Dawid Płonka

ORCID: 0000-0002-4076-9231
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About
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Research Areas
  • Trace Elements in Health
  • Drug Transport and Resistance Mechanisms
  • Alzheimer's disease research and treatments
  • Iron Metabolism and Disorders
  • Amino Acid Enzymes and Metabolism
  • Molecular Sensors and Ion Detection
  • Hemoglobinopathies and Related Disorders
  • Metal complexes synthesis and properties
  • Enzyme Structure and Function
  • Neuroscience and Neuropharmacology Research
  • Protein Kinase Regulation and GTPase Signaling
  • Tryptophan and brain disorders
  • Metalloenzymes and iron-sulfur proteins
  • Contact Dermatitis and Allergies
  • Computational Drug Discovery Methods
  • Biochemical effects in animals
  • DNA and Nucleic Acid Chemistry
  • Mass Spectrometry Techniques and Applications
  • Erythropoietin and Anemia Treatment
  • Dermatology and Skin Diseases
  • Epigenetics and DNA Methylation
  • Food Allergy and Anaphylaxis Research
  • Heavy Metal Exposure and Toxicity
  • Nanocluster Synthesis and Applications

Institute of Biochemistry and Biophysics, Polish Academy of Sciences
2016-2023

Polish Academy of Sciences
2018-2020

Aβ4-42 is a major species of Aβ peptide in the brains both healthy individuals and those affected by Alzheimer's disease. It has recently been demonstrated to bind Cu(II) with an affinity approximately 3000 times higher than commonly studied Aβ1-42 Aβ1-40 peptides, which are implicated pathogenesis Metallothionein-3, protein considered orchestrate copper zinc metabolism brain provide antioxidant protection, was shown extract from when acting its native Zn7 MT-3 form. This reaction assumed...

10.1002/anie.201511968 article EN Angewandte Chemie International Edition 2016-05-30

Silver (Ag(<sc>i</sc>)) binding to consensus zinc fingers (ZFs) causes Zn(<sc>ii</sc>) release inducing a gradual disruption of the hydrophobic core, followed by an overall conformational change and formation highly stable Ag<sub>n</sub>S<sub>n</sub>clusters.

10.1039/c9cc09418k article EN cc-by Chemical Communications 2020-01-01

The catabolism of β-amyloid (Aβ) is carried out by numerous endopeptidases including neprilysin, which hydrolyzes peptide bonds preceding positions 4, 10, and 12 to yield Aβ4–9 a minor Aβ12–x species. Alternative processing the amyloid precursor protein β-secretase also generates Aβ11–x All these peptides contain Xxx-Yyy-His sequence, known as an ATCUN or NTS motif, making them strong chelators Cu(II) ions. We synthesized corresponding peptides, Phe-Arg-His-Asp-Ser-Gly-OH (Aβ4–9),...

10.1021/acs.inorgchem.8b03051 article EN Inorganic Chemistry 2018-12-24

The Aβ5–x peptides (x = 38, 40, 42) are minor Aβ species in normal brains but elevated upon the application of inhibitors processing enzymes. They interesting from point view coordination chemistry for presence an Arg-His metal binding sequence at their N-terminus capable forming a 3-nitrogen (3N) three-coordinate chelate system. Similar sequences other bioactive were shown to bind Cu(II) ions biological systems. Therefore, we investigated complex formation and reactivity series truncated...

10.1021/acs.inorgchem.0c01773 article EN cc-by Inorganic Chemistry 2020-09-14

Copper transfer from Cu(<sc>ii</sc>)amyloid-β<sub>4–16</sub> to human Zn<sub>7</sub>-metallothionein-3 can be accelerated by glutamate and lowering the Zn-load of metallothionein-3 with EDTA.

10.1039/c8cc06221h article EN Chemical Communications 2018-01-01

The toolset of mass spectrometry (MS) is still expanding, and the number metal ion complexes researched this way growing. Cu(II) forms particularly strong peptide biological interest which are frequent objects MS studies, but quantitative aspects some reported results at odds with those experiments performed in solution. usually characterized by fast ligand exchange rates, despite their high affinity, we speculated that such kinetic lability could be responsible for observed discrepancies....

10.1021/jasms.1c00206 article EN cc-by Journal of the American Society for Mass Spectrometry 2021-11-05

Aβ4-42 is the major subspecies of Aβ peptides characterized by avid Cu(II) binding via ATCUN/NTS motif. It thought to be produced in vivo proteolytically neprilysin, but vitro experiments presence ions indicated preferable formation C-terminally truncated species including CuIIAβ4-16, CuIIAβ4-9, and also CuIIAβ12-16, all with nearly femtomolar affinities at neutral pH. Such small complexes may serve as shuttles for copper clearance from extracellular brain spaces, on condition they could...

10.1021/acs.inorgchem.0c00427 article EN cc-by Inorganic Chemistry 2020-03-26

N-Truncated Aβ4-42 displays a high binding affinity with CuII. A mechanistic scheme of the interactions between and CuII has been proposed using fluorescence approach. The timescales different conversion steps were determined. This kinetic mechanism indicates potential synaptic functions during neurotransmission.

10.1039/c9mt00299e article EN cc-by Metallomics 2020-04-01

The Cu(II) and Zn(II) binding abilities of Gly-His-Thr-Asp-amide (GHTD-am), a tetrapeptide coreleased from the pancreas along with insulin, were studied using UV–vis circular dichroism spectroscopies, potentiometry, calorimetry. GHTD-am is very strong chelator, forming three-nitrogen complex conditional affinity constant CK at pH 7.4 4.5 × 1012 M–1. fourth coordination site can be occupied by solvent molecule or ternary ligand, such as imidazole, on order several hundred reciprocal molar....

10.1021/acs.inorgchem.8b02841 article EN Inorganic Chemistry 2018-11-27

Abstract Numerous inhibitors of protein kinases act on the basis competition, targeting ATP binding site. In this work, we present a procedure rational design bi-substrate inhibitor, complemented with biophysical assays. The type are commonly engineered by combining ligands carrying an ATP-like part peptide or peptide-mimicking fragment that determines specificity. Approach presented in paper led to generation specific system for independent screening efficient and peptides, means...

10.1038/s41598-019-47404-0 article EN cc-by Scientific Reports 2019-07-29

Nickel is toxic to humans. Its compounds are carcinogenic. Furthermore, nickel allergy a severe health problem that affects approximately 10-20% of The mechanism by which these conditions develop remains unclear, but it may involve the cleavage specific proteins ions. Ni(II) ions cleave peptide bond preceding Ser/Thr-Xaa-His sequence. Such sequences present in all four enzymes melatonin biosynthesis pathway, i.e., tryptophan 5-hydroxylase 1, aromatic-l-amino-acid decarboxylase, serotonin...

10.3390/molecules27175582 article EN cc-by Molecules 2022-08-30

Abstract Aβ4‐42 is a major species of Aβ peptide in the brains both healthy individuals and those affected by Alzheimer's disease. It has recently been demonstrated to bind Cu II with an affinity approximately 3000 times higher than commonly studied Aβ1‐42 Aβ1‐40 peptides, which are implicated pathogenesis Metallothionein‐3, protein considered orchestrate copper zinc metabolism brain provide antioxidant protection, was shown extract from when acting its native Zn 7 MT‐3 form. This reaction...

10.1002/ange.201511968 article EN Angewandte Chemie 2016-05-30

Deficiency in a principal epidermal barrier protein, filaggrin (FLG), is associated with multiple allergic manifestations, including atopic dermatitis and contact allergy to nickel. Toxicity caused by dermal respiratory exposures of the general population nickel-containing objects particles deleterious side effect modern technologies. Its molecular mechanism may include peptide bond hydrolysis X

10.3389/fmolb.2022.828674 article EN cc-by Frontiers in Molecular Biosciences 2022-03-10

Hepcidin is an iron regulatory hormone that does not bind directly. Instead, its mature 25-peptide form (H25) contains a binding site for other metals, the so-called ATCUN/NTS (amino-terminal Cu/Ni site). The Cu(II)-hepcidin complex was previously studied, but due to poor solubility and difficult handling of peptide definitive account on equilibrium obtained reliably. In this study we performed series fluorescence competition experiments between H25 model peptides containing same determined...

10.1016/j.jinorgbio.2023.112364 article EN cc-by Journal of Inorganic Biochemistry 2023-09-02

Hepcidin (DTHFPICIFCCGCCHRSKCGMCCKT), an iron-regulatory hormone, is a 25-amino-acid peptide with four intramolecular disulfide bonds circulating in blood. Its hormonal activity indirect and consists of marking ferroportin-1 (an iron exporter) for degradation. biosynthesis involves the N-terminally extended precursors prepro-hepcidin pro-hepcidin, processed by peptidases to final 25-peptide form. A sequence-specific formation export oxidized bloodstream follows. In this study we considered...

10.3390/ijms232415483 article EN International Journal of Molecular Sciences 2022-12-07

Hepcidin is an iron regulatory hormone that does not bind directly. Instead, its mature 25-peptide form (H25) contains a binding site for other metals, the so-called ATCUN/NTS (amino-terminal Cu/Ni site). The Cu(II)-hepcidin complex was previously studied, but due to poor solubility and difficult handling of peptide definitive account on equilibrium obtained reliably. In this study we performed series fluorescence competition experiments between H25 model peptides containing same determined...

10.2139/ssrn.4511572 preprint EN 2023-01-01

Hepcidin (DTHFPICIFCCGCCHRSKCGMCCKT), an iron regulatory hormone is a 25 amino acid peptide with 4 intramolecular disulfide bonds, circulating in blood. Its hormonal activity indirect and consists of marking ferroportin-1 (an exporter) for degradation. biosynthesis involves N-terminally extended precursors prepro-hepcidin pro-hepcidin, processed by peptidases to the final 25-peptide form. A sequence-specific formation bonds export oxidized bloodstream follows. In this study we considered...

10.20944/preprints202210.0457.v1 preprint EN 2022-10-28
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