Philippe Clerc

ORCID: 0000-0003-1453-0865
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About
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Research Areas
  • Lichen and fungal ecology
  • Botany and Plant Ecology Studies
  • Mycorrhizal Fungi and Plant Interactions
  • Plant Pathogens and Fungal Diseases
  • Bryophyte Studies and Records
  • Genetic and Clinical Aspects of Sex Determination and Chromosomal Abnormalities
  • Escherichia coli research studies
  • Animal Genetics and Reproduction
  • CRISPR and Genetic Engineering
  • Genomics and Chromatin Dynamics
  • Viral gastroenteritis research and epidemiology
  • Yeasts and Rust Fungi Studies
  • Agriculture and Rural Development Research
  • Fern and Epiphyte Biology
  • Bacterial Genetics and Biotechnology
  • Bacteriophages and microbial interactions
  • Botany, Ecology, and Taxonomy Studies
  • Pluripotent Stem Cells Research
  • Legionella and Acanthamoeba research
  • Marine and environmental studies
  • Clostridium difficile and Clostridium perfringens research
  • Epigenetics and DNA Methylation
  • Materials Engineering and Processing
  • Mitochondrial Function and Pathology
  • ATP Synthase and ATPases Research

Conservatory and Botanical Garden of the City of Geneva
2015-2024

Institut Pasteur
1998-2019

Centre National de la Recherche Scientifique
1996-2019

Meise Botanic Garden
2015

University of Geneva
2012-2013

Inserm
1986-1992

Duke University
1991

Walter Reed Army Institute of Research
1987

Uniformed Services University of the Health Sciences
1987

University of Bern
1987

Virulent strains of Shigella flexneri invade HeLa cells with high efficiency. This crucial step in the pathogenic process is encoded by a 140-megadalton plasmid which induces phagocytosis bacteria host cells. In this report we used pWR100, virulence S. serotype 5, and pHS4108, 32-megadalton subclone to demonstrate that also responsible for rapid intracellular growth bacteria. The ability replicate intracellularly was not correlated induction Shiga toxin. However, plasmid-mediated...

10.1128/iai.51.2.461-469.1986 article EN Infection and Immunity 1986-02-01

The enteroinvasive bacterium Shigella flexneri expresses a plasmid-mediated capacity to penetrate into nonphagocytic cells. By using 7-nitrobenz-2-oxa-1,3-diazole-phallacidin (NBD-phallacidin), fluorescent dye which specifically stains microfilaments, we observed condensations of filamentous actin underneath the plasma membrane HeLa cells interacted with invasive isolate M90T. As demonstrated by indirect immunofluorescence antimyosin monoclonal antibody CC-212, myosin accumulated at same...

10.1128/iai.55.11.2681-2688.1987 article EN Infection and Immunity 1987-11-01
H. Thorsten Lumbsch Teuvo Ahtı Susanne Altermann Guillermo Amo de Paz André Aptroot and 95 more Ulf Arup Araceli Peña‐Álvarez Paulina A. Bawingan Michel Navarro Benatti Liliana Betancourt Curtis Björk Kansri Boonpragob Martin D. Brand Frank Bungartz Marcela E. S. Cáceres Mehmet Candan J. L. Chaves Philippe Clerc R. H. Common B. J. Coppins Ana Crespo Manuela Dal Forno Pradeep K. Divakar Melizar V. Duya John A. Elix Arve Elvebakk Johnathon D. Fankhauser Edit Farkas L. I. Ferraro E. Fischer D. J. Galloway Ester Gaya M. Giralt Trevor Goward Martín Grube Josef Hafellner Jose E. Hernandez Mari Lúcia Campos Klaus Kalb Ingvar Kärnefelt Gintaras Kantvilas Dorothee Killmann Paul M. Kirika Kerry Knudsen Harald Komposch S. Y. Kondratyuk James D. Lawrey Atílio J. Mangold Marcelo Pinto Marcelli Bruce McCune María Inés Messuti Andrea Michlig Ricardo Miranda‐González Bibiana Moncada Alivereti Naikatini Matthew P. Nelsen Dag Olav Øvstedal Zdeněk Palice Khwanruan Papong Sittiporn Parnmen Sergio Pérez‐Ortega Christian Printzen Víctor Rico Eimy Rivas Plata Javier Robayo Dania Rosabal Ulrike Ruprecht Nina S. Allen Leopoldo G. Sancho Luciana Santos De Jesus Thalita Vieira Matthias Schultz M. R. D. Seaward Emmanuël Sérusiaux Imke Schmitt Harrie J. M. Sipman Mohammad Sohrabi Ulrik Søchting Majbrit Zeuthen Søgaard L.B. Sparrius Albert Spielmann Toby Spribille JUTARAT SUTJARITTURAKAN Achra Thammathaworn Arne Thell Göran Thor Holger Thüs Einar Timdal Camille Truong Roman Türk LOENGRIN UMAñA TENORIO Pradeep K. Divakar Pieter van den Boom Mercedes Rebuelta Mats Wedin Susan Will‐Wolf Volkmar Wirth Nora Wirtz Rebecca Yahr Kumelachew Yeshitela

The number of undescribed species lichenized fungi has been estimated at roughly 10,000. Describing and cataloging these would take the existing taxonomists several decades; however, support for taxonomy is in decline worldwide. In this paper we emphasize dire need taxonomic expertise lichenology. We bring together 103 colleagues from institutions worldwide to describe a total 100 new fungi, representing wide geographic range. newly described are: Acarospora flavisparsa, A. janae,...

10.11646/phytotaxa.18.1.1 article EN Phytotaxa 2011-02-18

This is the first attempt to provide an overview of lichen diversity Alps, one biogegraphically most important and emblematic mountain systems worldwide. The checklist includes all lichenised species, plus a set non- or doubtfully taxa frequently treated by lichenologists, excluding non-lichenised lichenicolous fungi. Largely based on recent national regional checklists, it provides list infrageneric (with synonyms) hitherto reported from with data their distribution in eight countries...

10.3897/mycokeys.31.23568 article EN cc-by MycoKeys 2018-03-12

Summary We studied the evolutionary history of Parmeliaceae (Lecanoromycetes, Ascomycota), one largest families lichen‐forming fungi with complex and variable morphologies, also including several lichenicolous fungi. assembled a six‐locus data set nuclear, mitochondrial low‐copy protein‐coding genes from 293 operational taxonomic units ( OTU s). The lifestyle originated independently three times in lichenized ancestors within Parmeliaceae, new generic name is introduced for these In all...

10.1111/nph.13553 article EN publisher-specific-oa New Phytologist 2015-08-24

Transcription factor networks, together with histone modifications and signalling pathways, underlie the establishment maintenance of gene regulatory architectures associated molecular identity each cell type. However, how master transcription factors individually impact epigenomic landscape orchestrate behaviour networks under different environmental constraints is only partially understood. Here, we show that Nanog deploys multiple distinct mechanisms to enhance embryonic stem...

10.1038/s41467-019-09041-z article EN cc-by Nature Communications 2019-03-07

In Shigella flexneri a 220-kilobase plasmid encodes the ability to invade nonprofessional phagocytes by mechanism similar phagocytosis. this report, continuous macrophage cell line J774 was used study intracellular fate of both invasive and noninvasive strains. pWR100, virulence S. serotype 5, mediated very efficient rapid killing macrophages, as measured cellular detachment uptake trypan blue. For occur, bacteria had be within cells, since macrophages were protected cytochalasin D. A...

10.1128/iai.55.3.521-527.1987 article EN Infection and Immunity 1987-03-01

SUMMARY: We have previously cloned a 44 kb fragment from the virulence plasmid of Shigella flexneri serotype 5 strain M90T which is capable restoring invasiveness to an avirulent, plasmidless mutant. This report presents genetic and physical analysis Tn5 mutations in recombinant clone pHS4108. mutagenesis allowed identification at least five regions implicated entry phenotype. These were located on 20 portion Expression insertion mutants was studied by immunoblots using serum convalescent...

10.1099/00221287-133-12-3403 article EN Microbiology 1987-12-01
Juan Carlos Zamora Måns Svensson Roland Kirschner Ibai Olariaga Svengunnar Ryman and 95 more Luis A. Parra József Geml Anna Rosling Slavomír Adamčík Teuvo Ahtı M. Catherine Aime A. Martyn Ainsworth László Albert Edgardo Albertó A. Altés Dmitry Ageev Reinhard Agerer Begoña Aguirre-Hudson Joe Ammirati Harry Andersson Claudio Angelini Vladimír Antonín Takayuki Aoki André Aptroot Didier Argaud Blanca Imelda Arguello Sosa A. Aronsen Ulf Arup Bita Asgari Boris Assyov Violeta Atienza Ditte Bandini J. L. Baptista-Ferreira Hans-Otto Baral Tim Baroni Robert W. Barreto Henry J. Beker A.R. Bell Jean‐Michel Bellanger Francesco Bellù Martin Bemmann Mika Bendiksby Egil Bendiksen Katriina Bendiksen Lajos Benedek Anna Bérešová-Guttová Franz Berger Reinhard Berndt Annarosa Bernicchia Alona Yu. Biketova Enrico Bizio Curtis R. Björk Teun Boekhout David Boertmann Tanja Böhning Florent Boittin Carlos G. Boluda Menno W. Boomsluiter Jan Borovička Tor Erik Brandrud Uwe Braun Irwin M. Brodo Tatiana Bulyonkova Harold H. Burdsall Bart Buyck Ana Rosa Burgaz Vicent Calatayud Philippe Callac Emanuele Campo Massimo Candusso B Capoen Joaquim Carbó Matteo Carbone Rafael F. Castañeda-Ruíz Michael A. Castellano Jie Chen Philippe Clerc Giovanni Consiglio Gilles Corriol Régis Courtecuisse Ana Crespo Cathy L. Cripps P.W. Crous Gladstone Alves da Silva Meiriele da Silva Marjo Dam Nico Dam Frank Dämmrich Kanad Das Linda Davies Eske De Crop André De Kesel R. D. Lange Bárbara De Madrignac Bonzi Thomas Edison E. dela Cruz Lynn Delgat V. Demoulin Dennis E. Desjardin Paul Diederich Bálint Dima

Nomenclatural type definitions are one of the most important concepts in biological nomenclature. Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificial agreement to classify diversity) with nomenclature name diversity). Two proposals amend International Code Nomenclature for algae, fungi, and plants (ICN), allowing DNA sequences alone (of any region extent) serve as taxon names voucherless fungi (mainly putative taxa from...

10.5598/imafungus.2018.09.01.10 article EN cc-by IMA Fungus 2018-05-24

A counting process senses the X chromosome/autosome ratio and ensures that chromosome inactivation (XCI) initiates in early female (XX) embryo differentiating ES cells but not their male (XY) counterparts. Counting depends on center (Xic), which contains Xist gene encoding a nuclear RNA, coats inactive induces silencing. 37-kb sequence lying 3' to is known prevent initiation of XCI cells. This region major minor promoters Tsix gene, runs antisense Xist, DXPas34 tandem repeat close promoter....

10.1073/pnas.0602381103 article EN Proceedings of the National Academy of Sciences 2006-04-29

Systematics and taxonomy of Usnea cornuta, U. flammea fragilescens are discussed. The morphology, chemistry distribution these species in Europe described a first attempt is made to provide key for the erect‐bushy subpendant sorediate Scandinavia. Compounds reported this aggregate include lobaric acid (new genus). new constrictula, inflate, intexla subpectinata reduced synonymy with dalmatica rupestris flammea, glaucescens hirta combination var. mollis proposed.

10.1111/j.1756-1051.1987.tb00969.x article EN Nordic Journal of Botany 1987-09-01

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10.1006/lich.1999.0250 article EN The Lichenologist 2000-03-01

Abstract Practically most of the taxonomists working on vascular plants and fungi are using so-called taxonomic species concept, relying largely morphological criteria or other observable patterns discontinuity assuming that these reflecting underlying genetic integrity species. Such a concept is described in detail here for genus Usnea . The typologicalview versus populational view discussed. diagnostic value characters used by previous recent analysed. fact has such bad reputation use J....

10.1006/lich.1998.0150 article EN The Lichenologist 1998-07-01

X chromosome inactivation in both mouse and human requires the presence of a cis acting locus, centre. This locus is thought to be involved initiation spreading signal early development. In order increase our understanding centre, 94 kb region immediately distal Xist gene has been sequenced analysed for transcription units and/or potential regulatory elements. We have identified novel gene, Tsx, lying 40 3′ from Xist. Tsx expressed specifically testis shows no convincing homology proteins...

10.1093/hmg/5.11.1713 article EN Human Molecular Genetics 1996-11-01

Usnea species with a red-orange cortical or subcortical pigmentation were studied in the tropical Andes (Venezuela, Colombia, Ecuador, Peru and Bolivia) Galapagos Islands. Sixteen are treated, 14 occurring six Galapagos. crocata, U. grandisora (endemic to Galapagos), rubricornuta subdasaea newly described. dorogawensis, michauxii, subcornuta subrubicunda new South America. Tri-terpenoids detected by thin layer chromatography play an important role taxonomy of this group species. Several...

10.1639/0007-2745-114.3.477 article EN The Bryologist 2011-09-01
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