Yan Zhang

ORCID: 0000-0001-9913-6490
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About
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Research Areas
  • Epigenetics and DNA Methylation
  • RNA modifications and cancer
  • Cancer-related gene regulation
  • Cancer-related molecular mechanisms research
  • Photosynthetic Processes and Mechanisms
  • Plant Molecular Biology Research
  • RNA Research and Splicing
  • DNA Repair Mechanisms
  • Liver Disease Diagnosis and Treatment
  • Diet, Metabolism, and Disease
  • Renal Transplantation Outcomes and Treatments
  • Plant Reproductive Biology
  • Cancer, Lipids, and Metabolism
  • Genomics and Chromatin Dynamics
  • Plant tissue culture and regeneration
  • Genetic and phenotypic traits in livestock
  • Genetic Syndromes and Imprinting
  • Colorectal Cancer Treatments and Studies
  • Lung Cancer Research Studies
  • Metabolism and Genetic Disorders
  • Lung Cancer Treatments and Mutations
  • Machine Learning in Bioinformatics
  • Genetic Associations and Epidemiology
  • Endometriosis Research and Treatment
  • Developmental Biology and Gene Regulation

Sichuan University
2018-2025

West China Second University Hospital of Sichuan University
2018-2025

Affiliated Hospital of Guizhou Medical University
2023

Heilongjiang Provincial Academy of Agricultural Sciences
2023

Nanchang University
2014-2023

Tang Du Hospital
2022-2023

Guiyang Medical University
2023

Xi'an Technological University
2023

German Cancer Research Center
2016-2022

Tianjin Chengjian University
2022

Abstract DNA methylation (DNAm) has been revealed to play a role in various diseases. Here we performed epigenome-wide screening and validation identify mortality-related DNAm signatures general population-based cohort with up 14 years follow-up. In the discovery panel case-cohort approach, 11,063 CpGs reach genome-wide significance (FDR<0.05). 58 CpGs, mapping 38 well-known disease-related genes intergenic regions, are confirmed panel. A mortality risk score based on ten selected...

10.1038/ncomms14617 article EN cc-by Nature Communications 2017-03-17

Anthrax toxin causes anthrax pathogenesis and expression levels of ANTXR2 (anthrax receptor 2) are strongly correlated with susceptibility. Previous studies found that transcript abundance varies considerably in individuals different ethnic/geographical groups, but no eQTLs (expression quantitative trait loci) have been identified. By using 3C (chromatin conformation capture), CRISPR-mediated genomic deletion dual-luciferase reporter assay, gene loci containing cis-regulatory elements were...

10.3390/toxins8010001 article EN cc-by Toxins 2015-12-22

The aberrant activation of the Notch signaling has been associated with development colon cancers. However, role Notch1 in pathogenesis cancers is poorly understood.The expression cancer tissues and nontumor cell lines was examined by Western blot analysis immunohistochemistry. impact small interfering RNA (siRNA)-mediated knockdown or intracellular domain (NICD)-based transgene-induced overexpression on proliferation, cycling, apoptosis, colony formation, tumorsphere formation vitro growth...

10.1002/cncr.25449 article EN Cancer 2010-07-21

Newly established blood DNA methylation markers that are strongly associated with smoking might open new avenues for lung cancer (LC) screening. We aimed to assess the performance of top hits from previous epigenome-wide association studies in prediction LC incidence. In a prospective nested case-control study, at AHRR (cg05575921), 6p21.33 (cg06126421), and F2RL3 (cg03636183) were measured by pyrosequencing baseline whole samples 143 incident cases identified during 11 years follow-up 457...

10.1186/s13148-016-0292-4 article EN cc-by Clinical Epigenetics 2016-11-25

DNA methylation plays critical roles in transcriptional regulation and chromatin remodeling. Differentially methylated regions (DMRs) have important implications for development, aging diseases. Therefore, genome-wide mapping of DMRs across various temporal spatial methylomes is revealing the impact epigenetic modifications on heritable phenotypic variation. We present a quantitative approach, differentially (QDMRs), to quantify difference identify from profiles by adapting Shannon entropy....

10.1093/nar/gkr053 article EN cc-by-nc Nucleic Acids Research 2011-02-08

Anthocyanins are plant pigments with diverse biological functions that contribute to fruit quality and beneficial human health. Anthocyanin accumulation can be influenced by environmental signals, such as light, plants have developed sophisticated systems receive transduce these signals. However, the associated molecular mechanisms not well understood. In this study, we investigated potential function of mitogen-activated protein kinases, which members light signaling pathway, during...

10.1111/tpj.15267 article EN The Plant Journal 2021-04-09

Hybrid vigor is highly valued in the agricultural industry. Male sterility an important trait for crop breeding. Pollen development under strict control of both gametophytic and sporophytic factors, defects this process can result male sterility. Both dicot Arabidopsis moncot rice, proper timing programmed cell death (PCD) tapetum ensures pollen development. Dynamic ROS levels have been reported to tapetal PCD, thus development, rice. However, it was unclear whether evolutionarily conserved,...

10.1186/s12870-017-1025-3 article EN cc-by BMC Plant Biology 2017-04-20

<p id="p00010">There is a close relationship between peer victimization and internalizing problems in children adolescents. According to the interpersonal risk model, negative experiences, such as victimization, are important stressors, they leave with their basic need for belonging unsatisfied so lead series of problem behaviors. The symptom-driven model emphasizes that leaves individuals vulnerable attack, factors predicting victimization. interaction shows childhood adolescence...

10.3724/sp.j.1041.2022.00828 article EN Acta Psychologica Sinica 2022-05-16

Background Numerous researches have investigated the correlation between single nucleotide polymorphisms (SNPs) in transcription factor forkhead box protein 3 (Foxp3) gene and development of various cancers. However, relationship Foxp3 polymorphism bladder cancer (BC) remain unclear. Method This hospital-based case-control study enrolled a total 316 patients diagnosed with BC 643 healthy controls. Two SNPs (rs3761548 C/A, rs5902434 del/ATT) were selected, genotyping samples was performed...

10.3389/fonc.2025.1506900 article EN cc-by Frontiers in Oncology 2025-01-28

Epigenome‐wide association studies have established methylation patterns related to smoking, the major risk factor of lung cancer (LC), which are distinct from profiles disclosed in LC patients. This study simultaneously investigated associations smoking‐associated and LC‐related markers with mortality. DNA was determined by HM450K assay baseline blood samples 1,565 older adults a population‐based case–cohort study. The 151 CpGs (smoCpGs) 3,806 (caCpGs) mortality were assessed weighted Cox...

10.1002/ijc.30374 article EN International Journal of Cancer 2016-08-09

Abstract Background The difference between an individual's chronological and DNA methylation predicted age (DNAmAge), termed DNAmAge acceleration (DNAmAA), can capture life-long environmental exposures age-related physiological changes reflected in status. Several studies have linked DNAmAA to morbidity mortality, yet its relationship with kidney function has not been assessed. We evaluated the associations seven DNAm aging lifespan predictors (as well as GrimAge components) five traits...

10.1186/s13148-021-01082-w article EN cc-by Clinical Epigenetics 2021-06-02

// Tianzhen Wang 1, * , Yan He Yuanyuan Zhu 2, Mingwei Chen 3, Mingjiao Weng 1 Chao Yang Zhang 4 Ning 5 Ran Zhao Weiwei Yinji Jin Jing Li Riju James Rajkumar Ezakiel Redpath Lei Xiaoming Zhaohua Zhong 6 Fengmin Yunwei Wei 7 Guomin Shen 8 Dong 9 Ying Liu Guangyu 2 Xiaobo 10 Department of Pathology, Harbin Medical University, Harbin, China Gastrointestinal Oncology, the Affiliated Tumor Hospital 3 Anatomy, Nutrition and Food Hygiene, Public Health College, Surgery, International Pecking...

10.18632/oncotarget.12869 article EN Oncotarget 2016-10-25

Abstract Oxidative stress has been linked to cancer development in previous studies. However, the association between pre-diagnostic oxidatively generated DNA/RNA damage levels and incident rarely investigated. Urinary oxidized guanine/guanosine (OxGua) concentrations, including 8-hydroxy-2′-deoxyguanosine, were assessed 8,793 older adults a population-based German cohort. 1,540 cases, 207 lung, 196 colorectal, 218 breast 245 prostate cases diagnosed during over 14 years of follow-up....

10.1038/s41598-019-42596-x article EN cc-by Scientific Reports 2019-05-08

The high-frequent pulsing ablation of C/C−SiC−ZrB2−ZrC composites under millisecond-scaled single loading for different cycles was studied. sample ablated and cooled by plasma airflow alternately on a self-developed bench. Results indicated that the rates decreased quickly before 1000 then declined gradually until impact 2000 cycles. Microstructure, phase surface temperature analyses suggested an incomplete layer mixed ceramic product formed surfaces tested amount bare carbon tended to be...

10.1016/s1003-6326(22)66127-2 article EN Transactions of Nonferrous Metals Society of China 2023-02-01
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