Aleksandr Khokhlov

ORCID: 0000-0003-0442-9616
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Research Areas
  • Forensic and Genetic Research
  • Forensic Anthropology and Bioarchaeology Studies
  • Archaeology and ancient environmental studies
  • Ancient and Medieval Archaeology Studies
  • Genetic diversity and population structure
  • Marine and environmental studies
  • Paleopathology and ancient diseases
  • Yersinia bacterium, plague, ectoparasites research
  • Race, Genetics, and Society
  • HIV Research and Treatment
  • Cultural, Linguistic, Economic Studies
  • Hepatitis B Virus Studies
  • Historical and Archaeological Studies
  • Folklore, Mythology, and Literature Studies
  • Engineering and Environmental Studies
  • Dental Trauma and Treatments
  • Educational Methods and Teacher Development
  • Salmonella and Campylobacter epidemiology
  • Genetic and phenotypic traits in livestock
  • dental development and anomalies
  • Bacillus and Francisella bacterial research
  • Psycholinguistics and Behavioral Studies
  • Rabies epidemiology and control
  • vaccines and immunoinformatics approaches
  • Physical Education and Training Studies

Samara State University of Social Sciences and Education
2016-2025

Institute of Anthropology and Ethnography
2016-2024

Russian Academy of Sciences
2016-2024

Kazan Federal University
2023-2024

Romanian Academy
2023

University of Bucharest
2023

Pennsylvania State University
2023

Institute of Archaeology
2018

Samara State Technical University
2016

National Research Tomsk State University
2016

Vagheesh M. Narasimhan Nick Patterson Priya Moorjani Nadin Rohland Rebecca Bernardos and 95 more Swapan Mallick Iosif Lazaridis Nathan Nakatsuka Ïñigo Olalde Mark Lipson Alexander M. Kim Luca M. Olivieri Alfredo Coppa Massimo Vidale J. P. Mallory Vyacheslav Moiseyev Еgor Kitov Janet Monge Nicole Adamski Neel Alex Nasreen Broomandkhoshbacht Francesca Candilio Kimberly Callan Olivia Cheronet Brendan J. Culleton Matthew Ferry Daniel Fernandes Suzanne Freilich Beatriz Gamarra Daniel Gaudio Mateja Hajdinjak Éadaoin Harney Thomas K. Harper Denise Keating Ann Marie Lawson Matthew Mah Kirsten Mandl Megan Michel Mario Novak Jonas Oppenheimer Niraj Rai Kendra Sirak Viviane Slon Kristin Stewardson Fatma Zalzala Zhao Zhang Gaziz Akhatov A.N. Bagashev Alessandra Bagnera Bauryzhan Baitanayev Julio Bendezú-Sarmiento Arman A. Bissembaev Gian Luca Bonora T. T. Chargynov Т. А. Чикишева Petr K. Dashkovskiy А. П. Деревянко Miroslav Dobeš Katerina Douka Надежда Дубова Meiram N. Duisengali D.N. Enshin Andrey Epimakhov Alexey V. Fribus Dorian Q. Fuller Alexander Goryachev Andrey Gromov С.П. Грушин Bryan Hanks Margaret A. Judd Erlan Kazizov Aleksandr Khokhlov Aleksander P. Krygin Elena Kupriyanova Pavel Kuznetsov Donata Luiselli Farhod Maksudov Aslan M. Mamedov Talgat B. Mamirov Christopher Meiklejohn Deborah C. Merrett Roberto Micheli Oleg Dmitrievich Mochalov Samariddin Mustafokulov Ayushi Nayak Davide Pettener Richard Potts Dmitry Razhev Marina P. Rykun Stefania Sarno Tatyana M. Savenkova Kulyan Sikhymbaeva Sergey Slepchenko Oroz A. Soltobaev N. F. Stepanova Svetlana V Svyatko Kubatbek Tabaldiev Maria Teschler‐Nicola А. Tishkin В. В. Ткачев

Ancient human movements through Asia DNA has allowed us to begin tracing the history of across globe. Narasimhan et al. identify a complex pattern migrations and admixture events in South Central by performing genetic analysis more than 500 people who lived over past 8000 years (see Perspective Schaefer Shapiro). They establish key phases population prehistory Eurasia, including spread farming peoples from Near East, with both westward eastward. The known as Yamnaya Bronze Age also moved...

10.1126/science.aat7487 article EN Science 2019-09-05

Abstract The origin of Yersinia pestis and the early stages its evolution are fundamental subjects investigation given high virulence mortality that resulted from past pandemics. Although earliest evidence Y. infections in humans has been identified Late Neolithic/Bronze Age Eurasia (LNBA 5000–3500y BP), these strains lack key genetic components required for flea adaptation, thus making their mode transmission disease presentation unclear. Here, we reconstruct ancient genomes individuals...

10.1038/s41467-018-04550-9 article EN cc-by Nature Communications 2018-06-04
Iosif Lazaridis Nick Patterson David W. Anthony Leonid Vyazov Romain Fournier and 89 more Harald Ringbauer Ïñigo Olalde Aleksandr Khokhlov Еgor Kitov Natalia Shishlina Sorin Ailincăi Danila S. Agapov Sergey A. Agapov Elena Batieva Baitanayev Bauyrzhan Zsolt Bereczki Alexandra Buzhilova Piya Changmai Andrey A. Chizhevsky Ion Ciobanu Mihai Constantinescu Marietta Csányi János Dani Петр Константинович Дашковский Sándor Évinger Anatoly Faifert Pavel Flegontov Alin Frînculeasa Mădălina N. Frînculeasa Tamás Hajdu Thomas Higham Paweł Jarosz Pavol Jelínek Valeri Khartanovich Eduard N. Kirginekov Viktória Kiss Alexandera Kitova Alexeiy V. Kiyashko Jovan Koledin Arkady Ivanovich Korolev П. А. Косинцев Gabriella Kulcsár Pavel Kuznetsov R. A. Magomedov Aslan M. Mamedov Eszter Melis Vyacheslav Moiseyev Erika Molnár Janet Monge Octav Negrea Н. А. Николаева Mario Novak Maria A. Ochir-Goryaeva György Pálfi Sergiu Popovici Marina P. Rykun Tatyana M. Savenkova Vladimir P. Semibratov N. Seregin Alena Šefčáková Raikhan S. Mussayeva Irina Shingiray Vladimir N. Shirokov Angela Simalcsik Kendra Sirak K.N. Solodovnikov Judit Tárnoki А. Tishkin Viktor Trifonov Sergey Vasilyev Ali Akbari Esther S. Brielle Kimberly Callan Francesca Candilio Olivia Cheronet Elizabeth Curtis Olga Flegontova Lora Iliev Aisling Kearns Denise Keating Ann Marie Lawson Matthew Mah Adam Micco Megan Michel Jonas Oppenheimer Lijun Qiu J. Noah Workman Fatma Zalzala Anna Szécsényi‐Nagy Pier Francesco Palamara Swapan Mallick Nadin Rohland Ron Pinhasi David Reich

10.1038/s41586-024-08531-5 article EN Nature 2025-02-05

Abstract During the 1 st millennium before Common Era (BCE), nomadic tribes associated with Iron Age Scythian culture spread over Eurasian Steppe, covering a territory of more than 3,500 km in breadth. To understand demographic processes behind culture, we analysed genomic data from eight individuals and mitochondrial dataset 96 originating eastern western parts Steppe. Genomic inference reveals that Scythians east west steppe zone can best be described as mixture Yamnaya-related ancestry an...

10.1038/ncomms14615 article EN cc-by Nature Communications 2017-03-03
Arthur Kocher Luka Papac Rodrigo Barquera Felix M. Key Maria A. Spyrou and 95 more Ron Hübler Adam B. Rohrlach Franziska Aron Raphaela Stahl Antje Wissgott Florian van Bömmel Maria Pfefferkorn Alissa Mittnik Vanessa Villalba‐Mouco Gunnar U. Neumann Maïté Rivollat Marieke S. van de Loosdrecht Kerttu Majander Rezeda I. Tukhbatova Lyazzat Musralina Ayshin Ghalichi Sandra Penske Susanna Sabin Megan Michel Joscha Gretzinger Elizabeth A. Nelson Tiago Ferraz Kathrin Nägele Cody Parker Marcel Keller Evelyn K. Guevara Michal Feldman Stefanie Eisenmann Eirini Skourtanioti Karen Giffin Guido Alberto Gnecchi‐Ruscone Susanne Friederich Vittoria Schimmenti Valery Khartanovich Marina K. Karapetian Mikhail S. Chaplygin Vladimir V. Kufterin Aleksandr Khokhlov Andrey A. Chizhevsky Dmitry A. Stashenkov Anna F. Kochkina Cristina Tejedor Rodríguez Íñigo García-Martínez de Lagrán Héctor Arcusa-Magallón Rafael Garrido Peña José I. Royo-Guillén Jan Nováček Stéphane Rottier Sacha Kacki Sylvie Saintot Elena Kaverzneva Andrej B. Belinskiy Petr Velemínský Petr Limburský Michal Kostka Louise Loe Elizabeth Popescu Rachel Clarke Alice Lyons Richard Mortimer Antti Sajantila Yadira Chinique de Armas Silvia Teresita Hernández Godoy Diana Iraíz Hernández-Zaragoza Jessica Pearson Didier Binder Philippe Lefranc А. Р. Канторович Vladimir Е. Maslov Luca Lai Magdalena Żołędziewska Jessica F. Beckett Michaela Langová Alžběta Danielisová Tara Ingman Gabriel García Atiénzar María Paz de Miguel Ibáñez Alejandro Romero Alessandra Sperduti Sophie Beckett Susannah J. Salter Emma D. Zilivinskaya Dmitry V. Vasil’ev Kristin von Heyking Richard L. Burger Lucy C. Salazar Luc Amkreutz Masnav Navruzbekov Eva Rosenstock Carmen Alonso Fernández Vladimir Slavchev Alexey Kalmykov Biaslan Ch. Atabiev Elena Batieva Micaela Álvarez Calmet

Ancient DNA traces the history of hepatitis B Hepatitis virus (HBV) infections represent a worldwide human health concern. To study this pathogen, Kocher et al . identified 137 remains with detectable levels dating between 400 and 10,000 years ago. Sequencing analyses these ancient viruses suggested common ancestor 12,000 20,000 There is no evidence indicating that HBV was present in earliest humans as they spread out Africa; however, likely populations before farming. Furthermore, Americas...

10.1126/science.abi5658 article EN Science 2021-10-08

Abstract During the Early Bronze Age, populations of western Eurasian steppe expanded across an immense area northern Eurasia. Combined archaeological and genetic evidence supports widespread Age population movements out Pontic–Caspian that resulted in gene flow vast distances, linking Yamnaya pastoralists Scandinavia with pastoral (known as Afanasievo) far to east Altai Mountains 1,2 Mongolia 3 . Although some models hold this expansion was outcome a newly mobile economy characterized by...

10.1038/s41586-021-03798-4 article EN cc-by Nature 2021-09-15

Abstract Archaeological and archaeogenetic evidence points to the Pontic–Caspian steppe zone between Caucasus Black Sea as crucible from which earliest pastoralist societies arose spread, ultimately influencing populations Europe Inner Asia. However, little is known about their economic foundations factors that may have contributed extensive mobility. Here, we investigate dietary proteins within dental calculus proteomes of 45 individuals spanning Neolithic Greco-Roman periods in Steppe...

10.1038/s41559-022-01701-6 article EN cc-by Nature Ecology & Evolution 2022-04-07
Megan Michel Eirini Skourtanioti Federica Pierini Evelyn K. Guevara Angela Mötsch and 89 more Arthur Kocher Rodrigo Barquera Raffaela A. Bianco Selina Carlhoff Lorenza Coppola Bove Suzanne Freilich Karen Giffin Taylor R. Hermes Alina Hiß Florian Knolle Elizabeth A. Nelson Gunnar U. Neumann Luka Papac Sandra Penske Adam B. Rohrlach Nada Salem Lena Semerau Vanessa Villalba‐Mouco Isabelle Abadie Mark Aldenderfer Jessica Beckett Matthew Brown Franco Campus Cheng-hwa Tsang María Cruz Berrocal Ladislav Damašek Kellie Sara Duffett Carlson Raphaël Durand Michal Ernée Cristinel Fântăneanu H. Frenzel Gabriel García Atiénzar Sonia Guillén Ellen Hsieh Maciej Karwowski David J. Kelvin Nikki Kelvin Aleksandr Khokhlov Rebecca Kinaston Arkadii Korolev Kim-Louise Krettek Mario Küßner Luca Lai Cory Look Kerttu Majander Kirsten Mandl Vittorio Mazzarello Michael McCormick María Paz de Miguel Ibáñez Reg Murphy Rita E. Németh Kerkko Nordqvist Friederike Novotny Martin Obenaus Lauro Olmo-Enciso Päivi Onkamo Jörg Orschiedt Valerii Patrushev Sanni Peltola Alejandro Romero Salvatore Rubino Antti Sajantila Domingo C. Salazar‐García Elena Serrano Shapulat Shaydullaev Emanuela Sias Mario Šlaus Ladislav Stančo Treena Swanston Maria Teschler‐Nicola Frédérique Valentin Katrien Van de Vijver Tamara L. Varney Alfonso Vigil-Escalera Guirado Christopher K. Waters Estella Weiss‐Krejci Eduard Winter Thiseas C. Lamnidis Kay Prüfer Kathrin Nägele Maria A. Spyrou Stephan Schiffels Philipp W. Stockhammer Wolfgang Haak Cosimo Posth Christina Warinner Kirsten I. Bos Alexander Herbig Johannes Krause

Malaria-causing protozoa of the genus Plasmodium have exerted one strongest selective pressures on human genome, and resistance alleles provide biomolecular footprints that outline historical reach these species

10.1038/s41586-024-07546-2 article EN cc-by Nature 2024-06-12
Vagheesh M. Narasimhan Nick Patterson Priya Moorjani Iosif Lazaridis Mark Lipson and 87 more Swapan Mallick Nadin Rohland Rebecca Bernardos Alexander M. Kim Nathan Nakatsuka Ïñigo Olalde Alfredo Coppa J. P. Mallory Vyacheslav Moiseyev Janet Monge Luca M. Olivieri Nicole Adamski Nasreen Broomandkhoshbacht Francesca Candilio Olivia Cheronet Brendan J. Culleton Matthew Ferry Daniel Fernandes Beatriz Gamarra Daniel Gaudio Mateja Hajdinjak Éadaoin Harney Thomas K. Harper Denise Keating Ann Marie Lawson Megan Michel Mario Novak Jonas Oppenheimer Niraj Rai Kendra Sirak Viviane Slon Kristin Stewardson Zhao Zhang Gaziz Akhatov A.N. Bagashev Bauryzhan Baitanayev Gian Luca Bonora Т. А. Чикишева А. П. Деревянко Enshin Dmitry Katerina Douka Надежда Дубова Andrey Epimakhov Suzanne Freilich Dorian Q. Fuller Alexander Goryachev Andrey Gromov Bryan Hanks Margaret A. Judd Erlan Kazizov Aleksandr Khokhlov Еgor Kitov Elena Kupriyanova Pavel Kuznetsov Donata Luiselli Farhod Maksudov Christopher Meiklejohn Deborah C. Merrett Roberto Micheli Oleg Dmitrievich Mochalov Zahir Muhammed Samariddin Mustafokulov Ayushi Nayak Rykun M. Petrovna Davide Pettener Richard Potts Dmitry Razhev Stefania Sarno Kulyan Sikhymbaeva Sergey Slepchenko N. F. Stepanova Svetlana V Svyatko Sergey Vasilyev Massimo Vidale Dmitriy Voyakin Antonina Yermolayeva А. В. Зубова Vasant Shinde Carles Lalueza‐Fox Matthias Meyer David W. Anthony Nicole Boivin Kumarasamy Thangaraj Douglas J. Kennett Michael D. Frachetti Ron Pinhasi David Reich

Abstract The genetic formation of Central and South Asian populations has been unclear because an absence ancient DNA. To address this gap, we generated genome-wide data from 362 individuals, including the first eastern Iran, Turan (Uzbekistan, Turkmenistan, Tajikistan), Bronze Age Kazakhstan, Asia. Our reveal a complex set sources that ultimately combined to form ancestry Asians today. We document southward spread Eurasian Steppe, correlating with archaeologically known expansion...

10.1101/292581 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2018-03-31
Iosif Lazaridis Nick Patterson David W. Anthony Leonid Vyazov Romain Fournier and 89 more Harald Ringbauer Ïñigo Olalde Aleksandr Khokhlov Еgor Kitov Natalia Shishlina Sorin Ailincăi Danila S. Agapov Sergey A. Agapov Elena Batieva Baitanayev Bauyrzhan Zsolt Bereczki Alexandra Buzhilova Piya Changmai Andrey A. Chizhevsky Ion Ciobanu Mihai Constantinescu Marietta Csányi János Dani Peter K. Dashkovskiy Sándor Évinger Anatoly Faifert Pavel Flegontov Alin Frînculeasa Mădălina N. Frînculeasa Tamás Hajdu Thomas Higham Paweł Jarosz Pavol Jelínek Valeri Khartanovich Eduard N. Kirginekov Viktória Kiss Alexandera Kitova Alexeiy V. Kiyashko Jovan Koledin Arkady Ivanovich Korolev П. А. Косинцев Gabriella Kulcsár Pavel Kuznetsov R. A. Magomedov Mamedov Aslan Malikovich Eszter Melis Vyacheslav Moiseyev Erika Molnár Janet Monge Octav Negrea Н. А. Николаева Mario Novak Maria A. Ochir-Goryaeva György Pálfi Sergiu Popovici Marina P. Rykun Tatyana M. Savenkova Vladimir P. Semibratov N. Seregin Alena Šefčáková Mussayeva Raikhan Serikovna Irina Shingiray Vladimir N. Shirokov Angela Simalcsik Kendra Sirak K.N. Solodovnikov Judit Tárnoki Alexey A. Tishkin Viktov Trifonov Sergey Vasilyev Ali Akbari Esther S. Brielle Kimberly Callan Francesca Candilio Olivia Cheronet Elizabeth Curtis Olga Flegontova Lora Iliev Aisling Kearns Denise Keating Ann Marie Lawson Matthew Mah Adam Micco Megan Michel Jonas Oppenheimer Lijun Qiu J. Noah Workman Fatma Zalzala Anna Szécsényi‐Nagy Pier Francesco Palamara Swapan Mallick Nadin Rohland Ron Pinhasi David Reich

The Yamnaya archaeological complex appeared around 3300BCE across the steppes north of Black and Caspian Seas, by 3000BCE reached its maximal extent from Hungary in west to Kazakhstan east. To localize ancestral geographical origins among diverse Eneolithic people that preceded them, we studied ancient DNA data 428 individuals which 299 are reported for first time, demonstrating three previously unknown genetic clines. First, a “Caucasus-Lower Volga” (CLV) Cline suffused with Caucasus...

10.1101/2024.04.17.589597 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2024-04-18

Abstract The genetically attested migrations of the third millennium BC have made origins and nature Yamnaya culture a question broad relevance across northern Eurasia. But none key archaeological sites most important for understanding evolution is published in western languages. These include fifth-millennium Khvalynsk cemetery middle Volga steppes. When first part Eneolithic (Khvalynsk I) was discovered 1977–1979, graves displayed many material ritual traits that were quickly recognized as...

10.1515/pz-2022-2034 article EN Praehistorische Zeitschrift 2022-03-22

Abstract Most of the early Hungarian tribes originated from Volga-Kama and South-Ural regions, where they were composed a mixed population based on historical, philological archaeological data. We present here uniparental genetic makeup mediaeval era these regions that served as melting pot for ethnic groups with different linguistic historical backgrounds. Representing diverse cultural contexts, new data originate ancient proto-Ob-Ugric people Western Siberia (6th–13th century),...

10.1093/hmg/ddac106 article EN cc-by-nc Human Molecular Genetics 2022-05-05

Abstract The North Eurasian forest and forest-steppe zones have sustained millennia of sociocultural connections among northern peoples. We present genome-wide ancient DNA data for 181 individuals from this region spanning the Mesolithic, Neolithic Bronze Age. find that Early to Mid-Holocene hunter-gatherer populations across southern forest-steppes Northern Eurasia can be characterized by a continuous gradient ancestry remained stable millennia, ranging fully West in Baltic East Asian...

10.1101/2023.10.01.560332 preprint EN cc-by-nc bioRxiv (Cold Spring Harbor Laboratory) 2023-10-02

The arrival of farming in Europe around 8,500 years ago necessitated adaptation to new environments, pathogens, diets, and social organizations. While indirect evidence can be detected patterns genetic variation present-day people, ancient DNA makes it possible witness selection directly by analyzing samples from populations before, during after events. Here we report the first genome-wide scan for using DNA, capitalizing on largest dataset yet assembled: 230 West Eurasians dating between...

10.1101/016477 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2015-03-14

We generated genome-wide data from 69 Europeans who lived between 8,000-3,000 years ago by enriching ancient DNA libraries for a target set of almost four hundred thousand polymorphisms. Enrichment these positions decreases the sequencing required analysis median around 250-fold, allowing us to study an order magnitude more individuals than previous studies and obtain new insights about past. show that populations western far eastern Europe followed opposite trajectories 8,000-5,000 ago. At...

10.1101/013433 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2015-02-10

Abstract The invasion of Russia by the Napoleonic Grande Armée was a complete disaster. French army decimated during retreat from Russia. Thousands victims were buried in mass graves located near several cities retreat. One these discovered centre Kaliningrad (formerly Königsberg), presently most occidental oblast Russian Federation. Some skeletons revealed evidence violence related traumatic injuries. Among them, skeleton C2 belonged to young male, who had suffered serious injury lower...

10.1002/oa.2728 article EN International Journal of Osteoarchaeology 2018-12-07
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