Uzay E. Emir

ORCID: 0000-0001-5376-0431
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About
Contact & Profiles
Research Areas
  • Advanced MRI Techniques and Applications
  • Functional Brain Connectivity Studies
  • Neuroscience and Neuropharmacology Research
  • Atomic and Subatomic Physics Research
  • Neural dynamics and brain function
  • Advanced Neuroimaging Techniques and Applications
  • Cancer, Hypoxia, and Metabolism
  • Medical Imaging Techniques and Applications
  • Advanced NMR Techniques and Applications
  • Optical Imaging and Spectroscopy Techniques
  • Diet and metabolism studies
  • Mitochondrial Function and Pathology
  • Glioma Diagnosis and Treatment
  • Genetic Neurodegenerative Diseases
  • Transcranial Magnetic Stimulation Studies
  • Lanthanide and Transition Metal Complexes
  • Metabolomics and Mass Spectrometry Studies
  • Visual perception and processing mechanisms
  • MRI in cancer diagnosis
  • NMR spectroscopy and applications
  • Neurological disorders and treatments
  • EEG and Brain-Computer Interfaces
  • Electron Spin Resonance Studies
  • Non-Invasive Vital Sign Monitoring
  • Neuroscience and Neural Engineering

Wellcome Centre for Integrative Neuroimaging
2016-2025

University of Oxford
2015-2025

University of North Carolina at Chapel Hill
2024-2025

Imaging Center
2024

Purdue University West Lafayette
2017-2024

John Radcliffe Hospital
2015-2021

Resonance Research (United States)
2010-2019

University of Minnesota
2010-2019

Purdue University Northwest
2018

Boğaziçi University
2003-2008

Several laboratories have consistently reported small concentration changes in lactate, glutamate, aspartate, and glucose the human cortex during prolonged stimuli. However, whether such correlate with blood oxygenation level—dependent functional magnetic resonance imaging (BOLD-fMRI) signals not been determined. The present study aimed at characterizing relationship between metabolite concentrations BOLD-fMRI a block-designed paradigm of visual stimulation. Functional spectroscopy (fMRS)...

10.1038/jcbfm.2014.233 article EN Journal of Cerebral Blood Flow & Metabolism 2015-01-07

Background Parkinson disease (PD) is characterized by the degeneration of nigrostriatal dopaminergic neurons. However, postmortem evidence indicates that pathology lower brainstem regions, such as pons and medulla, precedes nigral involvement. Consistently, pontomedullary damage was implicated structural PET imaging in early PD. Neurochemical correlates this pathological involvement PD are unknown. Methodology/Principal Finding To map biochemical alterations brains individuals with...

10.1371/journal.pone.0030918 article EN cc-by PLoS ONE 2012-01-25

Purpose To determine the test‐retest reproducibility of neurochemical concentrations obtained with a highly optimized, short‐echo, single‐voxel proton MR spectroscopy (MRS) pulse sequence at 3T and 7T using state‐of‐the‐art hardware. Methods A semi‐LASER (echo time = 26–28 ms) was used to acquire spectra from posterior cingulate cerebellum six healthy volunteers who were scanned four times weekly on both scanners. Spectra quantified LCModel. Results More neurochemicals mean Cramér‐Rao lower...

10.1002/mrm.26022 article EN Magnetic Resonance in Medicine 2015-10-26

Combined fMRI-MRS is a novel method to non-invasively investigate functional activation in the human brain using simultaneous acquisition of hemodynamic and neurochemical measures. The aim current study was quantify neural activity combined at 7 T. BOLD-fMRI semi-LASER localization MRS data were acquired from visual cortex 13 participants during short blocks (64 s) flickering checkerboards. We demonstrate correlation between glutamate time courses (R=0.381, p=0.031). In addition, we show...

10.1016/j.neuroimage.2017.04.030 article EN cc-by NeuroImage 2017-04-19

To determine whether neurochemical concentrations obtained at two MRI sites using clinical 3T scanners can be pooled when a highly optimized, nonvendor short-echo, single-voxel proton MRS pulse sequence is used in conjunction with identical calibration and quantification procedures.A modified semi-LASER (TE = 28 ms) was to acquire spectra from brain regions (cerebellar vermis pons) on Siemens the same B0 B1 protocols different cohorts of healthy volunteers (N 24-33 per site) matched for age...

10.1002/mrm.25295 article EN Magnetic Resonance in Medicine 2014-06-19

Balance of cortical excitation and inhibition (EI) is thought to be disrupted in several neuropsychiatric conditions, yet it not clear how maintained the healthy human brain. When EI balance disturbed during learning memory animal models, can restabilized via formation inhibitory replicas newly formed excitatory connections. Here we assess evidence for such selective rebalancing humans. Using fMRI repetition suppression measure associations We show that expression these reduces over time...

10.1016/j.neuron.2016.02.031 article EN cc-by Neuron 2016-03-17

Abstract Mutations in the isocitrate dehydrogenase genes (IDH1/2) occur often diffuse gliomas, where they are associated with abnormal accumulation of oncometabolite 2-hydroxyglutarate (2-HG). Monitoring 2-HG levels could provide prognostic information this disease, but detection strategies that noninvasive and sufficiently quantitative have yet to be developed. In study, we address need by presenting a proton magnetic resonance spectroscopy (1H-MRS) acquisition scheme uses an ultrahigh...

10.1158/0008-5472.can-15-0934 article EN Cancer Research 2015-12-16

Key points The ability to learn new motor skills is supported by plasticity in the structural and functional organisation of primary cortex human brain. Changes inhibitory signalling GABA are thought be crucial inducing plasticity. This study used magnetic resonance spectroscopy (MRS) quantify concentration during a period learning, as well movement at rest. We report evidence for reduction MRS‐measured specific learning. Further, early learning task was strongly correlated with magnitude...

10.1113/jp276626 article EN cc-by The Journal of Physiology 2018-10-10

Our experiences often overlap with each other, yet we are able to selectively recall individual memories guide decisions and future actions. The neural mechanisms that support such precise memory remain unclear. Here, using ultra-high field 7T MRI reveal two distinct protect from interference. first mechanism involves the hippocampus, where blood-oxygen-level-dependent (BOLD) signal predicts behavioral measures of interference, representations context-dependent pattern separated according...

10.1016/j.neuron.2018.11.042 article EN cc-by Neuron 2018-12-20

Abstract Phosphorus-31 magnetic resonance spectroscopic imaging ( 31 P-MRSI) provides valuable non-invasivein vivoinformation on tissue metabolism but is burdened by poor sensitivity and prolonged scan duration. Ultra-short echo time (UTE) acquisitions minimize signal loss when probing signals with relatively short spin-spin relaxation (T 2 ), while also preventing first-order dephasing. Here, a three-dimensional (3D) UTE sequence rosette k-space trajectory (PETALUTE) applied to P-MRSI at...

10.1038/s41598-025-90630-y article EN cc-by Scientific Reports 2025-02-22

Increased sensitivity and chemical shift dispersion at ultra‐high magnetic fields enable the precise quantification of an extended range brain metabolites from 1 H MRS. However, all previous neurochemical profiling studies using single‐voxel MRS 7 T have been limited to data acquired occipital lobe with half‐volume coils. The challenges human include short 2 complex B distribution that imposes limitations on maximum achievable strength. In this study, feasibility acquiring quantifying...

10.1002/nbm.1727 article EN NMR in Biomedicine 2011-07-15

Abstract In this study, ascorbate (Asc) and glutathione (GSH) concentrations were quantified noninvasively using double‐edited 1 H MRS at 4 T in the occipital cortex of healthy young [age (mean ± standard deviation) = 20.4 1.4 years] elderly (age 76.6 6.1 years) human subjects. Elderly subjects had a lower GSH concentration than younger ( p < 0.05). The Asc was not significantly associated with age. Furthermore, lactate (Lac) higher Lower Lac are indications defective protection against...

10.1002/nbm.1646 article EN NMR in Biomedicine 2011-01-12

The purpose of this work was to harmonize data acquisition and post‐processing single voxel proton MRS ( 1 H‐MRS) at 7 T, determine metabolite concentrations the accuracy reproducibility levels in adult human brain. This study performed compliance with local institutional ethics committees. same seven subjects were each examined twice using four different T MR systems from two vendors an identical semi‐localization by adiabatic selective refocusing spectroscopy sequence. Neurochemical...

10.1002/nbm.3252 article EN NMR in Biomedicine 2015-01-08

Objective To investigate whether early neurochemical abnormalities are detectable by high‐field magnetic resonance spectroscopy (MRS) in individuals with spinocerebellar ataxias (SCAs) 1, 2, 3, and 6, including patients without manifestation of ataxia. Methods A cohort 100 subjects (N = 18–21 each SCA group, premanifest mutation carriers; mean score on the Scale for Assessment Rating Ataxia [SARA] <10 all genotypes, 22 matched controls) was scanned at 7 Tesla to obtain profiles cerebellum...

10.1002/ana.25212 article EN Annals of Neurology 2018-03-25

Learning a novel motor skill is dependent both on regional changes within the primary cortex (M1) contralateral to active hand and also modulation between anatomically distant but functionally connected brain regions. Interregional are particularly important in functional recovery after stroke, when critical plastic underpinning behavioral improvements observed ipsilesional contralesional M1s. It increasingly understood that reduction GABA M1 necessary allow learning of task. However,...

10.1523/jneurosci.2853-17.2018 article EN cc-by Journal of Neuroscience 2018-07-20

Spinocerebellar ataxias (SCAs) belong to polyglutamine repeat disorders and are characterized by a predominant atrophy of the cerebellum pons. Proton magnetic resonance spectroscopy ((1) H MRS) using an optimized semiadiabatic localization adiabatic selective refocusing (semi-LASER) protocol was performed at 3 T determine metabolite concentrations in cerebellar vermis pons cohort patients with SCA1 (n=16), SCA2 (n=12), SCA3 (n=21), SCA7 (n=12) healthy controls (n=33). Compared controls,...

10.1002/mds.26181 article EN Movement Disorders 2015-03-15

Multiple data formats in the MRS community currently hinder sharing and integration. NIfTI-MRS is proposed as a standard spectroscopy format, implemented an extension to Neuroimaging informatics technology initiative (NIfTI) format. This standardized format can facilitate algorithm development well ease integration of analysis alongside other imaging modalities.

10.1002/mrm.29418 article EN cc-by Magnetic Resonance in Medicine 2022-09-11

1H magnetic resonance spectroscopy (MRS) is unique among imaging modalities because signals from several metabolites are measured during a single examination period. Each metabolite reflects distinct intracellular process. Furthermore transverse (T2) relaxation times probe the viability of cell microenvironment, e.g., viscosity cellular fluids, microscopic susceptibility distribution within cells, and iron content. In this study, T2s brain were in occipital lobe eighteen young fourteen...

10.1371/journal.pone.0077572 article EN cc-by PLoS ONE 2013-10-02
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