A5078777969- Plant Molecular Biology Research
- Genomics and Phylogenetic Studies
- Plant Reproductive Biology
- Plant Gene Expression Analysis
- Plant biochemistry and biosynthesis
- Photosynthetic Processes and Mechanisms
- Chromosomal and Genetic Variations
- Plant Diversity and Evolution
- Plant Pathogenic Bacteria Studies
- Streptococcal Infections and Treatments
- Plant and animal studies
- Plant Stress Responses and Tolerance
- Plant tissue culture and regeneration
- Plant and Fungal Species Descriptions
- Plant-Microbe Interactions and Immunity
- Plant Virus Research Studies
- Legume Nitrogen Fixing Symbiosis
- Banana Cultivation and Research
- Plant Taxonomy and Phylogenetics
- Polysaccharides and Plant Cell Walls
- Plant and Fungal Interactions Research
- Plant Pathogens and Fungal Diseases
- Light effects on plants
- Plant nutrient uptake and metabolism
- Genetic diversity and population structure
Zhejiang University
2020-2025
Zhejiang A & F University
2016-2025
Huazhong Agricultural University
2015-2025
Zhengzhou University of Industrial Technology
2024
Yunnan Agricultural University
2015-2024
Hebei Agricultural University
2024
Fujian Agriculture and Forestry University
2015-2023
Sanya University
2022-2023
Wan Fang Hospital
2019
Genomics (United Kingdom)
2017-2018
The biological interpretation of gene lists with interesting shared properties, such as up- or down-regulation in a particular experiment, is typically accomplished using ontology enrichment analysis tools. Given list genes, (GO) may return hundreds statistically significant GO results "flat" list, which can be challenging to summarize. It also difficult keep pace rapidly expanding knowledge, often daily changes any the over 47,000 ontologies that describe knowledge. GOATOOLS, Python-based...
High oil and protein content make tetraploid peanut a leading food legume. Here we report high-quality genome sequence, comprising 2.54 Gb with 20 pseudomolecules 83,709 protein-coding gene models. We characterize functional groups implicated in seed size evolution, content, disease resistance symbiotic nitrogen fixation. The B subgenome has more genes general expression dominance, temporally associated long-terminal-repeat expansion the A that also raises questions about A-genome...
The WRKY gene family in flowering plants encodes a large group of transcription factors (TFs) that play essential roles diverse stress responses, developmental, and physiological processes. In this review, we provided comprehensive screenshot about the studies on TFs model crops economical relevance. Specifically, discussed history discovery functional characterization, classification, evolutionary history, 3D structure functions factors. Based previous genes such as Arabidopsis rice,...
Abstract Water lilies belong to the angiosperm order Nymphaeales. Amborellales, Nymphaeales and Austrobaileyales together form so-called ANA-grade of angiosperms, which are extant representatives lineages that diverged earliest from lineage leading mesangiosperms 1–3 . Here we report 409-megabase genome sequence blue-petal water lily ( Nymphaea colorata ). Our phylogenomic analyses support Amborellales as successive sister all other angiosperms. The N. 19 transcriptomes reveal a Nymphaealean...
Orchids make up about 10% of all seed plant species, have great economical value, and are specific scientific interest because their renowned flowers ecological adaptations. Here, we report the first draft genome sequence a lithophytic orchid, Dendrobium catenatum. We predict 28,910 protein-coding genes, find evidence whole duplication shared with Phalaenopsis. observed expansion many resistance-related suggesting powerful immune system responsible for adaptation to wide range niches. also...
As of today, the intermediate host 2019-nCoV has not been determined Considering that hosts are generally mammals [5], they likely living sold in South China seafood market Therefore, strengthening monitoring wild is an urgent measure to prevent similar viruses from infecting humans future More than 1,000 confirmed cases have reported The number provinces and cities as well other Downloaded https://academic oup com/cid/advance-article-abstract/doi/10 1093/cid/ciaa112/5721420 by World Health...
Cycads represent one of the most ancient lineages living seed plants. Identifying genomic features uniquely shared by cycads and other extant plants, but not non-seed-producing may shed light on origin key innovations, as well early diversification Here, we report 10.5-Gb reference genome Cycas panzhihuaensis, complemented transcriptomes 339 cycad species. Nuclear plastid phylogenomic analyses strongly suggest that Ginkgo form a clade sister to all gymnosperms, in contrast mitochondrial...
R2R3-MYB genes (R2R3-MYBs) form one of the largest transcription factor gene families in plant kingdom, with substantial structural and functional diversity. However, evolutionary processes leading to this amazing diversity have not yet been clearly established. Recently developed genomic classical molecular technologies provided detailed insights into relationships functions R2R3-MYBs. Here, we review recent genome-level analyses R2R3-MYBs, an emphasis on their evolution diversification. In...
Lilies are economically important monocots known for their ornamental flowers, bulbs, and large genomes. The absence of genomic information has impeded evolutionary studies genome-based breeding efforts. Here, we present reference genomes Lilium sargentiae (lily, 35.66 Gb) Gloriosa superba (flame lily, 5.09 Gb). giant lily genome is shaped by recent long terminal repeat retroelements. Phylogenetic analysis reveals diverse, independent origins cultivars. Gene families involved in sucrose...
Mitochondrial genomes of flowering plants (angiosperms) are highly dynamic in genome structure. The mitogenome the earliest angiosperm Amborella is remarkable carrying rampant foreign DNAs, contrast to Liriodendron, other only known early that described as 'fossilized'. distinctive features observed two plant mitogenomes add current confusions what look like. Expanded sampling would provide more details understanding mitogenomic evolution angiosperms. Here we report complete mitochondrial...
Abstract Background Pecan (Carya illinoinensis) and Chinese hickory (C. cathayensis) are important commercially cultivated nut trees in the genus Carya (Juglandaceae), with high nutritional value substantial health benefits. Results We obtained >187.22 178.87 gigabases of sequence, ~288× 248× genome coverage, to a pecan cultivar (“Pawnee”) domesticated landrace (ZAFU-1), respectively. The total assembly size is 651.31 megabases (Mb) for 706.43 Mb hickory. Two duplication events before...
Rapeseed (Brassica napus L.) is a recent allotetraploid crop, which well known for its high oil production. Here, we report high-quality genome assembly of typical semi-winter rapeseed cultivar, 'Zhongshuang11' (hereafter 'ZS11'), using combination single-molecule sequencing and chromosome conformation capture (Hi-C) techniques. Most the high-confidence sequences (93.1%) were anchored to individual chromosomes with total 19 centromeres identified, matching exact count B. napus. The repeat in...
Abstract Rosa rugosa , commonly known as rugged rose, is a perennial ornamental shrub. It produces beautiful flowers with mild fragrance and colorful seed pods. Unlike many other cultivated roses, R. adapts to wide range of habitat types harsh environmental conditions such salinity, alkaline, shade, drought, high humidity, frigid temperatures. Here, we produced analyzed high-quality genome sequence for understand its ecology, floral characteristics evolution. PacBio HiFi reads were initially...
Summary Azalea belongs to Rhododendron , which is one of the largest genera flowering plants and well known for diversity beauty in its more than 1000 woody species. contains two distinct groups: most high‐altitude a few low‐altitude species; however, former group difficult be domesticated urban landscaping, their evolution adaptation are little known. ovatum has broad regions but possesses evergreen characteristics like species, it floral fragrance that deficient cultivars. Here we report...
Abstract Cultivated chrysanthemum (Chrysanthemum × morifolium Ramat.) is a beloved ornamental crop due to the diverse capitula types among varieties, but molecular mechanism of capitulum development remains unclear. Here, we report 2.60 Gb chromosome-scale reference genome C. lavandulifolium, wild Chrysanthemum species found in China, Korea and Japan. The evolutionary analysis revealed that only recent tandem duplications occurred lavandulifolium after shared whole triplication (WGT)...
Abstract Understanding the genetic basis of rubber tree ( Hevea brasiliensis ) domestication is crucial for further improving natural production to meet its increasing demand worldwide. Here we provide a high-quality H. genome assembly (1.58 Gb, contig N50 11.21 megabases), present map variations by resequencing 335 accessions and reveal domestication-related molecular signals major trait, higher number laticifer rings. We show that HbPSK5 , encoding small-peptide hormone phytosulfokine...
Floral color and scent are crucial for plant-environment interactions, especially in reproduction by attracting pollinators fertilization. They also have wide applications cosmetic, pharmaceutical, nutraceutical industries. Plant pigments typically classified as chlorophylls, flavonoids, carotenoids, betalains, while volatile organic compounds (VOCs) grouped terpenes, phenylpropanoids/benzenoids, fatty acid derivatives. Significant progresses been made understanding the biosynthesis...
In south China the Lushan massif forms a topographic high of South Block Qinling‐Dabie belt. The consists two main lithotectonic units separated by major tectonic contact: Neoproterozoic (upper Sinian)‐Paleozoic unit comprising primarily unmetamorphosed sandstones overlies Paleoproterozoic mainly composed low‐pressure, high‐temperature gneisses and micaschists. Both are cut Cretaceous granitic intrusions. Three primary tectono‐metamorphic magmatic events recognized. eastern part is NNE‐SSW...
Maca (Lepidium meyenii Walp, 2n = 8x 64), belonging to the Brassicaceae family, is an economic plant cultivated in central Andes sierra Peru (4000-4500 m). Considering that rapid uplift of occurred 5-10 million years ago (Ma), evolutionary question arises regarding how plants such as maca acquire high-altitude adaptation within a short geological period. Here, we report high-quality genome assembly maca, which two closely spaced maca-specific whole-genome duplications (WGDs; ∼6.7 Ma) were...
The identification of conserved syntenic regions enables discovery predicted locations for orthologous and homeologous genes, even when no such gene is present. This capability means that synteny-based methods are far more effective than sequence similarity-based in identifying true-negatives, a necessity studying loss transposition. However, the requires complex analyses which must be repeated pairwise comparisons between any two species. Therefore, as number published genomes increases,...
Eucommia ulmoides, also called hardy rubber tree, is an economically important tree; however, the lack of its genome sequence restricts fundamental biological research and applied studies this plant species. Here, we present a high-quality assembly ∼1.2-Gb (scaffold N50 = 1.88 Mb) with at least 26 723 predicted genes for E. first sequenced order Garryales, which was obtained using integrated strategy combining Illumina sequencing, PacBio BioNano mapping. As sister taxon to lamiids...