David E. Kleiner

ORCID: 0000-0003-3442-4453
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About
Contact & Profiles
Research Areas
  • Liver Disease Diagnosis and Treatment
  • Hepatitis C virus research
  • Hepatitis B Virus Studies
  • Liver Disease and Transplantation
  • Drug-Induced Hepatotoxicity and Protection
  • Cancer Genomics and Diagnostics
  • Liver Diseases and Immunity
  • Lung Cancer Research Studies
  • Cancer Immunotherapy and Biomarkers
  • Hepatocellular Carcinoma Treatment and Prognosis
  • Lung Cancer Treatments and Mutations
  • Diet, Metabolism, and Disease
  • Pancreatic and Hepatic Oncology Research
  • Cholangiocarcinoma and Gallbladder Cancer Studies
  • RNA modifications and cancer
  • Drug Transport and Resistance Mechanisms
  • Immune Cell Function and Interaction
  • Lipid metabolism and disorders
  • Immunotherapy and Immune Responses
  • Pancreatitis Pathology and Treatment
  • Gut microbiota and health
  • Peptidase Inhibition and Analysis
  • Pharmacogenetics and Drug Metabolism
  • Immunodeficiency and Autoimmune Disorders
  • Alcohol Consumption and Health Effects

National Cancer Institute
2016-2025

Center for Cancer Research
2016-2025

National Cancer Institute
2003-2025

National Institutes of Health
2016-2025

National Institute of Diabetes and Digestive and Kidney Diseases
1997-2024

Hepatitis B Foundation
2023

Research Network (United States)
2023

Klein Buendel (United States)
2023

National Institute of Allergy and Infectious Diseases
1991-2022

National Human Genome Research Institute
1999-2022

Nonalcoholic fatty liver disease (NAFLD) is characterized by hepatic steatosis in the absence of a history significant alcohol use or other known disease. steatohepatitis (NASH) progressive form NAFLD. The Pathology Committee NASH Clinical Research Network designed and validated histological feature scoring system that addresses full spectrum lesions NAFLD proposed activity score (NAS) for clinical trials. comprised 14 features, 4 which were evaluated semi-quantitatively: (0-3), lobular...

10.1002/hep.20701 article EN Hepatology 2005-05-24
Adrian Ally Miruna Balasundaram Rebecca Carlsen Eric Chuah Amanda Clarke and 95 more Noreen Dhalla Robert A. Holt Steven J.M. Jones Darlene Lee Yussanne Ma Marco A. Marra Michael Mayo Richard A. Moore Andrew J. Mungall Jacqueline E. Schein Payal Sipahimalani Angela Tam Nina Thiessen Dorothy Cheung Tina Wong Denise Brooks A. Gordon Robertson Reanne Bowlby Karen Mungall Sara Sadeghi Xi Liu Kyle R. Covington Eve Shinbrot David A. Wheeler Richard A. Gibbs Lawrence A. Donehower Linghua Wang Jay Bowen Julie M. Gastier‐Foster Mark Gerken Carmen Helsel Kristen Leraas Tara M. Lichtenberg Nilsa C. Ramirez Lisa Wise Erik Zmuda Stacey Gabriel Matthew Meyerson Carrie Cibulskis Bradley A. Murray Juliann Shih Rameen Beroukhim Andrew D. Cherniack Steven E. Schumacher Gordon Saksena Chandra Sekhar Pedamallu Lynda Chin Gad Getz Michael S. Noble Hailei Zhang David I. Heiman Juok Cho Nils Gehlenborg Gordon Saksena Douglas Voet Pei Lin Scott Frazer Timothy Defreitas Thomas J. Giordano Michael S. Lawrence Jaegil Kim Chad J. Creighton Donna M. Muzny HarshaVardhan Doddapaneni Hai Hu Min Wang Donna Morton Viktoriya Korchina Yi Han Huyen Dinh Lora Lewis Michelle Bellair Xiuping Liu Jireh Santibanez Robert Glenn Charles Lee Walker Hale Joel S. Parker Matthew D. Wilkerson D. Neil Hayes Sheila M. Reynolds Ilya Shmulevich Wei Zhang Yuexin Liu Lisa Iype Hala R. Makhlouf Michael Torbenson Sanjay Kakar Matthew M. Yeh Dhanpat Jain David E. Kleiner Dhanpat Jain Renumathy Dhanasekaran Hashem B. El–Serag Sun Young Yim

Liver cancer has the second highest worldwide mortality rate and limited therapeutic options. We analyzed 363 hepatocellular carcinoma (HCC) cases by whole-exome sequencing DNA copy number analyses, we 196 HCC methylation, RNA, miRNA, proteomic expression also. mutation analysis identified significantly mutated genes, including LZTR1, EEF1A1, SF3B1, SMARCA4. Significant alterations or downregulation hypermethylation in genes likely to result metabolic reprogramming (ALB, APOB, CPS1) were...

10.1016/j.cell.2017.05.046 article EN cc-by-nc-nd Cell 2017-06-01

Nonalcoholic steatohepatitis (NASH) is a chronic progressive liver disease that strongly associated with obesity. Currently, there no approved therapy for NASH. Weight reduction typically recommended, but efficacy data are lacking. We performed randomized controlled trial to examine the effects of lifestyle intervention using combination diet, exercise, and behavior modification, goal 7% 10% weight reduction, on clinical parameters The primary outcome measure was change in NASH histological...

10.1002/hep.23276 article EN Hepatology 2009-09-09

PREAMBLE The study of NAFLD has intensified significantly, with more than 1400 publications since 2018, when the last American Association for Study Liver Diseases (AASLD) Guidance document was published.1 This new AASLD reflects many advances in field pertinent to any practitioner caring patients and emphasizes noninvasive risk stratification therapeutics. A separate guideline focused on management context diabetes been written jointly by Clinical Endocrinology AASLD.2 Given significant...

10.1097/hep.0000000000000323 article EN Hepatology 2023-02-02

Abstract The diagnosis of nonalcoholic steatohepatitis (NASH) is defined by the presence and pattern specific histological abnormalities on liver biopsy. A separate system scoring features fatty disease (NAFLD) called NAFLD Activity Score (NAS) was developed as a tool to measure changes in during therapeutic trials. However, some studies have used threshold values NAS, specifically NAS ≥5, surrogate for histologic NASH. To evaluate whether this unintended use valid, biopsy clinical data from...

10.1002/hep.24127 article EN Hepatology 2010-12-13

Cytotoxic T-lymphocyte-associated antigen 4 (CTLA4) is an inhibitory receptor on T cells. Knocking out CTLA4 in mice causes lethal lymphoproliferation, and polymorphisms human are associated with autoimmune disease. Trials of the anti-CTLA4 antibody ipilimumab (MDX-010) have resulted durable cancer regression immune-mediated toxicities. A report diagnosis, pathology, treatment, clinical outcome, significance enterocolitis seen presented.We treated 198 patients metastatic melanoma (MM) or...

10.1200/jco.2005.04.5716 article EN Journal of Clinical Oncology 2006-05-18

Cytotoxic T lymphocyte antigen-4 (CTLA-4) is an inhibitory receptor found on immune cells. The consequences of mutations in CTLA4 humans are unknown. We identified germline heterozygous subjects with severe dysregulation from four unrelated families. Whereas Ctla4 mice have no obvious phenotype, human haploinsufficiency caused FoxP3(+) regulatory (Treg) cells, hyperactivation effector and lymphocytic infiltration target organs. Patients also exhibited progressive loss circulating B...

10.1126/science.1255904 article EN Science 2014-09-12

We observed a syndrome of intermittent fevers, early-onset lacunar strokes and other neurovascular manifestations, livedoid rash, hepatosplenomegaly, systemic vasculopathy in three unrelated patients. suspected genetic cause because the disorder presented early childhood.We performed whole-exome sequencing initial patients their unaffected parents candidate-gene with similar phenotype, as well two young siblings polyarteritis nodosa one patient small-vessel vasculitis. Enzyme assays,...

10.1056/nejmoa1307361 article EN New England Journal of Medicine 2014-02-19

Nonalcoholic steatohepatitis (NASH) is a common chronic liver disease for which there no known effective therapy. A proportion of patients with NASH progress to advanced fibrosis and cirrhosis. considered one the clinical features metabolic syndrome in insulin resistance plays central role. This prospective study evaluates role insulin-sensitizing agent treatment NASH. Eighteen nondiabetic biopsy-proven were treated pioglitazone (30 mg daily) 48 weeks. Tests sensitivity body composition as...

10.1002/hep.20012 article EN Hepatology 2004-01-01

The prognoses with respect to mortality and hepatic nonhepatic outcomes across the histologic spectrum of nonalcoholic fatty liver disease (NAFLD) are not well defined.

10.1056/nejmoa2029349 article EN New England Journal of Medicine 2021-10-20

Abstract: Nonalcoholic fatty liver disease is a common cause of chronic in the general population. steatohepatitis (NASH), aggressive form nonalcoholic disease, associated with an increased risk liver-related mortality and cardiovascular disease. At present, biopsy only generally acceptable method for diagnosis NASH assessment its progression toward cirrhosis. Although several treatments have shown evidence efficacy clinical trials varying design, there are no approved NASH, published often...

10.1002/hep.24376 article EN Hepatology 2011-04-21
Ni Huang Paola Pérez Takafumi Kato Yu Mikami Kenichi Okuda and 90 more Rodney C. Gilmore Cecilia Domínguez Conde Billel Gasmi Sydney Stein Margaret Beach Eileen Pelayo José O. Maldonado Bernard A. P. Lafont Shyh-Ing Jang Nadia Nasir Ricardo J. Padilla Valerie A. Murrah Robert Maile William Lovell Shannon M. Wallet Natalie M. Bowman Suzanne L. Meinig Matthew C. Wolfgang Saibyasachi N. Choudhury Mark Novotny Brian D. Aevermann Richard H. Scheuermann Gabrielle Cannon Carlton W. Anderson Rhianna E. Lee Julie T. Marchesan Mandy Bush Marcelo Freire Adam J. Kimple Daniel Herr Joseph Rabin Alison Grazioli Sanchita Das Benjamin French Thomas Pranzatelli John A. Chiorini David E. Kleiner Stefania Pittaluga Stephen M. Hewitt Peter D. Burbelo Daniel S. Chertow David E. Kleiner Michelly Sampaio De Melo Esra Dikoglu Sabina Desar Kris Ylaya Joon‐Yong Chung Grace Smith Daniel S. Chertow Kevin M. Vannella Marcos J. Ramos-Benítez Sabrina Ramelli Shelly Samet Ashley L. Babyak Luis Perez Valencia Mary Richert Nicole Hays Madeleine Purcell Shreya Singireddy Jocelyn Wu Joon‐Yong Chung Amy Borth Kimberly Bowers Anne Weichold Douglas Tran Ronson J. Madathil Eric Krause Daniel Herr Joseph Rabin Joseph A. Herrold Ali Tabatabai Eric Hochberg Christopher R. Cornachione Andrea R. Levine Michael T. McCurdy Kapil Saharia Zack Chancer Michael Mazzeffi Justin E. Richards James W. Eagan Yashvir Sangwan Inês Sequeira Sarah A. Teichmann Adam J. Kimple Karen M. Frank Janice S. Lee Richard C. Boucher Sarah A. Teichmann Blake M. Warner Kevin M. Byrd

Despite signs of infection—including taste loss, dry mouth and mucosal lesions such as ulcerations, enanthema macules—the involvement the oral cavity in coronavirus disease 2019 (COVID-19) is poorly understood. To address this, we generated analyzed two single-cell RNA sequencing datasets human minor salivary glands gingiva (9 samples, 13,824 cells), identifying 50 cell clusters. Using integrated normalization annotation, classified 34 unique subpopulations between gingiva. Severe acute...

10.1038/s41591-021-01296-8 article EN other-oa Nature Medicine 2021-03-25
Sydney Stein Sabrina Ramelli Alison Grazioli Joon‐Yong Chung Manmeet Singh and 95 more Claude Kwe Yinda Clayton W. Winkler Junfeng Sun James Dickey Kris Ylaya Sung Hee Ko Andrew P. Platt Peter D. Burbelo Martha Quezado Stefania Pittaluga Madeleine Purcell Vincent J. Munster Frida Belinky Marcos J. Ramos-Benítez Eli Boritz Izabella A. Lach Daniel Herr Joseph Rabin Kapil Saharia Ronson J. Madathil Ali Tabatabai Shahabuddin Soherwardi Michael T. McCurdy Ashley L. Babyak Luis Perez Valencia Shelly J. Curran Mary Richert Willie J. Young Sarah P. Young Billel Gasmi Michelly Sampaio De Melo Sabina Desar Saber Tadros Nadia Nasir Xueting Jin Sharika Rajan Esra Dikoglu Neval Ozkaya Grace Smith Elizabeth Emanuel Brian L. Kelsall Justin A. Olivera Megan Blawas Robert A. Star Nicole Hays Shreya Singireddy Jocelyn Wu Katherine Raja Ryan Curto Jean E. Chung Amy Borth Kimberly Bowers Anne Weichold Paula A. Minor Mir Ahmad N. Moshref Emily E. Kelly Mohammad M. Sajadi Thomas M. Scalea Douglas Tran Siamak Dahi Kristopher B. Deatrick Eric Krause Joseph A. Herrold Eric Hochberg Christopher R. Cornachione Andrea R. Levine Justin E. Richards John Elder Allen P. Burke Michael Mazzeffi Robert H. Christenson Zackary A. Chancer Mustafa Abdulmahdi Sabrina Sopha Tyler Goldberg Yashvir Sangwan Kristen Sudano Diane Blume Bethany Radin David E. Kleiner James W. Eagan Robert E. Palermo Anthony Harris Thomas J. Pohida Marcial Garmendia‐Cedillos George Dold Eric Saglio Phuoc Pham Karin E. Peterson Jeffrey I. Cohen Emmie de Wit Kevin M. Vannella Stephen M. Hewitt David E. Kleiner Daniel S. Chertow

10.1038/s41586-022-05542-y article EN Nature 2022-12-14

Cellular diversity in tumors is a key factor for therapeutic failures and lethal outcomes of solid malignancies. Here, we determined the single-cell transcriptomic landscape liver cancer biospecimens from 19 patients. We found varying degrees heterogeneity malignant cells within between diverse landscapes tumor microenvironment (TME). Strikingly, with higher were associated patient's worse overall survival. link hypoxia-dependent vascular endothelial growth expression TME polarization....

10.1016/j.ccell.2019.08.007 article EN cc-by Cancer Cell 2019-10-01

We describe severe and unexpected multisystem toxicity that occurred during a study of the antiviral nucleoside analogue fialuridine (1-(2-deoxy-2-fluoro-β-d-arabinofuranosyl)-5-iodouracil, or FIAU) as therapy for chronic hepatitis B virus infection.

10.1056/nejm199510263331702 article EN New England Journal of Medicine 1995-10-26
Farshad Farshidfar Siyuan Zheng Marie‐Claude Gingras Yulia Newton Juliann Shih and 95 more A. Gordon Robertson Toshinori Hinoue Katherine A. Hoadley Ewan A. Gibb Jason Roszik Kyle R. Covington Chia-Chin Wu Eve Shinbrot Nicolas Stransky Apurva M. Hegde Ju Dong Yang Ed Reznik Sara Sadeghi Chandra Sekhar Pedamallu Akinyemi I. Ojesina Julian M. Hess J. Todd Auman Suhn K. Rhie Reanne Bowlby Mitesh J. Borad Andrew X. Zhu Joshua M. Stuart Chris Sander Rehan Akbani Andrew D. Cherniack Vikram Deshpande Taofic Mounajjed Wai Chin Foo Michael Torbenson David E. Kleiner Peter W. Laird David A. Wheeler Autumn J. McRee Oliver F. Bathe Jesper B. Andersen Nabeel Bardeesy Lewis R. Roberts Lawrence N. Kwong Rehan Akbani Loretta K. Allotey Adrian Ally Domenico Alvaro Jesper B. Andersen Elizabeth L. Appelbaum Arshi Arora J. Todd Auman Miruna Balasundaram Saianand Balu Nabeel Bardeesy Oliver F. Bathe Stephen B. Baylin Rameen Beroukhim Mario Berríos Tom Bodenheimer Lori Boice Arnoud Boot Mitesh J. Borad Jay Bowen Reanne Bowlby Maria Consiglia Bragazzi Denise Brooks Vincenzo Cardinale Rebecca Carlsen Guido Carpino André Lopes Carvalho Roongruedee Chaiteerakij Vishal C. Chandan Andrew D. Cherniack Lynda Chin Juok Cho Gina Choe Eric Chuah Sudha Chudamani Carrie Cibulskis Matthew G. Cordes Kyle R. Covington Daniel Crain Erin Curley Agostino Maria De Rose Timothy Defreitas John A. Demchok Vikram Deshpande Noreen Dhalla Li Ding Kimberley Evason Farshad Farshidfar Ina Felau Martin L. Ferguson Wai Chin Foo Antonio Franchitto Scott Frazer Catrina C. Fronick Lucinda A. Fulton Robert S. Fulton Stacey Gabriel

Cholangiocarcinoma (CCA) is an aggressive malignancy of the bile ducts, with poor prognosis and limited treatment options. Here, we describe integrated analysis somatic mutations, RNA expression, copy number, DNA methylation by The Cancer Genome Atlas a set predominantly intrahepatic CCA cases propose molecular classification scheme. We identified IDH mutant-enriched subtype distinct features including low expression chromatin modifiers, elevated mitochondrial genes, increased number....

10.1016/j.celrep.2017.02.033 article EN cc-by Cell Reports 2017-03-01
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