Yu Cheng

ORCID: 0000-0002-3816-3417
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About
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Research Areas
  • Plant Molecular Biology Research
  • Plant Genetic and Mutation Studies
  • Plant Reproductive Biology
  • Chromosomal and Genetic Variations
  • Plant Virus Research Studies
  • Research in Cotton Cultivation
  • Polysaccharides Composition and Applications
  • Soil Carbon and Nitrogen Dynamics
  • Reproductive Biology and Fertility
  • Plant and Fungal Interactions Research
  • Botanical Research and Applications
  • Ubiquitin and proteasome pathways
  • Fire effects on ecosystems
  • Ginkgo biloba and Cashew Applications
  • Quality and Safety in Healthcare
  • Cancer-related molecular mechanisms research
  • Health, psychology, and well-being
  • Hand Gesture Recognition Systems
  • Histone Deacetylase Inhibitors Research
  • Endoplasmic Reticulum Stress and Disease
  • Forest Ecology and Biodiversity Studies
  • Corneal Surgery and Treatments
  • Colorectal Cancer Surgical Treatments
  • Polyomavirus and related diseases
  • Stoma care and complications

Shanghai East Hospital
2025

West China Hospital of Sichuan University
2025

Hohai University
2025

Sun Yat-sen University
2021-2024

Sixth Affiliated Hospital of Sun Yat-sen University
2024

Zhejiang University
2022-2024

Chinese Academy of Agricultural Sciences
2023

Institute of Plant Protection
2023

ZheJiang Academy of Agricultural Sciences
2023

Jilin Agricultural University
2022

Structural variations (SVs) have long been described as being involved in the origin, adaption, and domestication of species. However, underlying genetic genomic mechanisms are poorly understood. Here, we report a high-quality genome assembly Gossypium barbadense acc. Tanguis, landrace that is closely related to formation extra-long-staple (ELS) cultivated cotton. An SV-based pan-genome (Pan-SV) was then constructed using total 182 593 non-redundant SVs, including 2236 inversions, 97 398...

10.1016/j.molp.2023.02.004 article EN cc-by-nc-nd Molecular Plant 2023-02-09

Abstract The cereal endosperm is a major factor determining seed size and shape. However, the molecular mechanisms of development are not fully understood. Long noncoding RNAs (lncRNAs) function in various biological processes. Here we show lncRNA, MISSEN , that plays an essential role early rice ( Oryza sativa ). parent-of-origin lncRNA expressed endosperm, negatively regulates development, leading to prominent dent bulge seed. Mechanistically, functions through hijacking helicase family...

10.1038/s41467-021-26795-7 article EN cc-by Nature Communications 2021-11-11

Long noncoding RNA (lncRNA) can regulate various physiological and pathological processes through multiple molecular mechanisms in cis trans. However, the role of lncRNAs cardiac hypertrophy is yet to be fully elucidated. A mouse lncRNA microarray was used identify differentially expressed hearts following transverse aortic constriction-induced pressure overload comparing sham-operated samples. The direct impact one lncRNA, Ahit, on cardiomyocyte characterized neonatal rat cardiomyocytes...

10.1161/circheartfailure.119.006525 article EN Circulation Heart Failure 2020-01-01

The WRKY transcription factors are unique regulatory proteins in plants, which important the stress responses of plants. In this study, 113 genes were identified from apple genome GDDH13 and a comprehensive analysis was performed, including chromosome mapping, phylogenetic, motif collinearity analysis. MdWRKYs expressed different tissues, such as seeds, flowers, stems leaves. We analyzed seven groups found that all them localized nucleus. Among MdWRKYs, MdWRKY70L induced by both drought salt...

10.3390/genes13061068 article EN Genes 2022-06-15

The incidence rate of colorectal cancer (CRC) is rising among adults under the age 50 (early-onset cancer, EOCRC). Post-ostomy dysfunction, along with negative perceptions due to incorrect public views and a decline in quality life, has significant impact on these individuals, their families, social relationships. By understanding adaptation process post-ostomy EOCRC(POEOCRC) patients, this study aims provide information for developing targeted nursing interventions population. Based...

10.3389/fpsyt.2024.1497428 article EN cc-by Frontiers in Psychiatry 2025-01-21

Depression and diet are both common modifiable factors related to mortality rates among individuals with cancer, but their combined effects remained underexplored. We aimed comprehensively evaluate the independent joint association of depressive symptoms dietary patterns cancer survivors. A cohort US survivors (3,011 eligible participants, representing 20 million patients) were collected from National Health Nutrition Examination Survey (NHANES) between 2005 2018. Depressive assessed Patient...

10.1186/s12885-025-13945-z article EN cc-by-nc-nd BMC Cancer 2025-03-28

Abstract Background Plants have the remarkable ability to generate callus, a pluripotent cell mass that acquires competence for subsequent tissue regeneration. Global chromatin remodeling is required this fate transition, but how process regulated not fully understood. Chromatin-enriched noncoding RNAs (cheRNAs) are thought play important roles in maintaining state. However, whether cheRNAs participate somatic regeneration plants has yet been clarified. Results To uncover characteristics and...

10.1186/s13059-022-02608-y article EN cc-by Genome biology 2022-01-19

Allotetraploid upland cotton (Gossypium hirsutum L.) is native to the Mesoamerican and Caribbean regions, had been improved in southern United States by mid-eighteenth century, was then dispersed worldwide. However, a Hainan Island Native Cotton (HIC) has long grown extensively on Island, China.

10.1016/j.jare.2023.03.006 article EN cc-by-nc-nd Journal of Advanced Research 2023-03-24

Myeloid cell leukaemia 1 (MCL1) is a pro-survival Bcl-2 family protein that plays important roles in survival, proliferation, differentiation and tumourigenesis. MCL1 fast-turnover degraded via an ubiquitination/proteasome-dependent mechanism. Although several E3 ligases have been discovered to promote the ubiquitination of MCL1, deubiquitinating enzyme (DUB) regulates its stability requires further investigation.The immunoprecipitation was used determine interaction between OTUD1 MCL1. The...

10.1186/s12935-019-0936-5 article EN cc-by Cancer Cell International 2019-08-27

Verticillium , representing one of the world’s major pathogens, causes wilt in important woody species, ornamentals, agricultural, etc., consequently resulting a serious decline production and quality, especially cotton. Gossupium hirutum Gossypium barbadense are two kinds widely cultivated cotton species that suffer from wilt, while G. has much higher resistance toward it than hirsutum . However, molecular mechanism regarding their divergence remains largely unknown. In current study, cv....

10.3389/fpls.2022.979585 article EN cc-by Frontiers in Plant Science 2022-08-01

Abstract MEIOSIS ARRESTED AT LEPTOTENE1 (MEL1), a rice (Oryza sativa) Argonaute (AGO) protein, has been reported to function specifically at premeiotic and meiotic stages of germ cell development is associated with novel class cell-specific small noncoding RNAs called phased (phasiRNAs). MEL1 accumulation temporally spatially regulated eliminated after meiosis. However, the metabolism turnover (i.e. homeostasis) during remains unknown. Here, we show that ubiquitinated subsequently degraded...

10.1093/plcell/koab138 article EN The Plant Cell 2021-05-15

Neoadjuvant therapy for locally advanced colorectal cancer has made great progress in the past 20 years, but there are still limitations such as side effects, organ dysfunction and unsatisfactory control of metastasis. In recent with improvement surgical techniques further development molecular research, how to improve local control, reduce distant metastasis, even avoid surgery according clinical remission achieve preservation, is current demand research goal. With advancement different...

10.3760/cma.j.cn441530-20231231-00235 article EN PubMed 2024-04-25

Introduction Aphids form a stable and mutually beneficial relationship with their primary symbiont Buchnera aphidicola , which play an important role in providing the missing nutrients to host aphid. Based on genome sequence of wheat aphid Siotobion miscanthi its that we obtained our previously study, identified metabolic relay gene, ilvA involved isoleucine synthesis pathway between aphids . Method In this location structure gene genome, expression level different instars tissues aphids,...

10.3389/fpls.2022.1092638 article EN cc-by Frontiers in Plant Science 2023-01-18

Merkel cell carcinoma (MCC) is a rare primary cutaneous neoplasm of neuroendocrine the skin. About 80% MCC occurs due to polyomavirus (MCPyV) and 20% tumors usually occur severe UV exposure which more aggressive type MCC. It tends have an increased incidence rate among elderly immunosuppressed individuals. On therapeutic level, sub-classification through molecular subtyping has emerged as promising technique for prognosis. In current study, two consistent distinct subtypes MCCs were...

10.1016/j.tranon.2020.100816 article EN cc-by-nc-nd Translational Oncology 2020-08-06

Heterosis has revolutionized crop breeding, enhancing global agricultural production. However, the mechanisms underlying heterosis remain obscure. Xiangzamian 2# (XZM2), a super hybrid upland cotton (Gossypium hirsutum L.) characterized by high-yield heterosis, been developed and extensively planted in China. We conducted systematic analysis of CRI12 J8891, two parents XZM2. aimed to reveal precise genetic information role non-syntenic divergence shaping laying foundation for advancing...

10.1016/j.jare.2024.08.010 article EN cc-by-nc-nd Journal of Advanced Research 2024-08-01

Although the application of heterosis has significantly increased crop yield over past century, mechanisms underlying this phenomenon still remain obscure. Here, we applied transcriptome sequencing to unravel impacts parental expression differences and transcriptomic reprogramming in cotton heterosis.

10.3389/fpls.2024.1450963 article EN cc-by Frontiers in Plant Science 2024-08-06
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