Amanda Clarke

ORCID: 0000-0001-5701-7733
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About
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Research Areas
  • Palliative Care and End-of-Life Issues
  • Geriatric Care and Nursing Homes
  • Musculoskeletal pain and rehabilitation
  • Aging and Gerontology Research
  • Mental Health and Patient Involvement
  • Pain Management and Opioid Use
  • Empathy and Medical Education
  • Migration, Aging, and Tourism Studies
  • Cancer Genomics and Diagnostics
  • Healthcare innovation and challenges
  • Intergenerational Family Dynamics and Caregiving
  • Grief, Bereavement, and Mental Health
  • Obesity, Physical Activity, Diet
  • Pain Management and Placebo Effect
  • Technology Use by Older Adults
  • Interprofessional Education and Collaboration
  • Obesity and Health Practices
  • Stroke Rehabilitation and Recovery
  • Family and Patient Care in Intensive Care Units
  • Patient-Provider Communication in Healthcare
  • Prostate Cancer Diagnosis and Treatment
  • Fibromyalgia and Chronic Fatigue Syndrome Research
  • Cancer survivorship and care
  • Cholangiocarcinoma and Gallbladder Cancer Studies
  • Nursing education and management

Northumbria University
2014-2024

Maidstone Hospital
2017-2024

University of Newcastle Australia
2023

Newcastle University
2023

National Institutes of Health
2014-2015

University of British Columbia
2014

Teesside University
2013

University of Aberdeen
2009-2012

Centre of Advanced Studies
2011

Mount Vernon Hospital
2011

Adam J. Bass Vésteinn Thórsson Ilya Shmulevich Sheila M. Reynolds Michael Miller and 95 more Brady Bernard Toshinori Hinoue Peter W. Laird Christina Curtis Hui Shen Daniel J. Weisenberger Nikolaus Schultz Ronglai Shen Nils Weinhold David P. Kelsen Reanne Bowlby Andy Chu L. Sylvia Andrew J. Mungall A. Gordon Robertson Payal Sipahimalani Andrew D. Cherniack Gad Getz Yingchun Liu Michael S. Noble Chandra Sekhar Pedamallu Carrie Sougnez Amaro Taylor‐Weiner Rehan Akbani Ju‐Seog Lee Wenbin Liu Gordon B. Mills Da Yang Wei Zhang Angeliki Pantazi Michael Parfenov Margaret L. Gulley M. Blanca Piazuelo Barbara Schneider Jihun Kim Alex Boussioutas Margi Sheth John A. Demchok Charles S. Rabkin Joseph Willis Sam Ng Katherine S. Garman David G. Beer Arjun Pennathur Benjamin J. Raphael Hsin-Ta Wu Robert D. Odze Hark K. Kim Jay Bowen Kristen Leraas Tara M. Lichtenberg Stephanie Weaver Michael D. McLellan Maciej Wiznerowicz Ryo Sakai Michael S. Lawrence Kristian Cibulskis Lee Lichtenstein Sheila Fisher Stacey Gabriel Eric S. Lander Li Ding Beifang Niu Adrian Ally Miruna Balasundaram İnanç Birol Denise Brooks Yaron S.N. Butterfield Rebecca Carlsen Justin Chu Eric Chuah Hye-Jung Chun Amanda Clarke Noreen Dhalla Ranabir Guin Robert A. Holt Steven J.M. Jones Darlene Lee Haiyan A. Li Emilia L. Lim Yussanne Ma Marco A. Marra Michael Mayo Richard A. Moore Karen Mungall Ka Ming Nip Jacqueline E. Schein Angela Tam Nina Thiessen Rameen Beroukhim Scott L. Carter Andrew D. Cherniack Juok Cho Daniel DiCara Scott Frazer

Gastric cancer is a leading cause of deaths, but analysis its molecular and clinical characteristics has been complicated by histological aetiological heterogeneity. Here we describe comprehensive evaluation 295 primary gastric adenocarcinomas as part The Cancer Genome Atlas (TCGA) project. We propose classification dividing into four subtypes: tumours positive for Epstein–Barr virus, which display recurrent PIK3CA mutations, extreme DNA hypermethylation, amplification JAK2, CD274 (also...

10.1038/nature13480 article EN cc-by-nc-sa Nature 2014-07-23
Rehan Akbani Kadir C. Akdemir Bülent Arman Aksoy Monique Albert Adrian Ally and 95 more Samirkumar B. Amin Harindra Arachchi Arshi Arora J. Todd Auman Brenda Ayala Julien Baboud Miruna Balasundaram Saianand Balu Nandita Barnabas Thomas John Pam Bartlett Boris C. Bastian Stephen B. Baylin Madhusmita Behera D. K. Belyaev Christopher C. Benz Brady Bernard Rameen Beroukhim Natalie Bir Aaron D. Black Tom Bodenheimer Lori Boice Genevieve M. Boland R. Bono Moiz Bootwalla Marcus Bosenberg Jay Bowen Reanne Bowlby Christopher A. Bristow Laura Brockway-Lunardi Denise Brooks Jakub Brzezinski Wiam Bshara Elizabeth Buda William R. Burns Yaron S.N. Butterfield M. Button Tiffany L. Calderone Giancarlo Antonini Cappellini Candace Carter Scott L. Carter Lynn Cherney Andrew D. Cherniack Aaron Chevalier Lynda Chin Juok Cho Raymond J. Cho Yoon‐La Choi Andy Chu Sudha Chudamani Kristian Cibulskis Giovanni Ciriello Amanda Clarke Stephen W. Coons Leslie Cope Daniel Crain Erin Curley Ludmila Danilova Stefania D’Atri Tanja M. Davidsen Michael A. Davies Keith A. Delman John A. Demchok Qing Deng Yonathan Lissanu Deribe Noreen Dhalla Rajiv Dhir Daniel DiCara М С Диникин Michael Dubina J. Stephen Ebrom Sophie Egea Greg Eley Jay Engel Jennifer Eschbacher Konstantin Fedosenko Ina Felau Timothy R. Fennell Martin L. Ferguson Sheila Fisher Keith T. Flaherty Scott Frazer Jessica Frick Victoria Fulidou Stacey Gabriel Jianjiong Gao Johanna Gardner Levi A. Garraway Julie M. Gastier-Foster Carmelo Gaudioso Nils Gehlenborg Giannicola Genovese Mark Gerken Hui Shen Gad Getz

10.1016/j.cell.2015.05.044 article EN publisher-specific-oa Cell 2015-06-01
Adam Abeshouse Jaeil Ahn Rehan Akbani Adrian Ally Samirkumar B. Amin and 95 more Chris Andry Matti Annala Armen Aprikian Joshua Armenia Arshi Arora J. Todd Auman Miruna Balasundaram Saianand Balu Christopher E. Barbieri Thomas Bauer Christopher C. Benz Alain Bergeron Rameen Beroukhim Mario Berríos Adrian Bivol Tom Bodenheimer Lori Boice Arnoud Boot Rodolfo Borges dos Reis Paul C. Boutros Jay Bowen Reanne Bowlby Jeffrey M. Boyd Robert K. Bradley Anne Breggia Fadi Brimo Christopher A. Bristow Denise Brooks Bradley M. Broom Alan H. Bryce Glenn J. Bubley Eric Burks Yaron S.N. Butterfield M. Button David Canes Carlos Gilberto Carlotti Rebecca Carlsen Michel Carmel Peter R. Carroll Scott L. Carter Richard W. Cartun Brett S. Carver June M. Chan Matthew T. Chang Yu Chen Andrew D. Cherniack Simone Chevalier Lynda Chin Juok Cho Andy Chu Eric Chuah Sudha Chudamani Kristian Cibulskis Giovanni Ciriello Amanda Clarke Matthew R. Cooperberg Niall M. Corcoran Anthony J. Costello Janet E. Cowan Daniel Crain Erin Curley Kerstin A. David John A. Demchok Francesca Demichelis Noreen Dhalla Rajiv Dhir Alexandre A. Doueik Bettina F. Drake Heidi Dvinge Natalya Dyakova Ina Felau Martin L. Ferguson Scott Frazer Stephen J. Freedland Yao Fu Stacey Gabriel Jianjiong Gao Johanna Gardner Julie M. Gastier-Foster Nils Gehlenborg Mark Gerken Mark Gerstein Gad Getz Andrew K. Godwin Anuradha Gopalan Markus Graefen Kiley Graim Thomas Gribbin Ranabir Guin Manaswi Gupta Angela Hadjipanayis Syed Haider Lucie Hamel D. Neil Hayes David I. Heiman

10.1016/j.cell.2015.10.025 article EN publisher-specific-oa Cell 2015-11-01
Nishant Agrawal Rehan Akbani Bülent Arman Aksoy Adrian Ally Harindra Arachchi and 95 more L. Sylvia J. Todd Auman Miruna Balasundaram Saianand Balu Stephen B. Baylin Madhusmita Behera Brady Bernard Rameen Beroukhim Justin A. Bishop Aaron D. Black Tom Bodenheimer Lori Boice Arnoud Boot Jay Bowen Reanne Bowlby Christopher A. Bristow Robin Brookens Denise Brooks Robert Bryant Elizabeth Buda Yaron S.N. Butterfield Tobias Carling Rebecca Carlsen Scott L. Carter Sally E. Carty Timothy A. Chan Amy Y. Chen Andrew D. Cherniack Dorothy Cheung Lynda Chin Juok Cho Andy Chu Eric Chuah Kristian Cibulskis Giovanni Ciriello Amanda Clarke Gary L. Clayman Leslie Cope John A. Copland Kyle Covington Ludmila Danilova Tanja M. Davidsen John A. Demchok Daniel DiCara Noreen Dhalla Rajiv Dhir Sheliann S. Dookran Gideon Dresdner Jonathan Eldridge Greg Eley Adel K. El‐Naggar Stephanie Eng James A. Fagin Timothy R. Fennell Robert L. Ferris Sheila Fisher Scott Frazer Jessica Frick Stacey Gabriel Ian Ganly Jianjiong Gao Levi A. Garraway Julie M. Gastier-Foster Gad Getz Nils Gehlenborg Ronald Ghossein Richard A. Gibbs Thomas J. Giordano Karen Gomez-Hernandez Jonna Grimsby Benjamin Groß Ranabir Guin Angela Hadjipanayis Hollie A. Harper D. Neil Hayes David I. Heiman James G. Herman Katherine A. Hoadley Matan Hofree Robert A. Holt Alan P. Hoyle Franklin W. Huang Mei Huang Carolyn M. Hutter Trey Ideker Lisa Iype Anders J. Skanderup Joshua M. Stuart Corbin D. Jones Steven J.M. Jones L. Sylvia Electron Kebebew Fadlo R. Khuri Jaegil Kim Roger Kramer

<h2>Summary</h2> Papillary thyroid carcinoma (PTC) is the most common type of cancer. Here, we describe genomic landscape 496 PTCs. We observed a low frequency somatic alterations (relative to other carcinomas) and extended set known PTC driver include <i>EIF1AX</i>, <i>PPM1D</i>, <i>CHEK2</i> diverse gene fusions. These discoveries reduced fraction cases with unknown oncogenic from 25% 3.5%. Combined analyses variants, expression, methylation demonstrated that different groups lead...

10.1016/j.cell.2014.09.050 article EN cc-by-nc-nd Cell 2014-10-01
Adrian Ally Miruna Balasundaram Rebecca Carlsen Eric Chuah Amanda Clarke and 95 more Noreen Dhalla Robert A. Holt Steven J.M. Jones Darlene Lee Yussanne Ma Marco A. Marra Michael Mayo Richard A. Moore Andrew J. Mungall Jacqueline E. Schein Payal Sipahimalani Angela Tam Nina Thiessen Dorothy Cheung Tina Wong Denise Brooks A. Gordon Robertson Reanne Bowlby Karen Mungall Sara Sadeghi Xi Liu Kyle Covington Eve Shinbrot David A. Wheeler Richard A. Gibbs Lawrence A. Donehower Linghua Wang Jay Bowen Julie M. Gastier‐Foster Mark Gerken Carmen Helsel Kristen Leraas Tara M. Lichtenberg Nilsa C. Ramirez Lisa Wise Erik Zmuda Stacey Gabriel Matthew Meyerson Carrie Cibulskis Bradley A. Murray Juliann Shih Rameen Beroukhim Andrew D. Cherniack Steven E. Schumacher Gordon Saksena Chandra Sekhar Pedamallu Lynda Chin Gad Getz Michael S. Noble Hailei Zhang David I. Heiman Juok Cho Nils Gehlenborg Gordon Saksena Douglas Voet Pei Lin Scott Frazer Timothy Defreitas Thomas J. Giordano Michael S. Lawrence Jaegil Kim Chad J. Creighton Donna M. Muzny HarshaVardhan Doddapaneni Hai Hu Min Wang Donna Morton Viktoriya Korchina Yi Han Huyen Dinh Lora Lewis Michelle Bellair Xiuping Liu Jireh Santibanez Robert Glenn Charles Lee Walker Hale Joel S. Parker Matthew D. Wilkerson D. Neil Hayes Sheila M. Reynolds Ilya Shmulevich Wei Zhang Yuexin Liu Lisa Iype Hala R. Makhlouf Michael Torbenson Sanjay Kakar Matthew M. Yeh Dhanpat Jain David E. Kleiner Dhanpat Jain Renumathy Dhanasekaran Hashem B. El‐Serag Sun Young Yim

Liver cancer has the second highest worldwide mortality rate and limited therapeutic options. We analyzed 363 hepatocellular carcinoma (HCC) cases by whole-exome sequencing DNA copy number analyses, we 196 HCC methylation, RNA, miRNA, proteomic expression also. mutation analysis identified significantly mutated genes, including LZTR1, EEF1A1, SF3B1, SMARCA4. Significant alterations or downregulation hypermethylation in genes likely to result metabolic reprogramming (ALB, APOB, CPS1) were...

10.1016/j.cell.2017.05.046 article EN cc-by-nc-nd Cell 2017-06-01
Benjamin J. Raphael Ralph H. Hruban Andrew J. Aguirre Richard A. Moffitt Jen Jen Yeh and 95 more Chip Stewart A. Gordon Robertson Andrew D. Cherniack Manaswi Gupta Gad Getz Stacey Gabriel Matthew Meyerson Carrie Cibulskis Suzanne S. Fei Toshinori Hinoue Hui Shen Peter W. Laird Shiyun Ling Yiling Lu Gordon B. Mills Rehan Akbani Phillipe Loher Eric Londin Isidore Rigoutsos Aristeidis G. Telonis Ewan A. Gibb Anna Goldenberg Aziz M. Mezlini Katherine A. Hoadley Eric A. Collisson Eric S. Lander Bradley A. Murray Julian M. Hess Mara Rosenberg Louis Bergelson Hailei Zhang Juok Cho Grace Tiao Jaegil Kim Dimitri Livitz Ignaty Leshchiner Brendan Reardon Eliezer M. Van Allen Atanas Kamburov Rameen Beroukhim Gordon Saksena Steven E. Schumacher Michael S. Noble David I. Heiman Nils Gehlenborg Jaegil Kim Michael S. Lawrence Volkan Adsay Gloria M. Petersen David S. Klimstra Nabeel Bardeesy Mark D.M. Leiserson Reanne Bowlby L. Sylvia İnanç Birol Karen Mungall Sara Sadeghi John N. Weinstein Paul T. Spellman Yuexin Liu Laufey T. Ámundadóttir Joel E. Tepper Aatur D. Singhi Rajiv Dhir Paul Drwiega Thomas C. Smyrk Lizhi Zhang Paula Kim Jay Bowen Jessica Frick Julie M. Gastier‐Foster Mark Gerken Kevin Lau Kristen Leraas Tara M. Lichtenberg Nilsa C. Ramirez Jeremy Renkel Mark E. Sherman Lisa Wise Peggy Yena Erik Zmuda Juliann Shih Adrian Ally Miruna Balasundaram Rebecca Carlsen Andy Chu Eric Chuah Amanda Clarke Noreen Dhalla Robert A. Holt Steven J.M. Jones Darlene Lee Yussanne Ma Marco A. Marra Michael Mayo

10.1016/j.ccell.2017.07.007 article EN cc-by-nc-nd Cancer Cell 2017-08-01

Summary • Recent policy statements have stressed the need for fundamental changes to NHS, especially hospital care of older people. Person‐centred underpins such changes. If practitioners are deliver person‐centred care, then they learn more about patient as an individual. One way that this might be achieved is through biographical approaches. This paper describes findings a developmental study undertaken over 6‐month period investigate introduction approach on unit in NHS hospital. It...

10.1046/j.1365-2702.2003.00784.x article EN Journal of Clinical Nursing 2003-08-12

This paper reports a literature review on the topic of ethical issues in in-depth interviews. The returned three types article: general discussion, particular studies, and studies interview-based research ethics. Whilst many discussed these articles are generic to ethics, such as confidentiality, they often had manifestations this type research. For example, privacy was significant problem interviews sometimes probe unexpected areas. similar reasons, it is difficult give full information...

10.1177/174701610900500203 article EN Research Ethics 2009-06-01

Aims and objectives. This paper aims to: • Consider the major challenges to involving people with dementia in qualitative research. Critique a process consent framework. Demonstrate need for nurses researchers explore these issues research practice dementia. impact of Mental Capacity Act 2005 on To achieve its aims, authors will draw current literature use examples which explores life story work by taking approach. Background. There is acceptance that should consider ways actively as...

10.1111/j.1365-2702.2009.03136.x article EN Journal of Clinical Nursing 2010-06-14

ABSTRACT ‘Active ageing’ is a key concept in current policy and research on ageing yet under-analysed or interpreted largely within an economic framework. This paper explores active the broader context of older people's lives. Drawing series biographical interviews with 23 people aged 60–96 years, discussion focuses theme future hopes concerns. Exhortations for ‘active may be challenged by lifelong unwillingness to look forward plan ahead. Nevertheless, findings show that fears limited...

10.1017/s0144686x06005824 article EN Ageing and Society 2007-06-18

Person-centred care has been linked with quality of but difficulties remain in person-centred being implemented practice. This study explores the use life story work to enhance people dementia.The investigates how is: understood and developed practice; experienced by all participants affects delivery outcomes care.The experience older dementia, family carers staff using was explored within an NHS Health Social Care Trust. A multiple case design adopted a constructivist approach....

10.1111/j.1748-3743.2010.00219.x article EN International Journal of Older People Nursing 2010-05-12

Young people (18-25 years) during the adolescence/adulthood transition are vulnerable to weight gain and notoriously hard reach. Despite increased levels of overweight/obesity in this age group, physical activity behaviour, a major contributor obesity, is poorly understood. The purpose study was explore (PA) behaviour among 18-25 year olds with influential factors including attitudes, motivators barriers.An explanatory mixed method design, based on health Behaviour Change Theories used....

10.1186/1471-2458-12-640 article EN cc-by BMC Public Health 2012-08-10

Background: Young people (18–25 years) during the adolescence/adulthood transition are vulnerable to weight gain and notoriously hard reach. Despite increased levels of overweight/obesity in this age group, diet behaviour, a major contributor obesity, is poorly understood. The purpose study was explore behaviour among 18–25 year olds with influential factors including attitudes, motivators barriers. Methods: An explanatory mixed method design, based on health Behaviour Change Theories used....

10.1080/21642850.2014.931232 article EN cc-by-nc Health Psychology and Behavioral Medicine 2014-01-01

To present findings from the first stage of an exploratory study investigating nurses' understanding and facilitation person-centred care within acute medical ward.The term 'person-centred care' is used frequently in healthcare policy practice. However, ways which concept translated into everyday nursing continue to a challenge. Person-centred has been explored extensively older people, people with dementia learning disability. Little empirical research conducted ward settings. This starts...

10.1111/jocn.12662 article EN Journal of Clinical Nursing 2014-07-22

Background Over 50% of community-dwelling older adults experience chronic pain, which threatens their quality life. Of importance to pain management is people's interaction with health professionals that, if unsatisfactory, may impair the outcome. Aims To add limited research specific people living in community, we explored how they perceive experiences interacting professionals, seeking factors that might optimise these interactions. Methods Purposive sampling was used recruit men and women...

10.1371/journal.pone.0105450 article EN cc-by PLoS ONE 2014-09-04

Introduction Life story work is increasingly being used with people dementia; this offers a critical appraisal of some challenges that may be faced in practice. Design and methods An in-depth case study analysis was undertaken to understand the experiences dementia, family carers care staff using life an NHS Mental Health Social Care Trust. Data collection included semi-structured interviews, observation, conversations field notes. Findings Private memories were sometimes recalled by person...

10.1177/1471301213495864 article EN Dementia 2013-07-26

10.1016/j.jpainsymman.2010.02.027 article EN publisher-specific-oa Journal of Pain and Symptom Management 2010-09-03

To explore compassion from the perceptions of individuals with personal experience nursing care.Although is considered integral to professional nursing, increasing reports care experiences illustrating a lack have challenged this. Despite political and guidance reaffirm as an underpinning philosophy contemporary practice, this provides limited insight into what may involve. Contemporary evidence inform understanding predominately arises perspective. This knowledge gap supported rationale...

10.1111/jan.13987 article EN Journal of Advanced Nursing 2019-02-28

This paper provides a concept analysis of respite care for frail older people and their family carers. The authors re-examine the broader conceptualization delineated by Nolan & Grant, namely, users' needs information, education support about care, based on review recent literature user focus group study. work was undertaken Sheffield arm ACTION Project research team. is 36-month project (1997-1999), involving Northern Ireland, Republic Portugal, Sweden England largest nurse-led to have...

10.1046/j.1365-2648.1999.01215.x article EN Journal of Advanced Nursing 1999-12-01

Aim: To develop and evaluate an education programme to help older people find out about treatment care choices at the end of life. Design: An action research approach was used booklet end-of-life care. A qualitative evaluation ran alongside project. It comprised a combination methods, including face-to-face telephone interviews questionnaires with those who took part in small group discussions. Sample: The team consisted five academic researchers eight recruited from voluntary groups...

10.12968/ijpn.2006.12.5.21174 article EN International Journal of Palliative Nursing 2006-05-01

Over 50% of older adults experience chronic pain. Poorly managed pain threatens independent functioning, limits social activities and detrimentally affects emotional wellbeing. Yet, is not fully understood from adults’ perspectives; subsequently, management in later life necessarily based on their priorities or needs. This paper reports a qualitative exploration accounts living with pain, focusing how they describe view to informing approaches its assessment. Cognitively intact men women...

10.1186/1471-2318-12-78 article EN cc-by BMC Geriatrics 2012-12-01

Background Health professionals continue to seek ways promote positive communication and self‐worth when supporting people living with dementia. The value of creative writing techniques as part reflective practice in nursing caring for older dementia needs further exploration. Aim To introduce health dementia‐related practice. Method A local experienced author facilitated workshops nine preregistration students (general mental health), one family carer five care working Findings student...

10.1111/opn.12113 article EN International Journal of Older People Nursing 2016-01-20
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