Alexandra Zahradnı́ková

ORCID: 0000-0002-7296-9617
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About
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Research Areas
  • Ion channel regulation and function
  • Cardiac electrophysiology and arrhythmias
  • Neuroscience and Neural Engineering
  • Neuroscience and Neuropharmacology Research
  • Receptor Mechanisms and Signaling
  • Nicotinic Acetylcholine Receptors Study
  • Cardiomyopathy and Myosin Studies
  • Mass Spectrometry Techniques and Applications
  • Spectroscopy and Chemometric Analyses
  • Nitric Oxide and Endothelin Effects
  • Calcium signaling and nucleotide metabolism
  • Lipid Membrane Structure and Behavior
  • Cell Image Analysis Techniques
  • Ion Transport and Channel Regulation
  • Spectroscopy Techniques in Biomedical and Chemical Research
  • Ion Channels and Receptors
  • Electrochemical Analysis and Applications
  • Cellular transport and secretion
  • Genetics and Neurodevelopmental Disorders
  • Cardiac Ischemia and Reperfusion
  • Genetics, Bioinformatics, and Biomedical Research
  • Computational Drug Discovery Methods
  • Cardiovascular and exercise physiology
  • Protein Kinase Regulation and GTPase Signaling
  • thermodynamics and calorimetric analyses

Slovak Academy of Sciences
2015-2024

Institute of Experimental Endocrinology of the Slovak Academy of Sciences
2019-2024

Biomedical Research Center of the Slovak Academy of Sciences
2022

Centre of Biosciences of the Slovak Academy of Sciences
2008-2020

Bioscience (Slovakia)
2018

Institute of Molecular Biology of the Slovak Academy of Sciences
2010-2017

Czech Academy of Sciences, Institute of Physiology
2003

Czech Academy of Sciences
2003

Augusta University
1995-1998

The University of Texas Medical Branch at Galveston
1993

NO donors were found to reduce the rate of Ca2+ release from isolated skeletal muscle sarcoplasmic reticulum (SR) and open probability single ryanodine receptor channels (RyRCs) in planar lipid bilayers, these effects prevented by quencher hemoglobin reversed 2-mercaptoethanol. assessed homogenates was also reduced that generated situ L-arginine endogenous, nitro-L-arginine methylester-sensitive NO-synthase. The effect on RyRC might explain NO-induced depression contractile force striated...

10.1016/0014-5793(96)00003-8 article EN FEBS Letters 1996-02-12

Rapid, sequence-specific DNA detection is essential for applications in medical diagnostics and genetic screening. Electrical biosensors that use immobilized nucleic acids are especially promising these because of their potential miniaturization automation. Current methods based on sequencing by synthesis rely optical readouts; however, a direct electrical method this technique not available. We report here an approach enzymatically catalyzed induced surface charge perturbation. discovered...

10.1073/pnas.0601184103 article EN Proceedings of the National Academy of Sciences 2006-04-14

Antidepressants inhibit many membrane receptors and ionic channels, including the L-type calcium channel. Here, we investigated inhibition of current (<i>I</i><sub>Ca</sub>) by antidepressants in enzymatically isolated rat ventricular myocytes using whole-cell patch clamp. The molecular mechanism was studied comparing voltage state dependence antidepressant <i>I</i><sub>Ca</sub> to respective properties antagonists, studying effect...

10.1124/jpet.107.132456 article EN Journal of Pharmacology and Experimental Therapeutics 2007-11-29

The local control concept of excitation–contraction coupling in the heart postulates that activity sarcoplasmic reticulum ryanodine receptor channels (RyR) is controlled by Ca 2+ entry through adjoining sarcolemmal single dihydropyridine (DHPRs). One unverified premise this hypothesis RyR must be fast enough to track brief (&lt;0.5 ms) elevations accompanying DHPR channel openings. To define kinetic limits effective trigger signals, we recorded cardiac RyRs lipid bilayers during rapid and...

10.1085/jgp.114.6.787 article EN The Journal of General Physiology 1999-11-15

10.1016/s0006-3495(96)79492-4 article EN publisher-specific-oa Biophysical Journal 1996-12-01

10.1016/s0006-3495(93)81465-6 article EN publisher-specific-oa Biophysical Journal 1993-04-01

The synergic effect of luminal Ca2+, cytosolic and adenosine triphosphate (ATP) on activation cardiac ryanodine receptor (RYR2) channels was examined in planar lipid bilayers. dose–response RYR2 gating activity to ATP characterized at a diastolic Ca2+ concentration 100 nM over range concentrations and, vice versa, 1 mM concentrations. Low level (1 mM) significantly increased the affinity channel for but without substantial channel. Higher levels (8–53 markedly amplified effects by...

10.1085/jgp.201110708 article EN cc-by-nc-sa The Journal of General Physiology 2012-07-30

Despite its importance and abundance of experimental data, the molecular mechanism RyR2 activation by calcium is poorly understood. Recent studies involving coexpression wild-type (WT) together with a mutant deficient in calcium-dependent (Li, P., S.R. Chen. 2001. J. Gen. Physiol. 118:33-44) revealed large variations sensitivity RyR tetramers their monomer composition. Together previous results on kinetics Ca (Zahradníková, A., I. Zahradník, Györke, S. Györke. 1999. 114:787-798), these data...

10.1085/jgp.200509328 article EN The Journal of General Physiology 2005-10-31

The principal role of calcium current in the triggering release cardiac myocytes is well recognized. mechanism how (I(Ca)) controls intensity not clear because stochastic nature voltage-dependent gating channels (DHPRs) and calcium-dependent ryanodine receptors (RyRs). To disclose relation between DHPR openings probability release, local activation by I(Ca) was investigated rat ventricular using patch-clamp confocal microscopy. Calcium spikes were activated temporally synchronized triggers,...

10.1113/jphysiol.2007.149989 article EN The Journal of Physiology 2008-06-27

Phenylalkylamines, benzothiazepines, and dihydropyridines bind noncompetitively to the L-type calcium channel. The molecular mechanisms of this interaction were investigated in enzymatically isolated rat ventricular myocytes using whole-cell patch-clamp technique. When applied alone, felodipine, verapamil, diltiazem inhibited current with values inhibitory constant (<i>K</i><sub>B</sub>) 11, 246, 512 nM, respectively, whereas...

10.1124/jpet.107.122176 article EN Journal of Pharmacology and Experimental Therapeutics 2007-05-02

Cytosolic calcium concentration in resting cardiac myocytes locally fluctuates as a result of spontaneous microscopic Ca2+ releases or abruptly rises an external trigger. These processes, observed sparks, are fundamental for proper function muscle. In this study, we analyze how the characteristics and triggered sparks related to ryanodine receptor (RYR) gating. We show that frequency probability distribution release flux quanta correspond quantitatively predictions allosteric homotetrameric...

10.1085/jgp.200910380 article EN The Journal of General Physiology 2010-06-14

Human ryanodine receptor 2 (hRyR2) mediates calcium release from the sarcoplasmic reticulum, enabling cardiomyocyte contraction. The N-terminal region of hRyR2 (amino acids 1-606) is target >30 arrhythmogenic mutations and contains a binding site for phosphoprotein phosphatase 1. Here, solution crystal structures determined under near-physiological conditions, as well homology model region, are presented. N-terminus held together by unique network interactions among its three domains, A, B...

10.1107/s1399004714020343 article EN cc-by Acta Crystallographica Section D Biological Crystallography 2014-10-22

In mammalian cardiac myocytes, calcium released into the dyadic space rapidly inactivates current ( I Ca ). We used this 2+ release-dependent inactivation (RDI) of as a local probe sarcoplasmic reticulum release activation. whole cell patch-clamped rat ventricular entry induced by short prepulses from —50 mV to positive voltages caused suppression peak during test pulse. The negative correlation between and pulse indicated that RDI evoked prepulse affected only channels in those dyads which...

10.1152/ajpcell.00272.2003 article EN AJP Cell Physiology 2004-01-31

Abstract Cardiac excitation-contraction coupling relies on dyads, the intracellular calcium synapses of cardiac myocytes, where plasma membrane contacts sarcoplasmic reticulum and electrical excitation triggers release. The morphology dyads dynamics local release vary substantially. To better understand correspondence between structure functionality we estimated incidences structurally different kinetically sites tested their responsiveness to experimental myocardial injury in left...

10.1038/s41598-020-64840-5 article EN cc-by Scientific Reports 2020-05-15

The dyads of cardiac myocytes contain ryanodine receptors (RYRs) that generate calcium sparks upon activation. To test how geometric factors RYR distribution contribute to the formation sparks, which cannot be addressed experimentally, we performed in silico simulations on a large set models release sites (CRSs). Our covered observed range number, density, and spatial arrangement. function CRSs was modeled by openings, with an open probability dependent concentrations free Ca2+ Mg2+ ions,...

10.1085/jgp.202012685 article EN cc-by-nc-sa The Journal of General Physiology 2021-03-18

Mg 2+ , an important constituent of the intracellular milieu in cardiac myocytes, is known to inhibit ryanodine receptor (RyR) Ca release channels by competing with at cytosolic activation sites channel. However, significance this competition for local, dynamic -signaling processes thought govern excitation-contraction (EC) coupling remains largely unknown. In present study, stimuli different waveforms (i.e., sustained and brief) were generated photolysis caged compound nitrophenyl...

10.1152/ajpcell.00118.2003 article EN AJP Cell Physiology 2003-11-01

The local calcium release flux signals (calcium spikes) evoked by membrane depolarization were recorded at high temporal resolution (2000 lines s(-1)) in isolated ventricular myocytes of male rats, using combination scanning confocal microscopy and the patch-clamp technique. kinetic properties spikes investigated. time course spike activation could be described reliably a model with higher-order (n = 3) kinetics, but not first-order exponential process. A termination coupled to its was...

10.1113/jphysiol.2006.117796 article EN The Journal of Physiology 2006-11-24

Wolframin (Wfs1) is a membrane protein of the sarco/endoplasmic reticulum. Wfs1 mutations are responsible for Wolfram syndrome, characterized by diabetic and neurological symptoms. Although expressed in cardiac muscle, its role this tissue not clear. We have effect invalidation on calcium signalling-related processes isolated ventricular myocytes exon5-Wfs1 deficient rats (Wfs1 e5/ e5) before onset overt disease. Calcium transients contraction were measured field-stimulated using confocal...

10.3389/fphys.2019.00172 article EN cc-by Frontiers in Physiology 2019-03-13

Intracellular calcium signals are studied by laser-scanning confocal fluorescence microscopy. The required spatio-temporal resolution makes description of difficult because the low signal-to-noise ratio. We designed a new procedure spike analysis based on their fitting with model. accuracy and precision were tested synthetic datasets generated either randomly varied parameters Gaussian noise constant amplitude, or various amplitudes. Statistical was used to evaluate performance algorithms....

10.1371/journal.pone.0064394 article EN cc-by PLoS ONE 2013-05-31

The role of cardiac ryanodine receptor (RyR) gating in the initiation and propagation calcium waves was investigated using a mathematical model comprising stochastic description RyR deterministic diffusion sequestration. We used one-dimensional array equidistantly spaced clusters, representing confocal scanning line, to simulate formation sparks. Our provided an excellent dependence frequency diastolic sparks increased tendency for production after decrease cytosolic buffering. developed...

10.1085/jgp.201411281 article EN The Journal of General Physiology 2015-05-25
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