Shayan Fassih

ORCID: 0000-0003-2968-658X
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About
Contact & Profiles
Research Areas
  • COVID-19 Clinical Research Studies
  • SARS-CoV-2 and COVID-19 Research
  • Diabetes and associated disorders
  • SARS-CoV-2 detection and testing
  • Global Cancer Incidence and Screening
  • Hepatitis B Virus Studies
  • Cardiovascular Disease and Adiposity
  • Experimental Learning in Engineering
  • Innovative Teaching Methods
  • Cervical Cancer and HPV Research
  • Single-cell and spatial transcriptomics
  • COVID-19 epidemiological studies
  • Inflammatory Biomarkers in Disease Prognosis
  • Biomedical and Engineering Education
  • vaccines and immunoinformatics approaches
  • Biomarkers in Disease Mechanisms
  • Long-Term Effects of COVID-19

University of Oxford
2021-2022

University of Worcester
2021

Oxford University Hospitals NHS Trust
2021

Mark Ainsworth Monique Andersson Kathryn Auckland J. Kenneth Baillie Eleanor Barnes and 95 more Sally Beer Amy Beveridge Sagida Bibi Luke Blackwell Martyna Borak Abbie Bown Tim Brooks N. Burgess-Brown Susana Camara Matthew Catton Kevin Chau Thomas Christott Elizabeth Clutterbuck Jesse A. Coker Richard J. Cornall Stuart Cox David Crawford-Jones Derrick W. Crook Silvia D’Arcangelo Wanwisa Dejnirattsai Julie Dequaire Stavros Dimitriadis Kate E. Dingle George Doherty Christina Dold Tao Dong Susanna Dunachie Daniel Ebner Marc Emmenegger Alexis Espinosa David W. Eyre Rory Fairhead Shayan Fassih Conor Feehily Sally Felle Alejandra Fernandez‐Cid Maria Fernandez Mendoza Thomas Foord Thomas Fordwoh Deborah McKee John Frater Verónica Sánchez Nick Gent Dominique Georgiou Christopher J. Groves Bassam Hallis Peter Hammond Stephanie B. Hatch Heli Harvala Jennifer Hill Sarah Hoosdally Bryn Horsington Alison Howarth Tim James Katie Jeffery Elizabeth Jones Anita Justice Fredrik Karpe James Kavanagh David Kim Richard Kirton Paul Klenerman Julian C. Knight Leonidas Koukouflis Andrew Kwok U Leuschner Robert H. Levin Aline Linder Teresa Lockett Sheila Lumley Spyridoula Marinou Brian D. Marsden José Luis Martínez Lucas Martins Ferreira Lara Hannan Mason Philippa C. Matthews Alexander J. Mentzer Alexander Mobbs Juthathip Mongkolsapaya Jordan Morrow Shubhashish Mukhopadhyay Matthew Neville Sarah Oakley Marta Oliveira Ashley Otter Kevin Paddon Jordan Pascoe Yanchun Peng Elena Perez Prem Perumal Tim Peto Hayleah Pickford Rutger J. Ploeg Andrew J. Pollard Anastasia Richardson

<h2>Summary</h2><h3>Background</h3> Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has caused a global pandemic in 2020. Testing is crucial for mitigating public health and economic effects. Serology considered key to population-level surveillance potentially individual-level risk assessment. However, immunoassay performance not been compared on large, identical sample sets. We aimed investigate the of four high-throughput commercial SARS-CoV-2 antibody immunoassays novel...

10.1016/s1473-3099(20)30634-4 article EN cc-by The Lancet Infectious Diseases 2020-09-24
David Ahern Zhichao Ai Mark Ainsworth Chris Allan Alice Allcock and 95 more Brian Angus M. Azim Ansari Carolina V. Arancibia-Cárcamo Dominik Aschenbrenner Moustafa Attar J. Kenneth Baillie Eleanor Barnes Rachael Bashford-Rogers Archana Bashyal Sally Beer G. Berridge Amy Beveridge Sagida Bibi Tihana Bicanic Luke Blackwell Paul Bowness Andrew Brent Andrew Brown John Broxholme David Buck Katie L. Burnham Helen M. Byrne Susana Camara Ivan Candido-Ferreira Philip D. Charles Wentao Chen Yi‐Ling Chen Amanda Y. Chong Elizabeth Clutterbuck Mark Coles Christopher P. Conlon Richard J. Cornall Adam P. Cribbs Fabiola Curion Emma E. Davenport Neil Davidson Simon Davis Calliope A. Dendrou Julie Dequaire Lea Dib James Docker Christina Dold Tao Dong Damien J. Downes Hal Drakesmith Susanna Dunachie David A. Duncan Chris Eijsbouts Robert Esnouf Alexis Espinosa Rachel Etherington Benjamin P. Fairfax Rory Fairhead Hai Fang Shayan Fassih Sally Felle Maria Fernandez Mendoza Ricardo Melo Ferreira Román Fischer Thomas Foord Aden Forrow John Frater Anastasia Fries Verónica Sánchez Lucy C. Garner Clementine Geeves Dominique Georgiou Leila Godfrey Tanya Golubchik Maria Gomez Vazquez Angie Green Hong Harper Heather A. Harrington Raphael Heilig Svenja Hester Jennifer Hill Charles Hinds Clare Hird Ling‐Pei Ho Renee S. Hoekzema Benjamin Hollis Jim R. Hughes Paula Hutton Matthew A. Jackson-Wood Ashwin Jainarayanan Anna James-Bott Kathrin Jansen Katie Jeffery Elizabeth Jones Luke Jostins Georgina Kerr David Kim Paul Klenerman Julian C. Knight Vinod Kumar

Treatment of severe COVID-19 is currently limited by clinical heterogeneity and incomplete description specific immune biomarkers. We present here a comprehensive multi-omic blood atlas for patients with varying severity in an integrated comparison influenza sepsis versus healthy volunteers. identify signatures correlates host response. Hallmarks disease involved cells, their inflammatory mediators networks, including progenitor cells myeloid lymphocyte subsets, features the repertoire,...

10.1016/j.cell.2022.01.012 article EN cc-by Cell 2022-01-21
Adriana Tomić Donal Skelly Ane Ogbe Daniel O’Connor Matthew Pace and 95 more Emily Adland Frances Alexander Mohammad Ali Kirk Allott M. Azim Ansari Sandra Belij‐Rammerstorfer Sagida Bibi Luke Blackwell Anthony Brown Helen Brown Breeze E. Cavell Elizabeth Clutterbuck Thushan I. de Silva David W. Eyre Sheila Lumley Amy Flaxman James T. Grist Carl-Philipp Hackstein Rachel Halkerston Adam Harding Jennifer Hill Tim James Cecilia Jay Síle A. Johnson Barbara Kronsteiner Yolanda Lie Aline Linder Stephanie Longet Spyridoula Marinou Philippa C. Matthews Jack Mellors Christos J. Petropoulos Patpong Rongkard Cynthia Sedik Laura Silva-Reyes Holly Smith Lisa Stockdale Stephen Taylor Stephen J. Thomas Timothy Tipoe Lance Turtle Vinícius Vieira Terri Wrin Lizzie Stafford Hibatullah Abuelgasim Ahmed Alhussni Carolina V. Arancibia-Cárcamo Martyna Borak Joseph Cutteridge Alexandra Deeks Lucy Denly Stavros Dimitriadis Shayan Fassih Thomas Foord Thomas Fordwoh Jennifer Holmes Bryn Horsington Sven Kerneis David Kim Katy Lillie Jordan Morrow Denise O’Donnell Thomas Ritter Beatrice Simmons A Taylor Sarah Thomas Yolanda Warren Adam Watson Esme Weeks Robert Wilson Rebecca Young C.J. Duncan Shona C. Moore Rebecca P. Payne Alex Richter Sarah Rowland–Jones Alexander J. Mentzer Mark Philip Cassar Tao Dong Anastasia Fries Javier Gilbert‐Jaramillo Ling‐Pei Ho Julian C. Knight Stefan Neubauer Yanchun Peng Nayia Petousi Betty Raman Nick P. Talbot Andrew J. Pollard Teresa Lambe Chris Conlon Katie Jeffery Simon Travis Philip Goulder John Frater

Abstract The trajectories of acquired immunity to severe acute respiratory syndrome coronavirus 2 infection are not fully understood. We present a detailed longitudinal cohort study UK healthcare workers prior vaccination, presenting April-June 2020 with asymptomatic or symptomatic infection. Here we show highly variable range responses, some which (T cell interferon-gamma ELISpot, N-specific antibody) wane over time, while others (spike-specific antibody, B memory ELISpot) stable. use...

10.1038/s41467-022-28898-1 article EN cc-by Nature Communications 2022-03-10
Christos P Kotanidis Cheng Xie Donna Maria Alexander Jonathan Rodrigues Katie L. Burnham and 95 more Alexander J. Mentzer Daniel O’Connor Julian C. Knight Muhammad Siddique Helen Lockstone Sheena Thomas Rafail A. Kotronias Evangelos K. Oikonomou Ileana Badi Maria Lyasheva Cheerag Shirodaria Sheila Lumley Bede Constantinides Nicholas Sanderson Gillian Rodger Kevin Chau Archie Lodge Maria Tsakok Fergus Gleeson David Adlam Praveen P. N. Rao Das Indrajeet Aparna Deshpande Amrita Bajaj Benjamin Hudson Vivek Srivastava Shakil Farid George Krasopoulos Rana Sayeed Ling‐Pei Ho Stefan Neubauer David E. Newby Keith M. Channon John Deanfield Charalambos Antoniades David Ahern Zhichao Ai Mark Ainsworth Chris Allan Alice Allcock Brian Angus M. Azim Ansari Carolina V. Arancibia-Cárcamo Dominik Aschenbrenner Moustafa Attar J. Kenneth Baillie Eleanor Barnes Rachael Bashford-Rogers Archana Bashyal Sally Beer G. Berridge Amy Beveridge Sagida Bibi Tihana Bicanic Luke Blackwell Paul Bowness Andrew Brent Andrew Brown John Broxholme David Buck Katie L. Burnham Helen M. Byrne Susana Camara Ivan Candido-Ferreira Philip D. Charles Wentao Chen Yi‐Ling Chen Amanda Y. Chong Elizabeth Clutterbuck Mark Coles Christopher P. Conlon Richard J. Cornall Adam P. Cribbs Fabiola Curion Emma E. Davenport Neil C. Davidson Simon Davis Calliope A. Dendrou Julie Dequaire Lea Dib James Docker Christina Dold Tao Dong Damien J. Downes Hal Drakesmith Susanna Dunachie David A. Duncan Chris Eijsbouts Robert Esnouf Alexis Espinosa Rachel Etherington Benjamin P. Fairfax Rory Fairhead Hai Fang Shayan Fassih

10.1016/s2589-7500(22)00132-7 article EN cc-by The Lancet Digital Health 2022-08-26
David Ahern Zhichao Ai Mark Ainsworth Chris Allan Alice Allcock and 95 more M. Azim Ansari Carolina V. Arancibia-Cárcamo Dominik Aschenbrenner Moustafa Attar J. Kenneth Baillie Eleanor Barnes Rachael Bashford-Rogers Archana Bashyal Sally Beer G. Berridge Amy Beveridge Sagida Bibi Tihana Bicanic Luke Blackwell Paul Bowness Andrew Brent Andrew Brown John Broxholme David Buck Katie L. Burnham Helen M. Byrne Susana Camara Ivan Candido-Ferreira Philip D. Charles Wentao Chen Yi‐Ling Chen Amanda Y. Chong Elizabeth Clutterbuck Mark Coles Christopher P. Conlon Richard J. Cornall Adam P. Cribbs Fabiola Curion Emma E. Davenport Neil Davidson Simon Davis Calliope A. Dendrou Julie Dequaire Lea Dib James Docker Christina Dold Tao Dong Damien J. Downes Hal Drakesmith Susanna Dunachie David A. Duncan Chris Eijsbouts Robert Esnouf Alexis Espinosa Rachel Etherington Benjamin P. Fairfax Rory Fairhead Hai Fang Shayan Fassih Sally Felle Maria Fernandez Mendoza Ricardo C. Ferreira Román Fischer Thomas Foord Aden Forrow John Frater Anastasia Fries Verónica Sánchez Lucy C. Garner Clementine Geeves Dominique Georgiou Leila Godfrey Tanya Golubchik Maria Gomez Vazquez Angie Green Hong Harper Heather A. Harrington Raphael Heilig Svenja Hester Jennifer Hill Charles Hinds Clare Hird Ling‐Pei Ho Renee S. Hoekzema Benjamin Hollis Jim R. Hughes Paula Hutton Matthew Jackson Ashwin Jainarayanan Anna James-Bott Kathrin Jansen Katie Jeffery Elizabeth Jones Luke Jostins Georgina Kerr David Kim Paul Klenerman Julian C. Knight Vinod Kumar Piyush Kumar Sharma

Summary Treatment of severe COVID-19 is currently limited by clinical heterogeneity and incomplete understanding potentially druggable immune mediators disease. To advance this, we present a comprehensive multi-omic blood atlas in patients with varying severity compare influenza, sepsis healthy volunteers. We identify signatures correlates host response. Hallmarks disease revealed cells, their inflammatory networks as potential therapeutic targets, including progenitor cells specific myeloid...

10.1101/2021.05.11.21256877 preprint EN cc-by medRxiv (Cold Spring Harbor Laboratory) 2021-05-11
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