Anthony M. Joudi

ORCID: 0000-0003-1232-3256
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About
Contact & Profiles
Research Areas
  • Immune Cell Function and Interaction
  • COVID-19 Clinical Research Studies
  • Epigenetics and DNA Methylation
  • Respiratory viral infections research
  • Diabetes and associated disorders
  • T-cell and B-cell Immunology
  • Immune cells in cancer
  • SARS-CoV-2 and COVID-19 Research
  • Influenza Virus Research Studies
  • Pneumonia and Respiratory Infections
  • Mechanical Circulatory Support Devices
  • Algorithms and Data Compression
  • DNA Repair Mechanisms
  • Poisoning and overdose treatments
  • Vascular Tumors and Angiosarcomas
  • Genomics and Phylogenetic Studies
  • Sirtuins and Resveratrol in Medicine
  • Urinary and Genital Oncology Studies
  • Immune responses and vaccinations
  • Respiratory Support and Mechanisms
  • Antibiotic Use and Resistance
  • Colorectal Cancer Screening and Detection
  • Long-Term Effects of COVID-19
  • Autophagy in Disease and Therapy
  • Nosocomial Infections in ICU

Northwestern University
2021-2025

Lung Institute
2024

Pulmonary and Critical Care Associates
2021

Loyola University Medical Center
2016

Rogan A. Grant Luisa Morales‐Nebreda Nikolay S. Markov Suchitra Swaminathan Melissa Querrey and 95 more Estefany Rios-Guzman Darryl A. Abbott Helen K. Donnelly Alvaro Donayre Isaac A. Goldberg Zasu M. Klug Nicole Borkowski Ziyan Lu Hermon Kihshen Yuliya Politanska Lango Sichizya Mengjia Kang Ali Shilatifard Chao Qi Jon W. Lomasney A. Christine Argento Jacqueline M. Kruser Elizabeth S. Malsin Chiagozie I. Pickens Sean B. Smith James M. Walter Anna Pawlowski Daniel Schneider Prasanth Nannapaneni Hiam Abdala‐Valencia Ankit Bharat Cara J. Gottardi G. R. Scott Budinger Alexander V. Misharin Benjamin D. Singer Richard G. Wunderink Rogan A. Grant Luisa Morales‐Nebreda Nikolay S. Markov Suchitra Swaminathan Melissa Querrey Estefany Rios-Guzman Darryl A. Abbott Helen K. Donnelly Alvaro Donayre Isaac A. Goldberg Zasu M. Klug Nicole Borkowski Ziyan Lu Hermon Kihshen Yuliya Politanska Lango Sichizya Mengjia Kang Ali Shilatifard Chao Qi Jon W. Lomasney A. Christine Argento Jacqueline M. Kruser Elizabeth S. Malsin Chiagozie I. Pickens Sean B. Smith James M. Walter Anna Pawlowski Daniel Schneider Prasanth Nannapaneni Hiam Abdala‐Valencia Ankit Bharat Cara J. Gottardi G. R. Scott Budinger Alexander V. Misharin Benjamin D. Singer Richard G. Wunderink Ajay A. Wagh Alan R. Hauser Alexis Rose Wolfe Anjali Thakrar Anjana V. Yeldandi Ann A. Wang Anne R. Levenson Anthony M. Joudi Betty T. Tran Catherine A. Gao Chitaru Kurihara Clara Schroedl Curt M. Horvath Daniel Meza David D. Odell David W. Kamp Deborah R. Winter Egon A. Ozer Elisheva D. Shanes Elizabeth T. Bartom Emily J. Rendleman Emily M. Leibenguth Firas Wehbe Gabrielle Y. Liu Gaurav Gadhvi Heliodoro Tejedor Navarro Jacob I. Sznajder Jane E. Dematte

10.1038/s41586-020-03148-w article EN other-oa Nature 2021-01-11

Rationale: Current guidelines recommend patients with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pneumonia receive empirical antibiotics for suspected bacterial superinfection on the basis of weak evidence. Rates ventilator-associated (VAP) in clinical trials SARS-CoV-2 are unexpectedly low. Objectives: We conducted an observational single-center study to determine prevalence and etiology at time initial intubation incidence subsequent VAP pneumonia. Methods: Bronchoscopic...

10.1164/rccm.202106-1354oc article EN cc-by-nc-nd American Journal of Respiratory and Critical Care Medicine 2021-08-19

Regulatory T (Treg) cells orchestrate resolution and repair of acute lung inflammation injury after viral pneumonia. Compared with younger patients, older individuals experience impaired recovery worse clinical outcomes severe infections, including influenza SARS coronavirus 2 (SARS-CoV-2). Whether age is a key determinant Treg cell prorepair function remains unknown. Here, we showed that aging results in cell-autonomous impairment reparative experimental Transcriptional DNA methylation...

10.1172/jci.insight.141690 article EN cc-by JCI Insight 2021-02-27
Nikolay S. Markov Ziyou Ren Karolina J. Senkow Rogan A. Grant Catherine A. Gao and 95 more Elizabeth S. Malsin Lango Sichizya Hermon Kihshen Kathryn A. Helmin Milica Jovisic Jason Arnold Xochítl G. Pérez-Leonor Hiam Abdala‐Valencia Suchitra Swaminathan Julu Nwaezeapu Mengjia Kang Luke V. Rasmussen Egon A. Ozer Ramon Lorenzo‐Redondo Judd F. Hultquist Lacy M. Simons Estefany Rios-Guzman Alexander V. Misharin Richard G. Wunderink G. R. Scott Budinger Benjamin D. Singer Luisa Morales‐Nebreda Hiam Abdala‐Valencia Luke V. Rasmussen Judd F. Hultquist Lacy Simmons Estefany Rios-Guzman Michael Alexander Arghavan Alisoltani Joseph I. Bailey Elizabeth T. Bartom Ankit Bharat Thomas Bolig Nicole Borkowski Navdeep S. Chandel Katie Clepp John M. Coleman Michael J. Cuttica Thaddeus R. Cybulski Jane E. Dematte Joseph S. Deters Estefani Diaz Alvaro Donayre Helen K. Donnelly Justin A. Fiala Gaurav Gadhvi Khalilah L. Gates Samuel W. M. Gatesy Pearl D. Go Cara J. Gottardi Stefan J. Green Elen Gusman SeungHye Han Erica M. Hartmann Alan R. Hauser Curt M. Horvath Mishaal Hukamdad Sydney M. Hyder Manu Jain Emmy Jonasson Anthony M. Joudi Rachel Kadar Ravi Kalhan David W. Kamp Manoj Kandpal David A. Kidd Zasu M. Klug Erin A. Korth Jacqueline M. Kruser Romy Lawrence Emily M. Leibenguth Anne R. Levenson Lindsey D. Gradone Gabrielle Y. Liu Jon W. Lomasney Theresa A. Lombardo Ziyan Lu Amy Ludwig Ali Mahmoud Alexandra C. McQuattie‐Pimentel Daniel Meza Ruben Mylvaganam Prasanth Nannapaneni Sophia Nozick Luı́s A. Nunes Amaral Radhika A. Patel Anna Pawlowski Chiagozie I. Pickens Yuliya Politanska Taylor A. Poor Michelle Prickett Chao Qi Melissa Querrey Karen M. Ridge Madeline L. Rosenbaum

10.1038/s41590-024-01914-w article EN Nature Immunology 2024-08-13

FOXP3+ natural regulatory T cells (nTregs) promote resolution of inflammation and repair epithelial damage following viral pneumonia-induced lung injury, thus representing a cellular therapy for patients with acute respiratory distress syndrome (ARDS). Whether in vitro induced Tregs (iTregs), which can be rapidly generated substantial numbers from conventional cells, also recovery is unknown. nTregs require specific DNA methylation patterns maintained by the epigenetic regulator,...

10.1101/2025.02.25.640199 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2025-03-01

CD4+FOXP3+ regulatory T (Treg) cells maintain self-tolerance, suppress the immune response to cancer, and protect against tissue injury during acute inflammation. Treg require mitochondrial metabolism function, but how adapt their metabolic programs optimize function an occurring in a metabolically stressed microenvironment remains unclear. Here, we tested whether energy homeostasis-maintaining enzyme AMPK aberrant microenvironments caused by malignancy or lung injury, finding that is...

10.1172/jci179572 article EN cc-by Journal of Clinical Investigation 2025-03-18

"The Paris System" proposes a 7-tier classification system for urine cytology. Establishing the risk of malignancy (ROM) associated with these diagnostic categories is essential to determine appropriate management patients. The objective this study was ROM "positive" and "suspicious" categories.The authors searched their electronic records cytology specimens that had been diagnosed as or high-grade urothelial carcinoma within an 11-year time frame. Then, determined 6-month follow-up...

10.1002/cncy.21764 article EN Cancer Cytopathology 2016-08-10

Abstract DNA methylation at cytosine-phospho-guanine (CpG) residues is a vital biological process that regulates cell identity and function. Although widely used, bisulfite-based cytosine conversion procedures for sequencing require high temperature extreme pH, which lead to degradation, especially among unmethylated cytosines. Enzymatic (EM-seq), an enzyme-based method, has been proposed as less biased alternative profiling. Compared methods, EM-seq boasts greater genome coverage with GC...

10.1101/2024.05.24.595803 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2024-05-27

This article has been removed from the AJRCCM website, as it may be revised in near future.

10.1164/rccm.202202-0277up article EN cc-by-nc-nd American Journal of Respiratory and Critical Care Medicine 2022-04-20

Abstract FOXP3+ regulatory T (Treg) cells are necessary to coordinate resolution of lung inflammation and a return homeostasis after respiratory viral infections, but the specific molecular requirements for these functions cell types governed by Treg remain unclear. This question holds significance as clinical trials transfer therapy infection being planned executed. Here, we report causal experiments in mice determining that control numbers activated CD8+ during recovery from influenza...

10.1101/2024.05.30.596295 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2024-06-02

Background: Right heart remodeling is noted in patients with severe COVID‐19‐associated acute respiratory distress syndrome (ARDS). There limited information regarding right recovery following lung transplantation this cohort. Methods: Retrospective review of institutional transplant database from June 2020 to 2022 was performed at Northwestern University Chicago, Illinois. Demographic, laboratory, histopathologic, outcomes, and pre‐ postoperative echocardiographic data were recorded...

10.1155/2024/8483800 article EN cc-by Journal of Transplantation 2024-01-01

CD4+FOXP3+ regulatory T (Treg) cells maintain self-tolerance, suppress the immune response to cancer, and protect against tissue injury in lung other organs. Treg require mitochondrial metabolism exert their function, but how adapt metabolic programs sustain optimize function during an occurring a metabolically stressed microenvironment remains unclear. Here, we tested whether energy homeostasis-maintaining enzyme AMP-activated protein kinase (AMPK) aberrant microenvironments caused by...

10.1101/2023.11.29.568904 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2023-12-01
Roxane Rohani Marc H. Scheetz Helen K. Donnelly Alvaro Donayre Mengjia Kang and 95 more Estefani Diaz Kay Dedicatoria Alan R. Hauser Egon A. Ozer Sophia Nozick Chao Qi Anna Pawlowski Michael Neely Alexander V. Misharin Richard G. Wunderink Nathaniel J. Rhodes Hiam Abdala‐Valencia Michael Alexander Jason Arnold Joseph I. Bailey Elizabeth T. Bartom Ankit Bharat Thomas Bolig Nicole Borkowski G. R. Scott Budinger Navdeep S. Chandel Rebecca K Clepp John R. Coleman Michael J. Cuttica Thaddeus R. Cybulski Jane E. Dematte Joseph S. Deters Justin A Fiala Gaurav T Gadhvi Catherine A. Gao Khalilah L. Gates Samuel W. M. Gatesy Ritika Giri Pearl D. Go Cara J. Gottardi Rogan A. Grant Stefan J. Green Elen Gusman Estefany Rios-Guzman SeungHye Han Erica M. Hartmann Curt M. Horvath Mishaal Hukamdad Sydney M. Hyder Manu Jain Anthony M. Joudi Rachel Kadar Ravi Kalhan David W. Kamp Manoj Kandpal David A. Kidd Hermon Kihshen Zasu M. Klug Erin A. Korth Jacqueline M. Kruser Romy Lawrence Emily M. Leibenguth Anne R. Levenson Lindsey D. Gradone Gabrielle Y. Liu Jon W. Lomasney Theresa A. Lombardo Ziyan Lu Amy Ludwig Ali Mahmoud Elizabeth S. Malsin Nikolay S. Markov Alexandra C. McQuattie‐Pimentel Daniel Meza Felix Leonardo Morales Luisa Morales‐Nebreda Richard I. Morimoto Ruben Mylvaganam Prasanth Nannapaneni Luı́s A. Nunes Amaral Radhika A. Patel Lorenzo L. Pesce Chiagozie I. Pickens Yuliya Politanska Taylor A. Poor Michelle Prickett Melissa Querrey Luke V. Rasmussen Ziyou Ren Karen M. Ridge Madeline L Rosenbaum Sharon R Rosenberg Timothy Rowe Susan Russell Marc A. Sala Daniel Schneider Clara Schroedl Katharine Secunda Patrick C. Seed Karolina J. Senkow

Abstract Objectives Critical illness reduces β-lactam pharmacokinetic/pharmacodynamic (PK/PD) attainment. We sought to quantify PK/PD attainment in patients with hospital-acquired pneumonia. Methods Meropenem plasma PK data (n = 70 patients) were modelled, rates calculated for empirical and definitive targets, between-patient variability was quantified [as a coefficient of variation (CV%)]. Results Attainment 100% T>4×MIC variable both (CV% 92) directed 33%) treatment. Conclusions...

10.1093/jac/dkac245 article EN Journal of Antimicrobial Chemotherapy 2022-07-23
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