Rui Xie

ORCID: 0000-0002-6609-5220
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About
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Research Areas
  • Mycotoxins in Agriculture and Food
  • Fungal and yeast genetics research
  • Plant Gene Expression Analysis
  • Bacteriophages and microbial interactions
  • Plant Pathogens and Fungal Diseases
  • Plant-Microbe Interactions and Immunity
  • Plant Disease Resistance and Genetics
  • Plant Molecular Biology Research
  • Plant Pathogenic Bacteria Studies
  • Viral gastroenteritis research and epidemiology
  • Microbial Natural Products and Biosynthesis
  • Genomics and Phylogenetic Studies
  • Nematode management and characterization studies
  • Fungal Biology and Applications
  • Microbial infections and disease research
  • Entomopathogenic Microorganisms in Pest Control
  • Plant Stress Responses and Tolerance
  • Botanical Studies and Applications
  • Antimicrobial Peptides and Activities
  • Plant Pathogens and Resistance
  • Infections and bacterial resistance
  • Fungal Plant Pathogen Control
  • Escherichia coli research studies
  • Antimicrobial agents and applications
  • Epigenetics and DNA Methylation

Inner Mongolia Academy of Agricultural & Animal Husbandry Sciences
2019-2025

Anhui Agricultural University
2020-2025

Huazhong Agricultural University
2022-2025

Fujian Agriculture and Forestry University
2019-2024

Center of Hubei Cooperative Innovation for Emissions Trading System
2024

Shanghai Zhangjiang Laboratory
2024

Sichuan Agricultural University
2021

Institute of Pomology
2021

Howard Hughes Medical Institute
2015

Johns Hopkins University
2015

The Hippo signaling pathway converges on YAP to regulate growth, differentiation, and regeneration. Previous studies with overexpressed proteins have shown that is phosphorylated by its upstream kinase, Lats1/2, multiple sites, including an evolutionarily conserved 14-3-3-binding site whose phosphorylation believed inhibit excluding it from the nucleus. Indeed, nuclear localization of or decreased at this (S168 in Drosophila , S127 humans, S112 mice) widely used current literature as a...

10.1101/gad.264234.115 article EN Genes & Development 2015-06-15

Summary Aspergillus flavus is an opportunistic fungal pathogen that colonizes agriculture crops with aflatoxin contamination. We found Perillaldehyde (PAE) effectively inhibited A . viability and production by inducing excess reactive oxygen species (ROS). Transcriptome analysis indicated the Gα protein FadA was significantly induced PAE. Functional characterization of showed it important for asexual development biosynthesis regulation cAMP‐PKA signalling. The Δ fadA mutant more sensitive to...

10.1111/1462-2920.15940 article EN Environmental Microbiology 2022-02-22

Eukaryotic DNA methylation has been receiving increasing attention for its crucial epigenetic regulatory function. The recently developed single-molecule real-time (SMRT) sequencing technology provides an efficient way to detect N6-methyladenine (6mA) and N4-methylcytosine (4mC) modifications at a single-nucleotide resolution. family Rosaceae contains horticultural plants with wide range of economic importance. However, little is currently known regarding the genome-wide distribution...

10.1038/s41438-019-0160-4 article EN cc-by Horticulture Research 2019-06-14

The filament fungal pathogen, Aspergillus flavus, spreads worldwide and contaminates several important crops. Histone posttranslational modifications are deeply involved in development virulence, but the biological function of histone methyltransferase AflSet1 A. flavus is still unknown. In study, Aflset1 deletion strain was constructed through homologous recombination, it found that up-regulates hyphae growth, promotes conidiation by sporulation regulation genes: abaA brlA. It also involves...

10.3389/fmicb.2020.00234 article EN cc-by Frontiers in Microbiology 2020-02-18

Rosaceae comprises numerous types of economically important fruits, ornamentals, and timber. The lack plastome characteristics has blocked our understanding the evolution plastid genes crops. Using comparative genomics phylogenomics, we analyzed 121 plastomes 54 taxa from 13 genera, predominantly including Cerasus (true cherry) its relatives. To knowledge, generated first comprehensive map genomic variation across plastomes. Contraction/expansion inverted repeat regions sequence losses two...

10.3389/fpls.2021.736053 article EN cc-by Frontiers in Plant Science 2021-11-19

Abstract BACKGROUND Magnaporthe oryzae is the causal agent of rice blast disease. Pydiflumetofen, a novel succinate dehydrogenase inhibitor (SDHI), has promising potential for controlling owing to antifungal activity this fungicide. RESULTS The median effective concentration (EC 50 ) 18 M. isolates obtained from field pydiflumetofen ranged 0.3197 0.7381 μg mL −1 . Further investigation revealed eight point‐mutation types in MoSdhB/C/D genes, including MoSdhB R243H , H245Y/L/Q I247T MoSdhC...

10.1002/ps.8885 article EN Pest Management Science 2025-05-12

ABSTRACT Lawsonia intracellularis (LI), Brachyspira hyodysenteriae (Bhy), and Clostridium perfringens (Cp) are three common swine enteric pathogens widespread worldwide, leading to huge economic losses the pig industry. LI, Bhy, Cp co-infected should not be distinguished, detection of bacterial nucleic acids in feces allows rapid identification whether a herd is infected with these pathogens. In this study, we developed optimized TaqMan triple quantitative real-time PCR (qPCR) method for Cp,...

10.1128/spectrum.03237-24 article EN cc-by Microbiology Spectrum 2025-05-14

In Aspergillus, the cyclic adenosine monophosphate (cAMP) signaling modulates asexual development and mycotoxin biosynthesis. Here, we characterize cyclase-associated protein Cap in pathogenic fungus Aspergillus flauvs. The cap disruption mutant exhibited dramatic reduction hyphal growth, conidiation, spore germination, while an enhanced production of sclerotia was observed this mutant. Importantly, gene found to be important for biosynthesis virulence. domain deletion study demonstrated...

10.1021/acs.jafc.8b07115 article EN Journal of Agricultural and Food Chemistry 2019-03-27

Polymer-based nanomaterials have exhibited promising alternative avenues to combat the globe challenge of multidrug-resistant bacterial infection. However, most reported polymeric facially linear amphiphilic structures with positive net charges, which may lead nonspecific binding, high hemolysis, and uncontrollable self-organization, limiting their practical applications. In this contribution, we report a one-dimensional glyconanorod (GNR) through self-assembly well-defined...

10.1021/acs.biomac.2c01440 article EN Biomacromolecules 2023-01-18

Abstract Anthocyanins are an essential class of flavonoids that represent a large group plant secondary metabolites. microRNAs (miRNAs) can target TFs related to anthocyanin synthesis and inhibit their expression, thereby affecting the expression level key downstream structural genes ultimately regulating accumulation anthocyanins in plants. Nevertheless, regulatory function miR156a synthesis, especially potatoes, has yet be investigated. In this study, its gene StSPL9 were screened analyzed...

10.1101/2025.01.06.631517 preprint EN bioRxiv (Cold Spring Harbor Laboratory) 2025-01-06

RGS proteins, as crucial regulators of the G protein signaling pathway, are widely distributed in fungi, while little is known about their roles Aspergillus flavus development and aflatoxin. In this study, we identified six proteins A. revealed that these have important functions regulation conidia, sclerotia, aflatoxin formation.

10.1128/aem.00244-22 article EN Applied and Environmental Microbiology 2022-05-31

MicroRNAs (miRNAs) are types of endogenous non-coding small RNAs found in eukaryotes that 18-25 nucleotides long. miRNAs considered to be key regulatory factors the expression target mRNA. The roles involved regulation anthocyanin accumulation pigmented potatoes have not been systematically reported. In this study, differentially expressed and their genes during different developmental stages purple potato (

10.1002/pld3.418 article EN cc-by-nc-nd Plant Direct 2022-07-01

Pseudorabies virus (PRV) represents a leading threat to the global pig industry. Generally, pigs exhibit pronounced age resistance against PRV, and generally does not cause severe clinical signs even death in old pigs. However, we characterized two PRV strains (HeN21 HuB20) associated with respiratory neuronal Among these strains, HeN21 was isolated from tonsil of 24-week-old that died PRV-outbreak farm where commercial attenuated vaccine developed based on variant used; while, HuB20 lung...

10.1155/2023/8855739 article EN cc-by Transboundary and Emerging Diseases 2023-02-28

Dnm1 was found to be involved in fungal development and virulence, mediated peroxisomal fission, normal endocytosis. This finding provides new insights into the cellular processes pathogenicity entomopathogenic fungi.

10.1128/aem.01217-20 article EN Applied and Environmental Microbiology 2020-06-30

Glycopolymer-supported silver nanoparticles (AgNPs) have demonstrated a promising alternative to antibiotics for the treatment of multidrug-resistant bacteria-infected diseases. In this contribution, we report class biohybrid glycopolymersome-supported AgNPs, which are capable effectively killing bacteria and disrupting related biofilms. First all, glycopolymersomes with controllable structures were massively fabricated through reversible addition–fragmentation chain transfer (RAFT)...

10.1021/acs.biomac.3c01003 article EN Biomacromolecules 2023-12-15

Pigmented potatoes (Solanum tuberosum L.) are rich in anthocyanin, which have antioxidantiy and play an important role health medical. Nevertheless, the regulation mechanism of anthocyanins purple potato at different growth stages remain unclear. In this study, through using high-throughput sequencing systematic bioinformatics analysis, a total 7,176 significantly expressed genes (DEGs) were discovered from Huasong 66 tubers developmental stages. Through GO KEGG enrichment it was found that,...

10.1186/s12864-024-11082-8 article EN cc-by-nc-nd BMC Genomics 2024-11-29

Abstract Background Salmonella is a leading foodborne and zoonotic pathogen, widely distributed in different nodes of the pork supply chain. In recent years, increasing prevalence antimicrobial resistant poses threat to global public health. The purpose this study pig slaughterhouses Hubei Province China, explore effect using lytic bacteriophages fighting against . Results We collected total 1289 samples including anal swabs pigs (862/1289), environmental (204/1289), carcass surface...

10.1186/s12917-022-03372-8 article EN cc-by BMC Veterinary Research 2022-07-12

Viruses existed in wastewaters might pose a biosecurity risk to human and animal health. However, it is generally difficult detect viruses wastewater directly as they usually occur low numbers water. Therefore, processing large volumes of water concentrate much smaller final volume for detection necessary. Glass wool has been recognized an effective material multiple water, this study, we assessed the use glass wools on concentrating pseudorabies virus (PRV), African swine fever (ASFV),...

10.7717/peerj.16171 article EN cc-by PeerJ 2023-10-04
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