Thiseas C. Lamnidis

ORCID: 0000-0003-4485-8570
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About
Contact & Profiles
Research Areas
  • Forensic and Genetic Research
  • Forensic Anthropology and Bioarchaeology Studies
  • Archaeology and ancient environmental studies
  • Race, Genetics, and Society
  • Genetic diversity and population structure
  • Genomics and Phylogenetic Studies
  • Metabolomics and Mass Spectrometry Studies
  • Environmental DNA in Biodiversity Studies
  • Indigenous Studies and Ecology
  • Korean Peninsula Historical and Political Studies
  • HIV Research and Treatment
  • Image Processing and 3D Reconstruction
  • vaccines and immunoinformatics approaches
  • Pacific and Southeast Asian Studies
  • Geology and Paleoclimatology Research
  • Maritime and Coastal Archaeology
  • Nutrition, Genetics, and Disease
  • Yersinia bacterium, plague, ectoparasites research
  • Malaria Research and Control
  • Amazonian Archaeology and Ethnohistory

Max Planck Institute for Evolutionary Anthropology
2021-2024

Max Planck Institute for the Science of Human History
2017-2021

Max Planck Society
2020

Highlights•Genome-wide analysis of 49 Central and South Americans up to ∼11,000 years old•Two previously unknown genetic exchanges between North America•Distinct link a Clovis culture-associated genome the oldest Americans•Continent-wide replacement Clovis-associated ancestry beginning at least 9,000 agoSummaryWe report genome-wide ancient DNA from individuals forming four parallel time transects in Belize, Brazil, Andes, Southern Cone, each dating ∼9,000 ago. The common ancestral population...

10.1016/j.cell.2018.10.027 article EN cc-by Cell 2018-11-01

European population history has been shaped by migrations of people, and their subsequent admixture. Recently, ancient DNA brought new insights into migration events linked to the advent agriculture, possibly spread Indo-European languages. However, little is known about north-eastern Europe, in particular populations speaking Uralic languages, such as Finns Saami. Here we analyse genomic data from 11 individuals Finland north-western Russia. We show that genetic makeup northern Europe was...

10.1038/s41467-018-07483-5 article EN cc-by Nature Communications 2018-11-21

The broadening utilisation of ancient DNA to address archaeological, palaeontological, and biological questions is resulting in a rising diversity the size laboratories scale analyses being performed. In context this heterogeneous landscape, we present an advanced, entirely redesigned extended version EAGER pipeline for analysis genomic data. This Nextflow aims three main themes: accessibility adaptability different computing configurations, reproducibility ensure robust analytical...

10.7717/peerj.10947 article EN cc-by PeerJ 2021-03-16
Megan Michel Eirini Skourtanioti Federica Pierini Evelyn K. Guevara Angela Mötsch and 89 more Arthur Kocher Rodrigo Barquera Raffaela A. Bianco Selina Carlhoff Lorenza Coppola Bove Suzanne Freilich Karen Giffin Taylor R. Hermes Alina Hiß Florian Knolle Elizabeth A. Nelson Gunnar U. Neumann Luka Papac Sandra Penske Adam B. Rohrlach Nada Salem Lena Semerau Vanessa Villalba‐Mouco Isabelle Abadie Mark Aldenderfer Jessica Beckett Matthew Brown Franco Campus Cheng-hwa Tsang María Cruz Berrocal Ladislav Damašek Kellie Sara Duffett Carlson Raphaël Durand Michal Ernée Cristinel Fântăneanu H. Frenzel Gabriel García Atiénzar Sonia Guillén Ellen Hsieh Maciej Karwowski David J. Kelvin Nikki Kelvin Aleksandr Khokhlov Rebecca Kinaston Arkadii Korolev Kim-Louise Krettek Mario Küßner Luca Lai Cory Look Kerttu Majander Kirsten Mandl Vittorio Mazzarello Michael McCormick María Paz de Miguel Ibáñez Reg Murphy Rita E. Németh Kerkko Nordqvist Friederike Novotny Martin Obenaus Lauro Olmo-Enciso Päivi Onkamo Jörg Orschiedt Valerii Patrushev Sanni Peltola Alejandro Romero Salvatore Rubino Antti Sajantila Domingo C. Salazar‐García Elena Serrano Shapulat Shaydullaev Emanuela Sias Mario Šlaus Ladislav Stančo Treena Swanston Maria Teschler‐Nicola Frédérique Valentin Katrien Van de Vijver Tamara L. Varney Alfonso Vigil-Escalera Guirado Christopher K. Waters Estella Weiss‐Krejci Eduard Winter Thiseas C. Lamnidis Kay Prüfer Kathrin Nägele Maria A. Spyrou Stephan Schiffels Philipp W. Stockhammer Wolfgang Haak Cosimo Posth Christina Warinner Kirsten I. Bos Alexander Herbig Johannes Krause

Malaria-causing protozoa of the genus Plasmodium have exerted one strongest selective pressures on human genome, and resistance alleles provide biomolecular footprints that outline historical reach these species

10.1038/s41586-024-07546-2 article EN cc-by Nature 2024-06-12

Genetic studies of Neolithic and Bronze Age skeletons from Europe have provided evidence for strong population genetic changes at the beginning end period. To further understand implications these in Southern Central Europe, we analyze 96 ancient genomes Switzerland, Germany, Alsace region France, covering Middle/Late to Early Age. Similar previously described other parts early 3rd millennium BCE, detect an arrival ancestry related Late pastoralists Pontic-Caspian steppe Switzerland as...

10.1038/s41467-020-15560-x article EN cc-by Nature Communications 2020-04-20

A complex dispersal into the Caribbean The settlement of and genetic relationships among pre-European people remain a mystery. After examining 93 ancient genomes dating to range from about 3200 400 years ago, Nägele et al. suggest that at least three separate colonization events, including previously unknown wave, were connected radiation events in North America. two more lineages coexisted Cuba but fully genetically, with later movement region third group South study not only informs on...

10.1126/science.aba8697 article EN Science 2020-06-04

The early Iron Age (800 to 450 BCE) in France, Germany and Switzerland, known as the 'West-Hallstattkreis', stands out featuring earliest evidence for supra-regional organization north of Alps. Often referred 'early Celtic', suggesting tentative connections later cultural phenomena, its societal population structure remain enigmatic. Here we present genomic isotope data from 31 individuals this context southern Germany, dating between 616 200 BCE. We identify multiple biologically related...

10.1038/s41562-024-01888-7 article EN cc-by Nature Human Behaviour 2024-06-03

The study of ancient human genomes, archaeo- or palaeogenetics, has accelerated in the last ten years, with now thousands new genomes being released each year. Operating at interface genetics, anthro-pology and archaeology, this data includes features from all three fields, including rich meta- context-data, for example regarding spatiotemporal provenience. While archives standards genetic sequencing al-ready exist, no such infrastructure exists combined meta-data that could ensure FAIR...

10.7554/elife.98317.1 preprint EN 2024-06-19

Abstract Paleo-Eskimos were the first people to settle vast regions of American Arctic around 5,000 years ago, and subsequently joined largely displaced 1,000 ago by ancestors present-day Inuit Yupik. The genetic relationship between Native populations remains uncertain. We analyze ancient genome-wide data from Americas Siberia, including new Alaskan Iñupiat West Siberian populations, DNA Aleutian Islanders, northern Athabaskans, a 4,250-year-old individual Chukotkan Ust'-Belaya culture....

10.1101/203018 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2017-10-13

Tiwanaku civilization flourished in the Lake Titicaca basin between 500 and 1000 CE at its apogee influenced wide areas across southern Andes. Despite a considerable amount of archaeological data, little is known about population. We analyzed 17 low-coverage genomes from individuals dated 300 1500 demonstrated genetic continuity throughout this period, which indicates that substantial cultural political changes region were not accompanied by large-scale population movements. Conversely,...

10.1126/sciadv.abg7261 article EN cc-by-nc Science Advances 2021-09-24

1 Abstract The study of ancient human genomes, archaeo- or palaeogenetics, has accelerated in the last ten years, with now thousands new genomes being released each year. Operating at interface genetics, anthro-pology and archaeology, this data includes features from all three fields, including rich meta- context-data, for example regarding spatiotemporal provenience. While archives standards genetic sequencing al-ready exist, no such infrastructure exists combined meta-data that could...

10.1101/2024.04.12.589180 preprint EN cc-by bioRxiv (Cold Spring Harbor Laboratory) 2024-04-14

Abstract Archaeological and archaeogenetic studies have highlighted the pivotal role of Caucasus region throughout prehistory, serving as a central hub for cultural, technological, linguistic innovations. However, despite its dynamic history, critical area between Greater Lesser mountain ranges, mainly corresponding to modern-day Georgia, has received limited attention. Here, we generated an ancient DNA time transect consisting 219 individuals with genome-wide data from 47 sites in this...

10.1101/2024.06.11.597880 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2024-06-13

Abstract The broadening utilisation of ancient DNA to address archaeological, palaeontological, and biological questions is resulting in a rising diversity the size laboratories scale analyses being performed. In context this heterogeneous landscape, we present nf-core/eager, an advanced entirely redesigned extended version EAGER pipeline for analysis genomic data. This Nextflow aims three main themes: accessibility adaptability different computing configurations, reproducibility ensure...

10.1101/2020.06.11.145615 preprint EN cc-by bioRxiv (Cold Spring Harbor Laboratory) 2020-06-12

Abstract European history has been shaped by migrations of people, and their subsequent admixture. Recently, evidence from ancient DNA brought new insights into migration events that could be linked to the advent agriculture, possibly spread Indo-European languages. However, little is known so far about population north-eastern Europe, in particular populations speaking Uralic languages, such as Finns Saami. Here we analyse genomic data 11 individuals Finland Northwest Russia. We show...

10.1101/285437 preprint EN cc-by bioRxiv (Cold Spring Harbor Laboratory) 2018-03-22

The study of ancient human genomes, archaeo- or palaeogenetics, has accelerated in the last ten years, with now thousands new genomes being released each year. Operating at interface genetics, anthro-pology and archaeology, this data includes features from all three fields, including rich meta- context-data, for example regarding spatiotemporal provenience. While archives standards genetic sequencing al-ready exist, no such infrastructure exists combined meta-data that could ensure FAIR...

10.7554/elife.98317 preprint EN 2024-06-19
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