Sho Nishida

ORCID: 0000-0001-8157-4636
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About
Contact & Profiles
Research Areas
  • Plant Micronutrient Interactions and Effects
  • Plant Stress Responses and Tolerance
  • Plant nutrient uptake and metabolism
  • Aluminum toxicity and tolerance in plants and animals
  • Plant Molecular Biology Research
  • Phytase and its Applications
  • Nitrogen and Sulfur Effects on Brassica
  • Trace Elements in Health
  • Radioactive contamination and transfer
  • Folate and B Vitamins Research
  • Genomics, phytochemicals, and oxidative stress
  • Plant Disease Resistance and Genetics
  • Phosphorus and nutrient management
  • Rice Cultivation and Yield Improvement
  • RNA modifications and cancer
  • RNA Research and Splicing
  • Epigenetics and DNA Methylation
  • Selenium in Biological Systems
  • Plant Genetic and Mutation Studies
  • Mercury impact and mitigation studies
  • Heavy metals in environment
  • Arsenic contamination and mitigation
  • Cancer-related molecular mechanisms research
  • Ion-surface interactions and analysis
  • Drug Transport and Resistance Mechanisms

Saga University
2020-2025

Kagoshima University
2021-2023

Hiroshima University
2016-2019

Chuo University
2016-2019

The University of Tokyo
2013-2017

Mie University
2008-2015

The Fertilizer Institute
2015

Fukuoka University
2014

Institute of Biosciences and Bioresources
2012

University of Miyazaki
2012

Nickel (Ni) is an essential nutrient for plants, but excessive amounts can be toxic. Ni competes with iron (Fe) in vivo, raising the possibility that competitively taken up via Fe uptake system plants. Here, we show evidence AtIRT1, primary Fe(2+) transporter root, mediates accumulation Arabidopsis thaliana. In hydroponic cultures, excess exposure increased and relative transcription level of AtIRT1 roots, indicating induces expression roots. An Fe-deficient treatment suggesting was absorbed...

10.1093/pcp/pcr089 article EN Plant and Cell Physiology 2011-07-08

Protein phosphorylation events play key roles in maintaining cellular ion homeostasis higher plants, and the regulatory of these Na+ K+ transport have been studied extensively. However, mechanisms governing Mg2+ plants remain poorly understood, despite vital function. A member subclass III sucrose nonfermenting-1-related protein kinase2 (SnRK2), SRK2D/SnRK2.2, functions as a positive regulator abscisic acid (ABA)-mediated signaling response to water deficit stresses Arabidopsis (Arabidopsis...

10.1104/pp.114.249870 article EN PLANT PHYSIOLOGY 2015-01-22

Summary The alteration of transcript structure contributes to transcriptome plasticity. In this study, we analyzed the genome‐wide response exon combination patterns deficiencies in 12 different nutrients Arabidopsis thaliana roots. RNA sequencing analysis and bioinformatics using a simulation survey revealed more than 600 genes showing varying combinations. overlap between differential expression ( DE ) DC was notably low. Additionally, gene ontology showed that functions were not shared...

10.1111/tpj.13606 article EN The Plant Journal 2017-06-06

Summary Hakea laurina , a woody Proteaceae, naturally occurs in severely phosphorus (P)‐impoverished habitats southwest Australia. It develops distinctive cluster roots that exhibit high capacity for carboxylate exudation and acid phosphatase activity, contributing to its P acquisition. However, the molecular mechanisms underlying these physiological functions remain poorly understood. We explored cluster‐root transcriptome using de novo RNA‐Seq identified Aluminum‐activated Malate...

10.1111/nph.70010 article EN cc-by New Phytologist 2025-02-24

Excessive accumulation of nickel (Ni) can be toxic to plants. In Arabidopsis thaliana, the Fe2+ transporter, iron (Fe)-regulated transporter1 (IRT1), mediates Fe uptake and also implicates in Ni2+ at roots; however, underlying mechanism remains unelucidated. present study, we found that zinc (Zn) deficient conditions resulted increased Ni plants, particularly roots, A. thaliana. order elucidate mechanisms correlating condition, traced 63Ni isotope response Zn (i) deficiency induces...

10.3390/ijms16059420 article EN International Journal of Molecular Sciences 2015-04-27

Long intergenic noncoding RNAs (lincRNAs) play critical roles in transcriptional and post-transcriptional regulation of gene expression a wide variety organisms. Thousands lincRNAs have been identified plant genomes, although their functions remain mostly uncharacterized. Here, we report genome-wide survey involved the response to low-nutrient conditions Arabidopsis thaliana. We used RNA sequencing data derived from A. thaliana roots exposed low levels 12 different nutrients. Using...

10.1093/pcp/pcz048 article EN Plant and Cell Physiology 2019-03-19

Excessive amounts of nickel (Ni) can be toxic for plants. Recently, we reported that IRT1, the primary iron (Fe) uptake transporter in roots, meditates excess Ni accumulation Arabidopsis thaliana. We also found exposure increases IRT1 expression suggesting is further induced by stress. Here, show induces not only but FRO2, a ferric reductase root epidermis, and FIT, transcription factor regulating genes involved Fe homeostasis including FRO2. This result suggests an Fe-deficient response...

10.4161/psb.19263 article EN Plant Signaling & Behavior 2012-03-01

One mechanism of arsenic detoxification in plants is synthesis phytochelatins from glutathione a sulfur-dependent manner. This study examined the contribution sulfate transporter, SULTR1;2, tolerance terms sulfur metabolism Arabidopsis thaliana (L.) Heynh. Comparative analysis SULTR mutants showed that defective mutations SULTR1;2 resulted an increased sensitivity, both shoots and roots, establishing required for tolerance. We subsequently quantified total content levels compounds...

10.1080/00380768.2016.1150790 article EN Soil Science & Plant Nutrition 2016-03-01

Abstract Rice production is seriously affected by saline-alkaline stress worldwide. To elucidate the tolerance mechanisms in a novel tolerant rice variety, Shwe Nang Gyi (SNG), we investigated ion accumulation SNG and Koshihikari (KSH), which sensitive candidates for inducible genes using RNA-seq. had superior capacity, such as K Zn, compared to KSH. In contrast, accumulated same level of Na content its leaf blades KSH despite higher dry weight blades. We further found that expression...

10.1007/s10265-024-01529-0 article EN cc-by Journal of Plant Research 2024-03-01

A number of metal hyperaccumulator plants, including nickel (Ni) hyperaccumulators, have been identified in the genus Noccaea. The ability to accumulate Ni shoots varies widely among species and ecotypes this genus; however, little is known about molecular mechanisms underlying intra- inter-specific variation. Here, hydroponic culture, we compared accumulation patterns between N. japonica, which originated Ni-enriched serpentine soils Mt. Yubari (Hokkaido, Japan), caerulescens ecotype...

10.3389/fpls.2020.00610 article EN cc-by Frontiers in Plant Science 2020-06-03

Glucosinolates (GSLs) are sulfur (S)-rich specialized metabolites present in Brassicales order plants. Our previous study found that GSL can function as a S source Arabidopsis seedlings via its catabolism catalyzed by two β-glucosidases (BGLUs), BGLU28 and BGLU30. However, profiles plants vary among growth stages organs, the potential contribution of BGLU28/30-dependent at reproductive stage needs verification. Thus, this study, we assessed growth, metabolic transcriptional phenotypes mature...

10.1093/pcp/pcad075 article EN Plant and Cell Physiology 2023-07-18

Our earlier study demonstrated that the landrace of Japonica rice, Akamai exhibits low-P (phosphorous) tolerance mechanisms compared to conventional type cultivar, Koshihikari. The present examined genotypic difference yield, plasticity root growth, and internal utilization acquired P (allocation pattern biomass among different vegetative reproductive organs) two contrasting cultivars in response P-deficiency. Each cultivar was grown until maturity with (+P) without (–P) supply pots (two...

10.1080/00380768.2018.1436941 article EN Soil Science & Plant Nutrition 2018-02-12

The manipulation of seed phosphorus is important for seedling growth and environmental P sustainability in agriculture. mechanism regulating content seed, however, poorly understood. To study regulation total P, we focused on phytic acid (inositol hexakisphosphate; InsP₆) biosynthesis-related genes, as InsP₆ a major storage form seeds. rice (Oryza sativa L.) low mutant lpa1-1 has been identified homolog archael 2-phosphoglycerate kinase. might act an inositol monophosphate kinase, which...

10.3390/plants4020196 article EN cc-by Plants 2015-04-24

RAB11 GTPases, widely conserved members of RAB small have evolved in a unique way plants; plant has notable diversity compared with animals and yeast. Recently, we shown that RABA1, subgroup Arabidopsis group, are required for salinity stress tolerance. To obtain clue to understand its underlying mechanism, here investigate whether RABA1 regulates sodium transport across the plasma membrane accumulation vacuole. The results indicate raba1 quadruple mutant is not defective import...

10.4161/psb.25377 article EN Plant Signaling & Behavior 2013-07-29

Arbuscular mycorrhizas support nutrient uptake from the soil. Here we demonstrated Iron-59 (59Fe) in maize (Zea mays L.) through mycorrhizal roots. colonization did not strongly induce Strategy II-related genes, but putative iron transporter OPT8a and OPT8b, were induced by more than 50-fold. Our data provide a previously undescribed gene expression mode related to system of II plants.

10.1080/00380768.2014.949854 article EN Soil Science & Plant Nutrition 2014-08-20

Metabolomic studies conducted for evaluating cancer pathogenesis and progression by monitoring the amino acids metabolic balance hold great promise assessing current future anticancer treatments. We performed a comprehensive quantification of 21 concentrations in cultured human colorectal adenocarcinoma cells treated with drugs 5-fluorouracil, irinotecan, cisplatin. A precolumn fluorescence derivatization-HPLC method involving 6-aminoquinolyl-N-hydroxysuccinimidyl carbamate was used. Amino...

10.2116/analsci.30.751 article EN Analytical Sciences 2014-07-01

Potassium (K) is a major plant nutrient. K+ taken up by channel and transporter proteins in roots translocated from to shoots via the xylem. In Arabidopsis thaliana, NPF7.3 mediates loading into xylem transcription factor MYB59 responsible for expression. Here, we demonstrate that regulated alternative splicing response K availability. Three isoforms of are detected roots: an isoform with first intron spliced out encodes protein full DNA-binding motif (MYB59α), two retained partially or...

10.1093/pcp/pcad080 article EN Plant and Cell Physiology 2023-07-26
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