A5101544921- Sugarcane Cultivation and Processing
- Plant Pathogenic Bacteria Studies
- Biofuel production and bioconversion
- Plant Virus Research Studies
- Plant-Microbe Interactions and Immunity
- Plant Pathogens and Fungal Diseases
- Plant and Fungal Interactions Research
- Plant Disease Resistance and Genetics
- Natural Products and Biological Research
- Plant responses to water stress
- Legume Nitrogen Fixing Symbiosis
- Fungal and yeast genetics research
- Insect-Plant Interactions and Control
- Mycorrhizal Fungi and Plant Interactions
- Plant tissue culture and regeneration
- CRISPR and Genetic Engineering
- Fermentation and Sensory Analysis
- Plant Stress Responses and Tolerance
- Plant pathogens and resistance mechanisms
- Genomics and Phylogenetic Studies
- Plant Gene Expression Analysis
- Plant Micronutrient Interactions and Effects
- Cocoa and Sweet Potato Agronomy
- Carbon and Quantum Dots Applications
- Ecology and Vegetation Dynamics Studies
Guangxi University
2016-2025
State Key Laboratory For Conservation and Utilization of Subtropical Agro-Bioresources
2014-2025
Lanzhou Jiaotong University
2021-2023
Xanthomonas campestris pathovar (Xcc) is the causative agent of crucifer black rot disease, which causes severe losses in agricultural yield world-wide. This bacterium a model organism for studying plant-bacteria interactions. We sequenced complete genome Xcc 8004 (5,148,708 bp), highly conserved relative to that ATCC 33913. Comparative genomics analysis indicated that, addition significant genomic-scale rearrangement cross replication axis between two IS1478 elements, loss and acquisition...
Landslides are destructive to property, infrastructure and people in potential landslide zones. Identifying landslides is an important step preparedness will help develop sustainable risk management. Interferometric synthetic aperture radar (InSAR) susceptibility assessment (LSA) have poor reliability individually identifying This study proposes a threshold model for zones that fuses the InSAR two-dimensional (vertical direction east-west direction) deformation rates LSA results. The rate...
Abstract Sugarcane is a vital crop with significant economic and industrial value. However, the cultivated sugarcane’s ultra-complex genome still needs to be resolved due its high ploidy extensive recombination between two subgenomes. Here, we generate chromosomal-scale, haplotype-resolved assembly for hybrid sugarcane cultivar ZZ1. This contains 10.4 Gb genomic sequences 68,509 annotated genes defined alleles in sub-genomes distributed 99 original 15 recombined chromosomes. RNA-seq data...
The prediction of land subsidence is a crucial step for early warning urban infrastructure damage and timely remedy. However, the performance most mathematical empirical models often compromised by their large number parameters, complex operational processes sparsely measured values. Currently, traditional neural network are popular effective, but they cannot accurately discover characteristic changes time series data. In this paper, long short-term memory (LSTM) was proposed to predict...
The lemon (Citrus limon; family Rutaceae) is one of the most important and popular fruits worldwide. Lemon also tolerates huanglongbing (HLB) disease, which a devastating citrus disease. Here we produced gap-free haplotype-resolved chromosome-scale genome assembly by combining Pacific Biosciences circular consensus sequencing, Oxford Nanopore 50-kb ultra-long, high-throughput chromatin conformation capture technologies. contained nine-pair chromosomes with contig N50 35.6 Mb zero gaps, while...
Sugarcane smut disease, caused by the basidiomycetous fungus Sporisorium scitamineum, is one of major threats to sugarcane industry. The potential method control disease in cultivation resistant varieties (Bhuiyan et al., 2021). However, development smut-resistant still faces big challenges due allopolyploid nature and complex genetic background sugarcane. To date, functional genomics far behind those crops, for example, wheat rice, few genes have been identified that can be used as...
ABSTRACT Pokkah boeng disease (PBD), a common and highly destructive of sugarcane, is mainly caused by Fusarium sacchari . Breeding sugarcane resistant to PBD challenging due the limited availability immune or germplasm resources. Host‐induced gene silencing (HIGS) based on RNA interference (RNAi) promising disease‐control method that offers strong disease‐targeting ability with low environmental impact. This study found either three FsCYP51 genes ( FsCYP51A , FsCYP51B FsCYP51C )...
Background Pokkah boeng disease caused by the Fusarium species complex results in significant yield losses sugarcane. Thus, rapid and accurate detection identification of pathogen is urgently required to manage prevent spreading sugarcane pokkah boeng. Methods A total 101 isolates were recovered from samples collected five major production areas China throughout 2012 2013. The causal was identified morphological observation, pathogenicity test, phylogenetic analysis based on fungus-conserved...
Intercropping of soybean and sugarcane is an important strategy to promote sustainable development the industry. In fact, our understanding interaction between rhizosphere bacterial communities in intercropping system still evolving; particularly, influence different varieties on process with soybean, needs further research. Here, we evaluated response ZZ1 ZZ9 root community during soybean. We found that when was intercropped diversity increased significantly as compared used. played a major...
Xanthomonas campestris pathovar (Xcc) is the causal agent of black rot disease crucifers worldwide. The molecular genetic diversity and host specificity Xcc are poorly understood.We constructed a microarray based on complete genome sequence strain 8004 investigated by array-based comparative hybridization analyses 18 virulent strains. results demonstrate that core comprising 3,405 4,186 coding sequences (CDSs) spotted array conserved flexible gene pool with 730 CDSs absent/highly divergent...
Abstract Cassava ( Manihot esculenta ) is valued mainly for high content starch in its roots. Our understanding of mechanisms promoting accumulation the roots is, however, still very limited. Two field-grown cassava cultivars, Huanan 124(H124) with low root and Fuxuan 01(F01) starch, were characterised comparatively at four main growth stages. Changes key sugars leaves, stems seemed not to be strongly associated final amount accumulated However, when compared H124, F01 exhibited a more...
Sugarcane (Saccharum officinarum L.) is an important crop for sugar production and bioenergy worldwide. In this study, we performed transcriptome sequencing six contrasting sugarcane genotypes involved in leaf abscission, tolerance to pokkah boeng disease drought stress. More than 465 million high-quality reads were generated, which de novo assembled into 93,115 unigenes. Based on a similarity search, 43,526 (46.74%) unigenes annotated against at least one of the public databases. Functional...
Abstract Background Viruses are infectious pathogens, and plant virus epidemics can have devastating consequences to crop yield quality. Sugarcane mosaic (SCMV, belonging family Potyviridae) is one of the leading pathogens that affect sugarcane every year. To combat pathogens’ attack, plants generate reactive oxygen species (ROS) as first line defense whose sophisticated balance achieved through well-organized antioxidant scavenging pathways. Results In this study, we investigated changes...
One of the causative agents pokkah boeng disease (PBD), which affects sugarcane crops globally, is fungus Fusarium sacchari. These fungal infections reduce sugar quality and yield, resulting in severe economic losses. Effector proteins play important roles interactions between pathogenic fungi plants. Here, we used bioinformatic prediction approaches to identify 316 candidate secreted effector (CSEPs) complete genome F. In total, 95 CSEPs contained known conserved structures, representing 40...
The MarR family of transcriptional regulators bacteria are involved in the regulation many cellular processes, including pathogenesis. In this work, we have demonstrated genetically that hpaR (hpa, hrp associated), which encodes a putative regulator, is hypersensitive response (HR), pathogenicity, and extracellular protease production phytopathogenic bacterium Xanthomonas campestris pathovar campestris. A mutation resulted complete loss virulence host plant cabbage, delayed weakened HR...
Sugarcane mosaic disease is mainly caused by the sugarcane virus (SCMV), which can significantly reduce stalk yield and sucrose content of in field. Coat protein mediated protection (CPMP) an effective strategy to improve resistance. A 2-year field study was conducted compare five independent transgenic lines carrying SCMV-CP gene (i.e., B2, B36, B38, B48, B51) with wild-type parental clone Badila (WT). Agronomic performance, resistance SCMV infection, transgene stability were evaluated...
Sugarcane diseases are caused by various pathogens, and rapid accurate identification of these has many challenges. Detection sugarcane using conventional assays often handicapped their low-throughput, high-cost, low-sensitivity nature. Here, we report a novel method for the multiplexed visual detection pathogens CRISPR/Cas12a coupled with labeled loop-mediated isothermal amplification (Cas-mCfLAMP). This labels product during LAMP amplification, relieving high dependence on specific CrRNAs...
Fusarium sacchari is a causal agent of sugarcane Pokkah boeng, an important fungal disease that causes considerable reduction in yield and sugar content susceptible varieties worldwide. Despite its importance, the factors regulate virulence this pathogen remain largely unknown. In our previous study, mapping insertional mutant defect resulted identification cutinase G-box binding protein gene, designated FsCGBP, encodes C2H2-type transcription factor (TF). FsCGBP was shown to localize...
Fusarium sacchari is one of the primary causal agents Pokkah boeng disease (PBD), an important sugarcane worldwide. The acyl-CoA dehydrogenases (ACADs) constitute a family flavoenzymes involved in β-oxidation fatty acids and amino acid catabolism mitochondria. However, role ACADs pathogenesis F. unclear. Here, 14 ACAD-encoding genes (FsACAD-1–FsACAD-14) were identified by screening entire genome sequence sacchari. FsACAD are distributed across seven chromosomes classified into clades based...