A5003594297- Plant Gene Expression Analysis
- Plant Molecular Biology Research
- Scientific Computing and Data Management
- Genetics, Bioinformatics, and Biomedical Research
- Bioenergy crop production and management
- Polysaccharides and Plant Cell Walls
- Genomics and Phylogenetic Studies
- Tree Root and Stability Studies
- Plant Water Relations and Carbon Dynamics
- Biofuel production and bioconversion
- Fermentation and Sensory Analysis
- Research Data Management Practices
- Plant tissue culture and regeneration
- Genetic Mapping and Diversity in Plants and Animals
- Plant responses to water stress
- Plant and Fungal Interactions Research
- Wheat and Barley Genetics and Pathology
- Advanced Data Storage Technologies
- Cell Image Analysis Techniques
- Gut microbiota and health
- Data Visualization and Analytics
- Genetic and phenotypic traits in livestock
- Photosynthetic Processes and Mechanisms
- Spectroscopy and Quantum Chemical Studies
- Biomedical Text Mining and Ontologies
Université Clermont Auvergne
2018-2024
Institut Français de Bioinformatique
2024
Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement
2024
RIKEN Center for Sustainable Resource Science
2011-2013
Université Toulouse III - Paul Sabatier
2012-2013
Université de Toulouse
2013
Physique et Physiologie Intégratives de l'Arbre en Environnement Fluctuant
2012-2013
Centre National de la Recherche Scientifique
2011-2013
Universität Hamburg
2012
Institut für Holztechnologie Dresden
2012
Abstract We previously showed that the VASCULAR-RELATED NAC-DOMAIN6 (VND6) and VND7 genes, which encode NAM/ATAF/CUC domain protein transcription factors, act as key regulators of xylem vessel differentiation. Here, we report a glucocorticoid-mediated posttranslational induction system VND6 VND7. In this system, or is expressed fused with activation herpes virus VP16 hormone-binding animal glucocorticoid receptor, protein's activity induced by treatment dexamethasone (DEX), derivative. Upon...
Abstract Galaxy (https://galaxyproject.org) is deployed globally, predominantly through free-to-use services, supporting user-driven research that broadens in scope each year. Users are attracted to public services by platform stability, tool and reference dataset diversity, training, support integration, which enables complex, reproducible, shareable data analysis. Applying the principles of user experience design (UXD), has driven improvements accessibility, discoverability...
There is an ongoing explosion of scientific datasets being generated, brought on by recent technological advances in many areas the natural sciences. As a result, life sciences have become increasingly computational nature, and bioinformatics has taken central role research studies. However, basic skills, data analysis, stewardship are still rarely taught science educational programs, resulting skills gap researchers tasked with analysing these big datasets. In order to address this empower...
Summary Wood harvested from trees is one of the most widely utilized natural materials on our planet. Recent environmental issues have prompted an increase in demand for wood, especially as a cost‐effective and renewable resource industry energy, so it important to understand process wood formation. In present study, we focused poplar ( Populus trichocarpa ) NAC domain protein genes which are homologous well‐known Arabidopsis transcription factors regulating differentiation xylem vessels...
The presence of lignin in secondary cell walls (SCW) is a major factor preventing hydrolytic enzymes from gaining access to cellulose, thereby limiting the saccharification potential plant biomass. To understand how lignification regulated prerequisite for selecting biomass better adapted bioethanol production. Because transcriptional regulation mechanism controlling expression genes involved biosynthesis, our aim was identify novel transcription factors dictating profiles model Arabidopsis....
Xylem vessel elements play an important role in conducting water and nutrient land plants. The vitro culture system, which subcultured Arabidopsis cells are induced to transdifferentiate into xylem elements, was used uncover the comprehensive gene expression profile by microarray analysis, resulted identification of many genes encoding transcription factors including two transcriptional key regulators, VASCUAR-RELATED NAC DOMAIN6 (VND6) VND7. Here we analyze detailed pattern function ten MYB...
• The vascular cambium is the meristem in trees that produce wood. This consists of two types neighbouring initials: fusiform cambial cells (FCCs), which give rise to axial cell system (i.e. fibres and vessel elements), ray (RCCs), rays. There little molecular information on mechanisms whereby differing characteristics these are maintained. A microgenomic approach was adopted transcriptomes FCCs RCCs dissected out from poplar (Populus trichocarpa×Populus deltoïdes var. Boelare) were...
Deciphering the genetic determinants involved in cell wall assembly is a strategic issue for breeding programs that target both ruminant feeding and biofuel production. The Arabidopsis thaliana model system has great potentials to elucidate component biosynthesis those regulation cascades allowing their coordinated assembly. QTL biomass quality related traits (cell content, lignin degradability) were mapped three RIL progenies Bay0 × Shahdara, Bur0 Col0, Blh1 Col0. Overall, 40 detected these...
<ja:p>Vascular cambium is the lateral meristem producing xylem cells inwards and phloem outwards in plant stem. Thus, trees, quality quantity of wood a result highly regulated developmental process depending initially on vascular cell production. The availability accurate transcriptomics technologies based high coverage sequencing raises level expectations tissue sampling to very degree. What benefit top-level formation studies if we are using these raw tissues, mixing at organ or even...
Project 6 during the 2023 BioHackathon Europe in Barcelona focused on "Enhancing image analysis community Galaxy." Despite Galaxy's strong presence genomics and proteomics, its tools workflows are currently scattered. This project aimed to gather efforts across fields build a robust interdisciplinary community.
Abstract There is an ongoing explosion of scientific datasets being generated, brought on by recent technological advances in many areas the natural sciences. As a result, life sciences have become increasingly computational nature, and bioinformatics has taken central role research studies. However, basic skills, data analysis stewardship are still rarely taught science educational programs [1], resulting skills gap researchers tasked with analysing these big datasets. In order to address...