Benjamin A. Thomas

ORCID: 0000-0002-9784-1177
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Research Areas
  • Medical Imaging Techniques and Applications
  • Advanced MRI Techniques and Applications
  • Radiomics and Machine Learning in Medical Imaging
  • Advanced X-ray and CT Imaging
  • MRI in cancer diagnosis
  • Teaching and Learning Programming
  • Advanced Radiotherapy Techniques
  • Lanthanide and Transition Metal Complexes
  • Photoacoustic and Ultrasonic Imaging
  • Diagnosis and treatment of tuberculosis
  • Digital Radiography and Breast Imaging
  • Tuberculosis Research and Epidemiology
  • Alzheimer's disease research and treatments
  • Infectious Diseases and Tuberculosis
  • Medical Image Segmentation Techniques
  • Dementia and Cognitive Impairment Research
  • Atomic and Subatomic Physics Research
  • Peripheral Neuropathies and Disorders
  • Sarcoidosis and Beryllium Toxicity Research
  • SARS-CoV-2 and COVID-19 Research
  • Numerical Methods and Algorithms
  • Advanced Neuroimaging Techniques and Applications
  • Autoimmune Neurological Disorders and Treatments
  • Cerebrovascular and Carotid Artery Diseases
  • Sexual Differentiation and Disorders

University College London
2012-2023

Royal London Hospital
2021-2023

University College London Hospitals NHS Foundation Trust
2020

A*STAR-NUS Clinical Imaging Research Centre
2016-2019

Stanmore College
2018

University College Hospital
2010-2017

National University of Singapore
2016-2017

Agency for Science, Technology and Research
2016-2017

GTx (United States)
2017

UCL Australia
2011

Positron emission tomography (PET) images are degraded by a phenomenon known as the partial volume effect (PVE). Approaches have been developed to reduce PVEs, typically through utilisation of structural information provided other imaging modalities such MRI or CT. These methods, correction (PVC) techniques, PVEs compensating for effects scanner resolution, thereby improving quantitative accuracy. The PETPVC toolbox described in this paper comprises suite both classic and more recent...

10.1088/0031-9155/61/22/7975 article EN Physics in Medicine and Biology 2016-10-25

The spatial normalization of PET amyloid imaging data is challenging because different white and gray matter patterns negative (Aβ-) positive (Aβ+) uptake could lead to systematic bias if a standard method used. In this study, we propose the use an adaptive template registration overcome problem.Data from phase II study (n = 72) were used model deposition with investigational agent (18)F-flutemetamol. Linear regression voxel intensities on standardized value ratio (SUVR) in neocortical...

10.2967/jnumed.112.115006 article EN Journal of Nuclear Medicine 2013-06-05

<h3>Abstract</h3> Here we show that deleting NMNAT2 from cortical glutamatergic neurons (NMNAT2 cKO) results in progressive axonal loss, neuroinflammation, small hippocampi and enlarged ventricles. Interestingly, dramatic neuroinflammation responses were observed around the long-range tracts of cKO neurons. In addition to neurodegenerative-like phenotype, also found absence whisker-representation patterns “barrels” primary somatosensory cortex mice. These observations suggest is required...

10.1136/bmj.1.4667.1393 article EN BMJ 1950-06-17

Patients with idiopathic pulmonary fibrosis (IPF) show increased PET signal at sites of morphological abnormality on high-resolution computed tomography (HRCT). The purpose this investigation was to investigate the normal-appearing lung HRCT in IPF.

10.1007/s00259-013-2514-8 article EN cc-by European Journal of Nuclear Medicine and Molecular Imaging 2013-08-13

Blood-based kinetic analysis of PET data relies on an accurate estimate the arterial plasma input function (PIF). An alternative to invasive measurements from sampling is image-derived (IDIF). However, IDIF provides whole blood radioactivity concentration, rather than required free tracer concentration in plasma. To PIF, we corrected carotid artery with estimates parent fraction (PF) and plasma-to-whole (PWB) ratio obtained five venous samples. We compared combined IDIF+venous approach gold...

10.1016/j.neuroimage.2021.118194 article EN cc-by-nc-nd NeuroImage 2021-05-21

Many partial volume correction approaches make use of anatomical information, readily available in PET/MRI systems but it is not clear what approach best. Seven novel to were evaluated, including several post-reconstruction methods and reconstruction that incorporate information. These compared with an MRI-independent (reblurred van Cittert ) uncorrected data. Monte Carlo PET data generated for activity distributions representing both 18F FDG amyloid tracer uptake. Post-reconstruction...

10.1016/j.nima.2012.07.059 article EN cc-by Nuclear Instruments and Methods in Physics Research Section A Accelerators Spectrometers Detectors and Associated Equipment 2012-08-10

In this paper we propose a segmented magnetic resonance imaging (MRI) prior-based maximum penalized likelihood deconvolution technique for positron emission tomography (PET) images. The model assumes the existence of activity classes that behave like hidden Markov random field (MRF) driven by MRI. We utilize mean approximation to compute MRF. tested our method on both simulated and clinical data (brain PET) compared results with PET images corrected re-blurred Van Cittert (VC) algorithm,...

10.1088/0031-9155/57/20/6681 article EN Physics in Medicine and Biology 2012-10-01
Nicholas I. Paton Meera Gurumurthy Qingshu Lu Francesca Leek Philip Kwan and 95 more Hiromi W.L. Koh James S. Molton Lalaine Mortera Sullian Sy Naval Zamzurina Abu Bakar Yong‐Kek Pang Lionel Lum Tow Keang Lim Gail Brenda Cross Ganesh Lekurwale Hyungwon Choi Veonice Bijin Au John E. Connolly Martin L. Hibberd Justin A. Green Meera Gurumurthy James S. Molton Claire M. Naftalin Benjamin Chaik Meng Yeo Padmasayee Papineni Gail Brenda Cross Philip Kwan Nicholas I. Paton Kristina Rutkute Jun Ling Yan Pang Hyungwon Choi Hiromi Wai Ling Koh David W. Townsend John J. Totman Francesca Leek Benjamin A. Thomas Tow Keang Lim Lionel Lum James S. Molton Gail Brenda Cross Claire M. Naftalin Yan Pang Nicholas I. Paton Grace Xie Qi Xie Bu Duo Yu Yu‐Chen Lin Yin Shan Lim Siang Nee Teoh Roland Jureen Donald Chia Cindy P.Y. Chiu Khor Lih Kin James Thomas Patrick Decourcy Hallinan F. M. H. Tee Eng Chon Boon Qingshu Lu Siok Ting Ng Timothy Peng Lim Quek Siew Hoon Tan Koh Sze Kee S.S. Hsing Tan Choon Ping Lau Suelyn Jane Yeo Ho Shuet Han Ganesh Lekurwale Jie Su Yogesh Pokharkar Rajesh Babu Moorakonda Martin L. Hibberd Paola deSessions Bala Periaswamy Collins Wenhan Chu John E. Connolly Veonice Bijin Au Gerald Chua Lin Lin Wan Hian Augustine Tee Samuel Hong Dato Abdul Razak Zamzurina Abu Bakar Yong‐Kek Pang Nur Azwin Amirah Mohamed Tahir Abdul Jalil Lalaine Mortera Megan Tadeo Frances Tadeo Fria Los Santos Alden Bulicatin Zyra Del Rosario Anthony Geronimo Mark Bernardino Glaiza Erika Guda Yong Peng Lim Seng Gee Tan Har

Abstract Background Interleukin 4 (IL-4), increased in tuberculosis infection, may impair bacterial killing. Blocking IL-4 confers benefit animal models. We evaluated safety and efficacy of pascolizumab (humanized anti–IL-4 monoclonal antibody) as adjunctive treatment. Methods Participants with rifampicin-susceptible pulmonary received a single intravenous infusion or placebo, standard 6-month Pascolizumab dose successive cohorts: (1) nonrandomized 0.05 mg/kg (n = 4); (2) 0.5 (3) randomized...

10.1093/infdis/jiae104 article EN The Journal of Infectious Diseases 2024-03-25

Abstract INTRODUCTION The Centiloid scale aims to harmonize amyloid beta (Aβ) positron emission tomography (PET) measures across different analysis methods. As Centiloids were created using PET/computerized (CT) data and are influenced by scanner differences, we investigated the transformation with from Insight 46 acquired PET/magnetic resonanceimaging (MRI). METHODS We transformed standardized uptake value ratios (SUVRs) 432 florbetapir PET/MRI scans processed whole cerebellum (WC) white...

10.1002/dad2.12434 article EN cc-by Alzheimer s & Dementia Diagnosis Assessment & Disease Monitoring 2023-04-01

MARTIN, EDWARD; THOMAS, BENJAMIN A.; MOORHEAD, STIRLING W.; PILCHER, LEWIS S. Author Information

10.1097/00000658-191801000-00016 article EN Annals of Surgery 1918-01-01

10.1016/j.nima.2010.12.106 article EN Nuclear Instruments and Methods in Physics Research Section A Accelerators Spectrometers Detectors and Associated Equipment 2010-12-22

PET/computed tomography (CT) has been shown to detect lesions in patients with pulmonary tuberculosis (PTB) and may be useful for assessing PTB disease clinical research studies. However, radiation dose is of concern individuals an underlying curable disease. This study aimed determine whether PET/MR equivalent PET/CT PTB.Ten microbiologically confirmed were recruited. Patients received 129.0±4.1 MBq fluorine-18-fluorodeoxyglucose. Five the 10 underwent a scan, followed by PET/CT. The...

10.1097/mnm.0000000000000743 article EN Nuclear Medicine Communications 2017-09-06

Huxley has said, "The man of science learned to believe in justification, not by faith, but verification." With this mind, throughout the past nine months, I have been engaged a study practical utility opsonic index as factor diagnosis, prognosis and therapeusis disease. Lest my attitude on question be misinterpreted, desire primarily state that no reason doubt, and, contrary, entertain implicit faith theory opsonins; practicability medicine, experiments occasioned gravest skepticism, if...

10.1001/jama.1907.25320150015001d article EN JAMA 1907-10-12

Two years ago in a contribution<sup>1</sup>read before the Philadelphia County Medical Society on subject of opsonins, I made following statements: 1. "In heralded unlimited field therapy, where opsonic index is ordained to play star rôle, its utility seems destined pass into oblivion, not only because inconstancy agreement with clinical symptomatology, but especially impracticability." 2. "Although my experience thus far artificial auto-inoculations has been most gratifying and results...

10.1001/jama.1910.92550310001001g article EN Journal of the American Medical Association 1910-01-29

Abstract In N -methyl-D-aspartate receptor (NMDAR) antibody encephalitis, NMDAR-autoantibodies are hypothesised to cause prominent neuropsychiatric symptoms by internalizing NMDARs. However, supporting evidence comes chiefly from in vitro and rodent data with scant direct affected humans. Here, we used vivo positron emission tomography (PET) [ 18 F]GE-179 show a mean 30% reduction of the density open, activated NMDARs grey matter persistently NMDAR-autoantibody seropositive patients...

10.1101/2021.12.04.21267226 preprint EN cc-by-nd medRxiv (Cold Spring Harbor Laboratory) 2021-12-05

The understanding of early events following TB exposure is limited by traditional tests that rely on detection an immune response to infection, which delayed, or imaging with low sensitivity for disease. We investigated evidence lung abnormalities in heavily exposed contacts using PET/MRI.30 household 20 index patients underwent clinical assessment, IGRA testing, chest x-ray and PET/MRI scan 18-F-FDG. MRI images were examined a radiology/nuclear medicine dual-qualified physician standardised...

10.1186/s12879-019-3705-0 article EN cc-by BMC Infectious Diseases 2019-01-24

Single photon emission tomography (SPECT) is widely used in clinical practice for a large number of diagnostic applications. However, different hospitals might use scanners containing hardware and software technologies, therefore making reproducibility results hard task. The aim this work to establish the basis tool able include scanner models facilitate inter-comparison activity measurements across institutions. We open source tomographic image reconstruction (STIR) implemented...

10.1109/nss/mic42101.2019.9059665 article EN 2021 IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC) 2019-10-01

The combination of positron emission tomography (PET) with magnetic resonance (MR) imaging opens the way to more accurate diagnosis and improved patient management. At present, data acquired by PET MR scanners are essentially processed separately, search for ways improve accuracy tomographic reconstruction via synergy two techniques is an active area research. aim collaborative computational project on (CCP-PETMR), supported UK engineering physical sciences research council (EPSRC),...

10.1109/nssmic.2017.8532815 article EN 2021 IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC) 2017-10-01
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