of human glioblastoma aligns individual with genomic alterations gene expression patterns, thus assigning information most important morphologic hallmarks tumor. its clinical database freely accessible online data...

10.1126/science.aaf2666 article EN Science 2018-05-10
 Widespread aneuploidy revealed by DNA microarray expression profiling
OPENALEX - Publications 
Timothy R. Hughes Chris Roberts Hongyue Dai Allan R. Jones Markus R. Meyer and 7 more David Slade Julja Burchard Sally Dow Teresa R. Ward M. Kidd Stephen Friend Matthew J. Marton

10.1038/77116 article EN Nature Genetics 2000-07-01
 Large-Scale Cellular-Resolution Gene Profiling in Human Neocortex Reveals Species-Specific Molecular Signatures
OPENALEX - Publications 
Hongkui Zeng Elaine Shen John G. Hohmann Seung Wook Oh Amy Bernard and 17 more Joshua J. Royall Katie Glattfelder Susan M. Sunkin John Morris Angela Guillozet-Bongaarts Kimberly A. Smith Amanda Ebbert Beryl Swanson Leonard Kuan Damon T. Page Caroline C. Overly Ed S. Lein Michael Hawrylycz Patrick R. Hof Thomas M. Hyde Joel E. Kleinman Allan R. Jones

10.1016/j.cell.2012.02.052 article EN publisher-specific-oa Cell 2012-04-01
 Genomic Anatomy of the Hippocampus
OPENALEX - Publications 
Carol L. Thompson Dev S. Pathak Andreas Jeromin Lydia Ng Cameron Ross MacPherson and 11 more Marty Mortrud Allison Cusick Zackery L. Riley Susan M. Sunkin Amy Bernard Ralph B. Puchalski Fred H. Gage Allan R. Jones Vladimir B. Bajić Michael Hawrylycz Ed S. Lein

10.1016/j.neuron.2008.12.008 article EN publisher-specific-oa Neuron 2008-12-01
 A comprehensive transcriptional map of primate brain development
OPENALEX - Publications 
Trygve E. Bakken Jeremy A. Miller Song‐Lin Ding Susan M. Sunkin Kimberly A. Smith and 94 more Lydia Ng Aaron Szafer Rachel Dalley Joshua J. Royall Tracy Lemon Sheila Shapouri Kaylynn Aiona James M. Arnold Jeffrey Bennett Darren Bertagnolli Kristopher Bickley Andrew F. Boe Krissy Brouner Stephanie Butler Emi J. Byrnes Shiella Caldejon Anita Carey Shelby Cate Mike Chapin Jefferey Chen Nick Dee Tsega Desta Tim Dolbeare Nadia Dotson Amanda Ebbert Erich Fulfs Garrett Gee Terri L. Gilbert Jeff Goldy Lindsey Gourley Ben W. Gregor Guangyu Gu Jon G. Hall Zeb Haradon David R. Haynor Nika Hejazinia Anna Hoerder‐Suabedissen Robert Howard Jay Jochim Marty Kinnunen Ali Kriedberg Chihchau L. Kuan Christopher Lau Chang‐Kyu Lee Felix Lee Lon T. Luong Naveed Mastan Ryan May J.L Melchor Nerick F. Mosqueda Erika Mott Kiet Ngo Julie Nyhus Aaron Oldre Eric N. Olson Jody Parente Patrick D. Parker Sheana Parry Julie Pendergraft Lydia Potekhina Melissa Reding Zackery L. Riley T. Guy Roberts Brandon M. A. Rogers Kate Roll David W. Rosen David Sandman Melaine Sarreal Nadiya V. Shapovalova Shi Shu Nathan Sjoquist Andy J. Sodt Robbie Townsend Lissette S. Velasquez Udi Wagley Wayne Wakeman Cassandra White Crissa Bennett Jennifer E. Wu Rob Young Brian L. Youngstrom Paul Wohnoutka Richard A. Gibbs Jeffrey Rogers John G. Hohmann Michael Hawrylycz Robert F. Hevner Zoltán Molnár John W. Phillips Chinh Dang Allan R. Jones David G. Amaral Amy Bernard Ed S. Lein

10.1038/nature18637 article EN Nature 2016-07-01
 Comprehensive cellular‐resolution atlas of the adult human brain
OPENALEX - Publications 
Song‐Lin Ding Joshua J. Royall Susan M. Sunkin Lydia Ng Benjamin A.C. Facer and 35 more Phil Lesnar Angie Guillozet‐Bongaarts Bergen McMurray Aaron Szafer Tim Dolbeare Allison Stevens Lee S. Tirrell Thomas Benner Shiella Caldejon Rachel Dalley Nick Dee Christopher Lau Julie Nyhus Melissa Reding Zackery L. Riley David Sandman Elaine Shen André van der Kouwe Ani Varjabedian Michelle Write Lilla Zöllei Chinh Dang James A. Knowles Christof Koch John W. Phillips Nenad Šestan Paul Wohnoutka H. Ronald Zielke John G. Hohmann Allan R. Jones Amy Bernard Michael Hawrylycz Patrick R. Hof Bruce Fischl Ed S. Lein

ABSTRACT Detailed anatomical understanding of the human brain is essential for unraveling its functional architecture, yet current reference atlases have major limitations such as lack whole‐brain coverage, relatively low image resolution, and sparse structural annotation. We present first digital atlas to incorporate neuroimaging, high‐resolution histology, chemoarchitecture across a complete adult female brain, consisting magnetic resonance imaging (MRI), diffusion‐weighted (DWI), 1,356...

10.1002/cne.24080 article EN cc-by-nc-nd The Journal of Comparative Neurology 2016-07-15
 A High-Resolution Spatiotemporal Atlas of Gene Expression of the Developing Mouse Brain
OPENALEX - Publications 
Carol L. Thompson Lydia Ng Vilas Menon Salvador Martı́nez Changkyu Lee and 30 more Katie Glattfelder Susan M. Sunkin Alex M. Henry Christopher Lau Chinh Dang Raquel García‐López Almudena Martinez-Ferre Ana Pombero John L.R. Rubenstein Wayne Wakeman John G. Hohmann Nick Dee Andrew Sodt Rob Young Kimberly A. Smith Thuc Nghi Nguyen Jolene Kidney Leonard Kuan Andreas Jeromin Ajamete Kaykas Jeremy A. Miller Damon T. Page Geri Orta Amy Bernard Zackery L. Riley Simón C. Smith Paul Wohnoutka Michael Hawrylycz Luis Puelles Allan R. Jones

10.1016/j.neuron.2014.05.033 article EN publisher-specific-oa Neuron 2014-06-19
 An anatomic gene expression atlas of the adult mouse brain
OPENALEX - Publications 
Lydia Ng Amy Bernard Chris Lau Caroline C. Overly Hong‐Wei Dong and 13 more Chihchau L. Kuan Dev S. Pathak Susan M. Sunkin Chinh Dang Jason W. Bohland Hemant Bokil Partha P. Mitra Luis Puelles John G. Hohmann David J. Anderson Ed S. Lein Allan R. Jones Michael Hawrylycz

10.1038/nn.2281 article EN Nature Neuroscience 2009-02-15
 A Proposal for a Coordinated Effort for the Determination of Brainwide Neuroanatomical Connectivity in Model Organisms at a Mesoscopic Scale
OPENALEX - Publications 
Jason W. Bohland Caizhi Wu Helen Barbas Hemant Bokil Mihail Bota and 32 more Hans C. Breiter Hollis T. Cline John C. Doyle Peter Freed Ralph J. Greenspan Suzanne N. Haber Michael Hawrylycz Daniel G. Herrera Claus C. Hilgetag Z. Josh Huang Allan R. Jones Edward G. Jones Harvey J. Karten David Kleinfeld Rolf Kötter Henry A. Lester John M. Lin Brett D. Mensh Shawn Mikula Jaak Panksepp Joseph L. Price Joseph E. Safdieh Clifford B. Saper Nicholas D. Schiff Jeremy D. Schmahmann Bruce Stillman Karel Svoboda Larry W. Swanson Arthur W. Toga David C. Van Essen James D. Watson Partha P. Mitra

In this era of complete genomes, our knowledge neuroanatomical circuitry remains surprisingly sparse. Such is however critical both for basic and clinical research into brain function. Here we advocate a concerted effort to fill gap, through systematic, experimental mapping neural circuits at mesoscopic scale resolution suitable comprehensive, brain-wide coverage, using injections tracers or viral vectors. We detail the scientific medical rationale briefly review existing techniques. define...

10.1371/journal.pcbi.1000334 article EN cc-by PLoS Computational Biology 2009-03-26
 The Allen Human Brain Atlas
OPENALEX - Publications 
Elaine Shen Caroline C. Overly Allan R. Jones

10.1016/j.tins.2012.09.005 article EN Trends in Neurosciences 2012-10-17
 Transcriptional Architecture of the Primate Neocortex
OPENALEX - Publications 
Amy Bernard Laura S. Lubbers Keith Q. Tanis Rui Luo Alexei A. Podtelezhnikov and 19 more Eva M. Finney Mollie McWhorter Kyle Serikawa Tracy Lemon Rebecca J. Morgan Catherine Copeland Kimberly A. Smith Vivian Cullen Jeremy Davis‐Turak Chang‐Kyu Lee Susan M. Sunkin Andrey Loboda David M. Levine David J. Stone Michael Hawrylycz CJ Roberts Allan R. Jones Daniel H. Geschwind Ed S. Lein

10.1016/j.neuron.2012.03.002 article EN publisher-specific-oa Neuron 2012-03-01
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