Christiaan de Leeuw

ORCID: 0000-0003-1076-9828
Publications
Citations
Views
---
Saved
---
About
Contact & Profiles
Research Areas
  • Genetic Associations and Epidemiology
  • Bioinformatics and Genomic Networks
  • Genetic Mapping and Diversity in Plants and Animals
  • Epigenetics and DNA Methylation
  • Genetics and Neurodevelopmental Disorders
  • Cognitive Abilities and Testing
  • Nutrition, Genetics, and Disease
  • Health, Environment, Cognitive Aging
  • Genomics and Rare Diseases
  • Birth, Development, and Health
  • Machine Learning in Bioinformatics
  • Genetic Syndromes and Imprinting
  • Genetic and phenotypic traits in livestock
  • Genomic variations and chromosomal abnormalities
  • Liver Disease Diagnosis and Treatment
  • Coral and Marine Ecosystems Studies
  • Marine Sponges and Natural Products
  • Sleep and related disorders
  • Genomics and Phylogenetic Studies
  • Gene expression and cancer classification
  • Functional Brain Connectivity Studies
  • Single-cell and spatial transcriptomics
  • Bipolar Disorder and Treatment
  • Migraine and Headache Studies
  • Advanced Neuroimaging Techniques and Applications

Amsterdam Neuroscience
2015-2025

Vrije Universiteit Amsterdam
2015-2025

Wageningen University & Research
2020-2024

University of Amsterdam
2013-2018

Cognitive Research (United States)
2017

Radboud University Nijmegen
2012-2017

Amsterdam UMC Location Vrije Universiteit Amsterdam
2013-2015

Naturalis Biodiversity Center
2013-2014

Rotterdam University of Applied Sciences
1998

University Medical Center Utrecht
1998

By aggregating data for complex traits in a biologically meaningful way, gene and gene-set analysis constitute valuable addition to single-marker analysis. However, although various methods currently exist, they generally suffer from number of issues. Statistical power most is strongly affected by linkage disequilibrium between markers, multi-marker associations are often hard detect, the reliance on permutation compute p-values tends make computationally very expensive. To address these...

10.1371/journal.pcbi.1004219 article EN cc-by PLoS Computational Biology 2015-04-17
Mingfeng Li Gabriel Santpere Yuka Imamura Kawasawa Oleg V. Evgrafov Forrest O. Gulden and 95 more Sirisha Pochareddy Susan M. Sunkin Zhen Li Yurae Shin Ying Zhu André M. M. Sousa Donna M. Werling Robert R. Kitchen Hyo Jung Kang Mihovil Pletikos Jinmyung Choi Sydney Muchnik Xuming Xu Daifeng Wang Belén Lorente-Galdós Shuang Liu Paola Giusti‐Rodríguez Hyejung Won Christiaan de Leeuw Antonio F. Pardiñas Ming Hu Fulai Jin Yun Li Michael J. Owen Michael O’Donovan James Walters Daniëlle Posthuma Mark A. Reimers Pat Levitt Daniel R. Weinberger Thomas M. Hyde Joel E. Kleinman Daniel H. Geschwind Michael Hawrylycz Matthew W. State Stephan Sanders Patrick F. Sullivan Mark Gerstein Ed S. Lein James A. Knowles Nenad Šestan A. Jeremy Willsey Aaron Oldre Aaron Szafer Adrian Camarena Adriana Cherskov Alexander W. Charney Alexej Abyzov Alexey Kozlenkov Alexias Safi Allan R. Jones Allison E. Ashley‐Koch Amanda Ebbert Amanda J. Price Amanda Sekijima Amira Kefi Amy Bernard Anahita Amiri Andrea Sboner Andrew E. Clark Andrew E. Jaffe Andrew T.N. Tebbenkamp Andy J. Sodt Angie Guillozet‐Bongaarts Angus C. Nairn Anita Carey Anita Hüttner Ann Chervenak Anna Szekely Annie W. Shieh Arif Harmanci Barbara K. Lipska Becky C. Carlyle Ben W. Gregor Bibi Kassim Brooke Sheppard Candace Bichsel Chang-Gyu Hahn Chang-Kyu Lee Chao Chen Chihchau L. Kuan Chinh Dang Chris Lau Christine Cuhaciyan Christoper Armoskus Christopher E. Mason Chunyu Liu Cliff Slaughterbeck Crissa Bennet Dalila Pinto Damon Polioudakis Daniel Franjic Daniel J. Miller Darren Bertagnolli David A. Lewis

INTRODUCTION The brain is responsible for cognition, behavior, and much of what makes us uniquely human. development the a highly complex process, this process reliant on precise regulation molecular cellular events grounded in spatiotemporal transcriptome. Disruption can lead to neuropsychiatric disorders. RATIONALE regulatory, epigenomic, transcriptomic features human have not been comprehensively compiled across time, regions, or cell types. Understanding etiology disorders requires...

10.1126/science.aat7615 article EN Science 2018-12-14
Aysu Okbay Yeda Wu Nancy Wang Hariharan Jayashankar Michael Bennett and 95 more Seyed Moeen Nehzati Julia Sidorenko Hyeokmoon Kweon Grant Goldman Tamara Gjorgjieva Yunxuan Jiang Barry Hicks Chao Tian David A. Hinds Rafael Ahlskog Patrik K. E. Magnusson Sven Oskarsson Caroline Hayward Archie Campbell David J. Porteous Jeremy Freese Pamela Herd Michelle Agee Babak Alipanahi Adam Auton Robert K. Bell Katarzyna Bryc Sarah L. Elson Pierre Fontanillas Nicholas A. Furlotte David A. Hinds Karen E. Huber Aaron Kleinman Nadia K. Litterman Jennifer C. McCreight Matthew H. McIntyre Joanna L. Mountain Carrie A. M. Northover Steven J. Pitts J. Fah Sathirapongsasuti Olga V. Sazonova Janie F. Shelton Suyash Shringarpure Joyce Y. Tung Vladimir Vacic Catherine H. Wilson Mark Alan Fontana Tune H. Pers Cornelius A. Rietveld Guo‐Bo Chen Valur Emilsson S. Fleur W. Meddens Joseph K. Pickrell Kevin Thom Pascal Timshel Ronald de Vlaming Abdel Abdellaoui Tarunveer S. Ahluwalia Jonas Bacelis Clemens Baumbach Gyða Björnsdóttir J Brandsma Maria Pina Concas Jaime Derringer Tessel E. Galesloot Giorgia Girotto Richa Gupta Leanne M. Hall Sarah E. Harris Edith Hofer Momoko Horikoshi Jennifer E. Huffman Kadri Kaasik Ioanna Panagiota Kalafati Robert Karlsson Jari Lahti Sven J. van der Lee Christiaan de Leeuw Penelope A. Lind Karl‐Oskar Lindgren Tian Liu Massimo Mangino Jonathan Marten Evelin Mihailov Michael Miller Peter J. van der Most Christopher Oldmeadow Antony Payton Natalia Pervjakova Wouter J. Peyrot Yong Qian Olli T. Raitakari Rico Rueedi Erika Salvi Börge Schmidt Katharina E. Schraut Jianxin Shi Albert V. Smith Raymond A. Poot Beaté St Pourcain

Abstract We conduct a genome-wide association study (GWAS) of educational attainment (EA) in sample ~3 million individuals and identify 3,952 approximately uncorrelated genome-wide-significant single-nucleotide polymorphisms (SNPs). A polygenic predictor, or index (PGI), explains 12–16% EA variance contributes to risk prediction for ten diseases. Direct effects (i.e., controlling parental PGIs) explain roughly half the PGI’s magnitude with other phenotypes. The correlation between mate-pair...

10.1038/s41588-022-01016-z article EN cc-by Nature Genetics 2022-03-31

Abstract Single-cell RNA sequencing (scRNA-seq) data allows to create cell type specific transcriptome profiles. Such profiles can be aligned with genome-wide association studies (GWASs) implicate specificity of the traits. Current methods typically rely only on a small subset available scRNA-seq datasets, and integrating multiple datasets is hampered by complex batch effects. Here we collated 43 publicly datasets. We propose 3-step workflow conditional analyses within between circumventing...

10.1038/s41467-019-11181-1 article EN cc-by Nature Communications 2019-07-19
Riccardo E. Marioni Stuart J. Ritchie Peter K. Joshi Saskia P. Hagenaars Aysu Okbay and 95 more Krista Fischer Mark J. Adams W. David Hill Gail Davies Réka Nagy Carmen Amador Kristi Läll Andres Metspalu David C. Liewald Archie Campbell James F. Wilson Caroline Hayward Tõnu Esko David J. Porteous Catharine R. Galé Ian J. Deary Aysu Okbay Jonathan Beauchamp Mark Alan Fontana James J. Lee Tune H. Pers Cornelius A. Rietveld Patrick Turley Guo-Bo Chen Valur Emilsson S. Fleur W. Meddens Sven Oskarsson Joseph K. Pickrell Kevin Thom Pascal Timshel Ronald de Vlaming Abdel Abdellaoui Tarunveer S. Ahluwalia Jonas Bacelis Clemens Baumbach Gyða Björnsdóttir J Brandsma Maria Pina Concas Jaime Derringer Nicholas A. Furlotte Tessel E. Galesloot Giorgia Girotto Richa Gupta Leanne M. Hall Sarah E. Harris Edith Hofer Momoko Horikoshi Jennifer E. Huffman Kadri Kaasik Ioanna Panagiota Kalafati Robert Karlsson Augustine Kong Jari Lahti Sven J. van der Lee Christiaan de Leeuw Penelope A. Lind Karl‐Oskar Lindgren Tian Liu Massimo Mangino Jonathan Marten Evelin Mihailov Michael Miller Peter J. van der Most Christopher Oldmeadow Antony Payton Natalia Pervjakova Wouter J. Peyrot Yong Qian Olli T. Raitakari Rico Rueedi Erika Salvi Börge Schmidt Katharina E. Schraut Jianxin Shi Albert V. Smith Raymond A. Poot Beaté St Pourcain Alexander Teumer Guðmar Þorleifsson Niek Verweij Dragana Vuckovic Juergen Wellmann Harm-Jan Westra Jingyun Yang Wei Zhao Zhihong Zhu Behrooz Z. Alizadeh Najaf Amin Andrew Bakshi Sebastian E. Baumeister Ginevra Biino Klaus Bønnelykke Patricia A. Boyle Harry Campbell Francesco P. Cappuccio

Educational attainment is associated with many health outcomes, including longevity. It also known to be substantially heritable. Here, we used data from three large genetic epidemiology cohort studies (Generation Scotland, n = ∼17,000; UK Biobank, ∼115,000; and the Estonian ∼6,000) test whether education-linked variants can predict lifespan length. We did so by using members' polygenic profile score for education their parents' Across cohorts, meta-analysis showed that a 1 SD higher was...

10.1073/pnas.1605334113 article EN Proceedings of the National Academy of Sciences 2016-10-31

Schizophrenia is a highly polygenic brain disorder. The main hypothesis for disease etiology in schizophrenia primarily focuses on the role of dysfunctional synaptic transmission. Previous studies have therefore directed their investigations toward neuronal dysfunction. However, recent shown that apart from neurons, glial cells also play major Therefore, we investigated potential causal involvement 3 principle cell lineages risk to schizophrenia. We performed functional gene set analysis...

10.1093/schbul/sbt109 article EN Schizophrenia Bulletin 2013-08-16
Coming Soon ...