A5103139613- Genetic diversity and population structure
- Genomics and Phylogenetic Studies
- Identification and Quantification in Food
- Fish Ecology and Management Studies
- Genetic and phenotypic traits in livestock
- Molecular Biology Techniques and Applications
- Phytochemistry and Biological Activities
- Aquaculture disease management and microbiota
- Natural product bioactivities and synthesis
- Ecology and Conservation Studies
- Cancer-related molecular mechanisms research
- Plant Pathogens and Fungal Diseases
- Wildlife Ecology and Conservation
- Plant and animal studies
- Plant-based Medicinal Research
- Botanical Studies and Applications
- Food Quality and Safety Studies
- Berberine and alkaloids research
- Environmental DNA in Biodiversity Studies
- Aquaculture Nutrition and Growth
- Phytochemicals and Antioxidant Activities
- Genetic Mapping and Diversity in Plants and Animals
- Bat Biology and Ecology Studies
- Physiological and biochemical adaptations
- Medicinal plant effects and applications
National Institute of Biological Resources
2013-2024
National Institute of Environmental Research
2012
Hokkaido University
2011
Microsatellites, a special class of repetitive DNA sequence, have become one the most popular genetic markers for population/conservation studies. However, its application to endangered species has been impeded by high development costs, lack available sequences, and technical difficulties. The water deer Hydropotes inermis is sole existing subfamily Capreolinae. Although population genetics studies are urgently required conservation management, no species-specific microsatellite marker...
Human-driven habitat fragmentation leads to spatial isolation of endangered plant species increasing extinction risk. Understanding genetic variability and population structure rare isolated is great importance for assessing risk setting up conservation plans. Aconitum austrokoreense, an endemic in Korea, a perennial herb commonly used medicinal purposes. We five nuclear microsatellites one chloroplast marker investigate diversity 479 individuals A. austrokoreense from seven populations...
Salix chaenomeloides Kimura, commonly known as pussy willow, is a deciduous shrub and tree belonging to the Salicaceae family. The genus spp. has been healing herb for treatment of fever, inflammation, pain relief. current study aimed investigate potential bioactive natural products from S. leaves evaluate their antibacterial activity against Helicobacter pylori. A phytochemical investigation ethanol (EtOH) extract led isolation 13 phenolic compounds (1–13) ethyl acetate (EtOAc) fraction,...
Ranunculus sceleratus (family: Ranunculaceae) is a medicinally and economically important plant; however, gaps in taxonomic species identification limit its practical applicability. This study aimed to sequence the chloroplast genome of R. from Republic Korea. Chloroplast sequences were compared analyzed among species. The was assembled Illumina HiSeq 2500 sequencing raw data. 156,329 bp had typical quadripartite structure comprising small single-copy region, large two inverted repeats....
The spotted sleeper, Odontobutis interrupta, is a fish species endemic to Korea and shows potential as an aquaculture species. Nevertheless, the population size of this has declined significantly in recent years. To characterize structure genetic diversity O. interrupta Korea, we analyzed four microsatellite loci twelve populations from major river systems. provenance was investigated discern origin translocated populations. ranged 0.440 0.756, showing high level similar that other...
The red fox (Vulpes vulpes) is the most widely distributed terrestrial carnivore in world, occurring throughout of North America, Europe, Asia, and Africa. In South Korea, however, this species has been drastically reduced due to habitat loss poaching. Consequently, it classified as an endangered Korea. As a first step planned restoration project, preserved museum specimens were used determine genetic status foxes that had previously inhabited Korea against from neighboring countries. Total...
This study is the first report to characterize
The complete mitochondrial genome sequence of Vulpes vulpes consists 13 protein-coding genes, 22 tRNA 2 rRNA and 1 control region (CR). CR is located between the tRNA-Pro tRNA-Phe genes 1173 base pairs (bp) in length. It a short non-repetitive followed by 8-bp 5′-ACACACGT-3′ tandem repeat conserved black I II.
Here, we report the information about molecular and expression characterization of NR1 gene in chum salmon for first time. The complete subunit showed a large open-reading frame 2844 bp total length 3193 bp, this cDNA contained coding region encoding 948 amino acids stop codon. organization were similar most other fishes, except C' terminal. was to show higher natal river near hatchery than coast. We expect that reported herein may facilitate further investigations on relationship between...
This study is the first to report characterization of Carex pumila genomic information. Assembly genome generated a draft C. based on PacBio Sequel II and Illumina paired-end sequencing, which was assembled from 2941 contigs with an estimated size 0.346 Gb. The estimate repeats in 31.0%, heterozygosity ranged 0.426 0.441%. integrity evaluation assembly revealed 1481 complete benchmarked universal single-copy orthologs (BUSCO) (91.76%), indicating high quality assembly. A total 23,402...
We used next-generation sequencing to develop 9 novel microsatellite markers in Aconitum austrokoreense, an endemic and endangered medicinal plant Korea.Owing its very limited distribution, over-harvesting for traditional purposes, habitat loss, the natural populations are dramatically declining Korea.All were successfully genotyped using 64 samples from two (Mt.Choejeong, Gyeongsangbukdo Ungseokbong, Gyeongsangnam-do) of Gyeongsang Province.The number alleles ranged 2 7 per locus each...
The complete mitogenome of the Korean hare (Lepus coreanus) was determined by long and accurate polymerase chain reaction primer-walking methods. is 17,472 bp in length contains sequences that encode 13 protein genes, 22 tRNAs, 2 rRNAs a noncoding control region. arranged an identical order to found most other vertebrates. All mitochondrial genes are encoded on heavy strand, except for eight tRNA ND6 gene. region putative termination associated elements, conserved sequence blocks short...
L. (Equisetaceae), widely known as 'horsetail', is a perennial plant found extensively across Asia. Extracts of
The Kumgang fat minnow (Rhynchocypris kumgangensis) is an endemic and critically endangered freshwater species in the Korean peninsula. Its genome 16604 bp long consists of 13 protein-coding genes, 2 rRNA 22 tRNA a control region (CR). gene order composition R. kumgangensis was similar to that most other vertebrates. base H-strand descending A (27.75%), C (27.58%), T (26.31%), G (18.36%), with AT content 54.06%. Three overlapping regions among genes were found (i.e. ATP8/ATP6, ND4L/ND4,...
The mtDNA sequence of Pungtungia herzi in Korea comprises 16,599 nt and contains 37 genes (13 protein-coding genes, 2 rRNAs 22 tRNAs). content the arrangement genome Korean specimen were identical to that previously reported for a Japanese specimen, with 98.3% genetic similarity between two complete mitogenomes. pairwise distances three mitogenomes obtained among Pseudopongtungia nigra. tenuicorpa, nigra tenuicorpa 9.26%, 12.88% 12.75%, respectively.
Here, we report the complete mitogenome of Myotis frater with GenBank accession number MH177276 as a first step to elucidate genetic characteristics this species. Its was 17,089 bp long and consisted 13 protein-coding genes (PCGs), two rRNA genes, 22 tRNA control region. The gene order composition M. similar that most other vertebrates. base PCG in descending A (33.8%), C (22.7%), T (30.4%), G (13.1%), an AT content 64.2%. Four overlapping regions ATP8/ATP6, ATP6/COX3, ND4L/ND4, ND5/ND6,...
The complete mitochondrial genome of Hymeniacidon sinapium (Demospongiae, Halichondriidae) is reported here for the first time. H. mitogenome 23,435 base pairs in total length and includes 14 protein-coding gene sequences, small large rRNA 25 tRNA sequences. All genes are encoded on heavy strand without overlapping genes.