Wei Xü

ORCID: 0000-0003-0581-7872
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About
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Research Areas
  • Plant Molecular Biology Research
  • Lipid metabolism and biosynthesis
  • Genetic diversity and population structure
  • Plant biochemistry and biosynthesis
  • Photosynthetic Processes and Mechanisms
  • Toxin Mechanisms and Immunotoxins
  • Plant Virus Research Studies
  • Identification and Quantification in Food
  • Plant nutrient uptake and metabolism
  • Phytochemistry and Bioactive Compounds
  • Antimicrobial Peptides and Activities
  • Plant-Microbe Interactions and Immunity
  • Animal Nutrition and Physiology
  • Plant Stress Responses and Tolerance
  • Chromosomal and Genetic Variations
  • Microbial Metabolic Engineering and Bioproduction
  • Plant Gene Expression Analysis
  • Meat and Animal Product Quality
  • Plant Pathogens and Fungal Diseases
  • Plant Reproductive Biology
  • Genomics and Phylogenetic Studies
  • Aquaculture disease management and microbiota
  • Fish Ecology and Management Studies
  • Plant pathogens and resistance mechanisms
  • Cancer-related molecular mechanisms research

Tianjin University of Technology
2023-2025

Wuhan Institute of Bioengineering
2025

Wuhan Polytechnic University
2018-2024

Kunming Institute of Botany
2014-2023

Chinese Academy of Sciences
2014-2023

Sichuan Agricultural University
2023

Shihezi University
2023

Nanjing Medical University
2020-2023

Hubei Academy of Agricultural Sciences
2023

Fudan University
2021-2023

BACKGROUND AND AIMS Mineral nutrient deficiencies and salinity constitute major limitations for crop plant growth on agricultural soils. 14-3-3 proteins are phosphoserine-binding that regulate the activities of a wide array targets via direct protein-protein interactions may play an important role in responses to mineral nutrients salt stress. In present study, expression profiling gene family response stress potassium iron young tomato (Solanum lycopersicum) roots was investigated order...

10.1093/aob/mcl189 article EN Annals of Botany 2006-08-30

Abstract Plant cis -elements play important roles in global regulation of gene expression. Based on microarray data from rice flag leaves during early senescence, we identified W-box and G-box as positive regulators senescence the variety Minghui 63. Both cis- elements were bound by leaf senescence-specific proteins vitro influenced vivo . Furthermore, combination two drove enhanced expression copy numbers significantly affected levels The is cognate element for WRKY proteins, while bZIP,...

10.1038/srep20881 article EN cc-by Scientific Reports 2016-02-11

Abstract Background Castor bean ( Ricinus communis L.) is an important oil crop, which belongs to the Euphorbiaceae family. The seed of castor currently only commercial source ricinoleic acid that can be used for producing about 2000 industrial products. However, it remains largely unknown regarding origin, domestication, and genetic basis key traits bean. Results Here we perform a de novo chromosome-level genome assembly wild progenitor By resequencing analyzing 505 worldwide accessions,...

10.1186/s13059-021-02333-y article EN cc-by Genome biology 2021-04-19

ABSTRACT Accurately predicting network traffic is crucial for dynamically deploying computing resources in data centers and reducing carbon emissions. In this paper, a hybrid prediction model Convolutional Neural Networks‐Long Short‐Term iTransformer (CNN‐LSTM‐iTransformer) based on CNN‐LSTM proposed. CNN—LSTM used to capture local features long—term dependencies, while employed feature relevance learning prediction. addition, the Huber Loss function further improve accuracy. experiment,...

10.1002/itl2.658 article EN Internet Technology Letters 2025-02-10

The AP2/ERF transcription factor, one of the largest gene families in plants, plays a crucial role regulation growth and development, metabolism, responses to biotic abiotic stresses. Castor bean (Ricinus communis L., Euphobiaceae) is most important non-edible oilseed crops its seed oil broadly used for industrial applications. available genome provides great chance identify characterize global information on factors castor bean, which might provide insights understanding molecular basis...

10.1186/1471-2164-14-785 article EN cc-by BMC Genomics 2013-11-13

Plant-specific GRAS transcription factors play important roles in regulating growth, development, and stress responses. Castor beans (Ricinus communis) are non-edible oilseed plants, cultivated worldwide for its seed oils adaptability to growth conditions. In this study, we identified characterized a total of 48 genes based on the castor bean genome. Combined with phylogenetic analysis, members were divided into 13 distinct groups. Functional divergence analysis revealed presence mostly...

10.3390/ijms17071004 article EN International Journal of Molecular Sciences 2016-06-24

Genomic imprinting often results in parent-of-origin specific differential expression of maternally and paternally inherited alleles. In plants, the triploid endosperm is where gene occurs most often, but aside from studies on Arabidopsis, little known about dicotyledons. this study, we inspected genomic castor bean (Ricinus communis) endosperm, which persists throughout seed development. After mapping out polymorphic SNP loci between accessions ZB306 ZB107, generated deep sequencing RNA...

10.1093/nar/gku375 article EN cc-by Nucleic Acids Research 2014-05-05

Abstract Mango (Mangifera indica L.) is a climacteric tropical fruit consumed around the world. Although ethylene and abscisic acid (ABA) have been considered to be stimulators that trigger mango ripening, their regulation mechanisms in modulating ripening remain uncertain. In this study, we performed integrative analyses of metabolome transcriptome data combined with series physiological experimental ‘Keitt’ mango, characterized changes accumulation specific metabolites at different stages...

10.1093/hr/uhac102 article EN cc-by Horticulture Research 2022-01-05

The entire world is facing a deteriorating environment. Understanding the mechanisms underlying plant responses to external abiotic stresses important for breeding stress-tolerant crops and herbages. Phytohormones play critical regulatory roles in plants response internal cues regulate growth development. Medicago falcata one of candidate leguminous species able fix atmospheric nitrogen. This ability allows grow nitrogen deficient soils.We performed Illumina sequencing cDNA prepared from...

10.1186/s12864-015-2019-x article EN cc-by BMC Genomics 2015-10-19

Panax ginseng C. A. Mey is one of famous medicinal herb plant species. Its major bioactive compounds are various ginsenosides in roots and rhizomes. It commonly accepted that synthesized from terpene precursors, IPP DMAPP, through the cytoplasmic mevalonate (MVA) pathway. Another plastic 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway was proved also contributing to ginsenoside generation P. by using specific chemical inhibitors recently. But their gene expression characteristics still...

10.1186/s12864-019-5718-x article EN cc-by BMC Genomics 2019-05-17

Soil salinity is a major source of abiotic plant stress, adversely affecting growth, development and productivity. Although the physiological molecular mechanisms that underlie responses to salt stress are becoming increasingly understood, epigenetic modifications, such as histone methylations their potential regulation transcription masked genes at genome level in response remain largely unclear. Castor bean, an important nonedible oil crop, has evolved capacity grow under stress. Here,...

10.1093/pcp/pcaa037 article EN Plant and Cell Physiology 2020-03-16

AimsLipoprotein-associated phospholipase A2 (lp-PLA2) has been detected in human and rabbit atherosclerotic lesions, where it co-localizes with its substrate, oxidized LDL (oxLDL). Here, we investigated whether oxLDL may exert a regulatory effect on lp-PLA2 expression.

10.1093/cvr/cvp367 article EN Cardiovascular Research 2009-11-12

Long non-coding RNAs (lncRNAs) serve as versatile regulators of plant growth and development. The potential functions inheritance patterns lncRNAs, well the epigenetic regulation lncRNA itself, remain largely uncharacterized in seeds, especially persistent endosperm dicotyledons. In this study, we investigated diverse RNA-seq data catalogued 5356 lncRNAs castor bean seeds. A small fraction were transcribed from same direction promoters protein-coding genes (PCgenes) exhibited strongly...

10.1111/tpj.13953 article EN The Plant Journal 2018-05-08

Investigations of genomic DNA methylation in seeds have been restricted to a few model plants. The endosperm hypomethylation has identified angiosperm, but it is difficult dissect the mechanism how this established and maintained because ephemeral disappears with seed development most dicots. Castor bean (Ricinus communis), unlike Arabidopsis (Arabidopsis thaliana), persistent throughout development, providing an excellent which We characterized methylation-related genes encoding...

10.1104/pp.16.00056 article EN PLANT PHYSIOLOGY 2016-04-28

Malania oleifera Chun et Lee (Olacaceae), an evergreen broad-leaved woody tree native to southwest China, is important oilseed tree. Its seed oil has a high level of nervonic acid (cis-tetracos-15-enoic acid, over 60%), which essential for human health. M. promising source but little known about the physiological and molecular mechanisms underlying its biosynthesis.In this study, we recorded accumulation at four stages development. Using high-throughput RNA-sequencing technique, obtained...

10.1186/s12870-018-1463-6 article EN cc-by BMC Plant Biology 2018-10-19

Amino acid transport via phloem is one of the major source-to-sink nitrogen translocation pathways in most plant species. permeases (AAPs) play essential roles amino between cells and subsequent or seed loading. In this study, a soybean AAP gene, annotated as GmAAP6a, was cloned demonstrated to be significantly induced by starvation. Histochemical staining GmAAP6a:GmAAP6a-GUS transgenic revealed that GmAAP6a predominantly expressed xylem parenchyma cells. Growth studies using toxic analogs...

10.1111/pbi.13338 article EN cc-by-nc Plant Biotechnology Journal 2020-01-16

B-cell maturation antigen (BCMA) is a highly plasma cell-selective protein expressed on malignant cells of patients with multiple myeloma (MM), and it defined therapeutic target. Major histocompatibility complex class I-related chain A (MICA) frequently in lymphoproliferative malignancies including MM. MICA activates natural killer (NK) costimulates T by interaction its immunoreceptor NK cell receptor G2D (NKG2D). Nonetheless, during full-blown MM, tumor promote efficient shedding, which...

10.1097/cji.0000000000000320 article EN Journal of Immunotherapy 2020-04-28

Domestication and improvement are important processes that generate the variation in genome phonotypes underlying crop improvement. Unfortunately, during selection for certain attributes, other valuable traits may be inadvertently discarded. One example is decline fruit soluble solids content (SSC) tomato breeding. Several genetic loci SSC have been identified, but few reports on mechanisms available. In this study we performed a genome-wide association (GWAS) of red-ripe fruits population...

10.1093/hr/uhad009 article EN cc-by Horticulture Research 2023-01-31

Abstract Protein-protein interactions (PPIs) are involved in almost all biological processes and form the basis of entire interactomics systems living organisms. Identification characterization these fundamental to elucidating molecular mechanisms signal transduction metabolic pathways at both cellular systemic levels. Although a number experimental computational studies have been performed on model organisms, exploring investigating PPIs tomatoes remain lacking. Here, we developed Predicted...

10.1038/srep25047 article EN cc-by Scientific Reports 2016-04-28
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