Jie Sun

ORCID: 0009-0004-2482-7296
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About
Contact & Profiles
Research Areas
  • Genomics and Phylogenetic Studies
  • Chromosomal and Genetic Variations
  • Plant Molecular Biology Research
  • Horticultural and Viticultural Research
  • Plant Pathogens and Fungal Diseases
  • Plant tissue culture and regeneration
  • Plant Disease Resistance and Genetics
  • Telomeres, Telomerase, and Senescence
  • Fermentation and Sensory Analysis
  • Nuts composition and effects
  • Plant Genetic and Mutation Studies
  • Genetic and Environmental Crop Studies
  • Carbohydrate Chemistry and Synthesis
  • Streptococcal Infections and Treatments
  • RNA and protein synthesis mechanisms
  • Wheat and Barley Genetics and Pathology
  • Herpesvirus Infections and Treatments
  • Yeasts and Rust Fungi Studies
  • Enzyme Structure and Function

Shenzhen Academy of Inspection and Quarantine
2025

Shandong Academy of Agricultural Sciences
2023-2024

Peking University
2024

Chili pepper (Capsicum) is known for its unique fruit pungency due to the presence of capsaicinoids. The evolutionary history capsaicinoid biosynthesis and mechanism their tissue specificity remain obscure lack high-quality Capsicum genomes. Here, we report two telomere-to-telomere (T2T) gap-free genomes C. annuum wild nonpungent relative rhomboideum investigate evolution in chili peppers. We precisely delineate centromeres, which high-copy tandem repeats but are extensively invaded by CRM...

10.1038/s41467-024-48643-0 article EN cc-by Nature Communications 2024-05-20

Grapevine (Vitis) is the oldest domesticated fruit crop with great cultural and economic importance. Here, we assemble annotate haplotype-resolved genomes of 72 Vitis accessions including 25 wild 47 cultivated grapevines, a complete genome V. vinifera. Coalescent phylogenomics 142 haplotype disentangles mysterious hybridization history revealing enormous genetic diversity among species. Pangenome analysis together phenotyping data reveals that European cultivars, more susceptible to most...

10.1101/2024.02.28.582440 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2024-03-02

Lettuce (Lactuca sativa L.) is an annual plant of the Asteraceae family, commonly used as a fresh-cut vegetable and primary ingredient in salads. It rich vitamins, minerals, polyphenols, carotenoids, providing numerous health benefits. In 2021, lettuce achieved gross production value $16.6 billion worldwide, with China, United States, Western Europe leading producers (Food Agriculture, 2023Food AgricultureOrganization Nations. FAOSTAT, Rome2023Google Scholar). Most cultivated varieties are...

10.1016/j.xplc.2024.101011 article EN cc-by-nc-nd Plant Communications 2024-06-27

Fusarium oxysporum is an asexual filamentous fungus that causes vascular wilt in hundreds of crop plants and poses a threat to public health through Fusariosis. F. f. sp. conglutinans strain Fo5176, originally isolated from Brassica oleracea, pathogenic Arabidopsis, making it model pathosystem for dissecting the molecular mechanisms underlying host-pathogen interactions. Assembling genome notoriously challenging due presence repeat-rich accessory chromosomes. Here, we report gap-free...

10.1038/s41597-024-03763-6 article EN cc-by-nc-nd Scientific Data 2024-08-27

<title>Abstract</title> <italic>Nicotiana benthamiana</italic> is a model organism widely adopted in plant biology and biotechnology. Its genomic research has lagged since its initial release 2012. To further improve usefulness, we generate phase the complete 2.85 Gb genome assembly of allotetraploid <italic>N. with all 19 centromeres 38 telomeres fully resolved. We find that although <italic>Solanaceae</italic>centromeres are dominated by Ty3/Gypsy retrotransposons, satellite-based...

10.21203/rs.3.rs-4568898/v1 preprint EN cc-by Research Square (Research Square) 2024-08-02

Abstract Einkorn wheat ( Triticum monococcum ) is one of the oldest cereal crops to be domesticated by human beings, playing essential role in early agriculture development. Today, it considered an important genomic resource for modern improvement, especially resistance against pests and diseases. However, exploration utilization useful genes from T. limited due lack a reference genome annotation this species. Here, we report near-complete assembly with total length 5.11 Gb contig N50...

10.1101/2023.05.07.539731 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2023-05-09
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