A5002158775- Microbial Community Ecology and Physiology
- Genomics and Phylogenetic Studies
- Legume Nitrogen Fixing Symbiosis
- Methane Hydrates and Related Phenomena
- Gut microbiota and health
- Multiple Sclerosis Research Studies
- Epigenetics and DNA Methylation
- Geology and Paleoclimatology Research
- Plant nutrient uptake and metabolism
- Plant-Microbe Interactions and Immunity
- Metabolism and Genetic Disorders
- Plant Pathogenic Bacteria Studies
- Environmental DNA in Biodiversity Studies
- Viral Infectious Diseases and Gene Expression in Insects
- Insect Resistance and Genetics
- Indoor Air Quality and Microbial Exposure
- Immune responses and vaccinations
- Aquaculture disease management and microbiota
- Entomopathogenic Microorganisms in Pest Control
- Mycorrhizal Fungi and Plant Interactions
- Peatlands and Wetlands Ecology
- Soil Carbon and Nitrogen Dynamics
- Diatoms and Algae Research
- Mitochondrial Function and Pathology
- Atmospheric chemistry and aerosols
Siberian Branch of the Russian Academy of Sciences
2015-2024
Institute of Chemical Biology and Fundamental Medicine
2014-2024
Sechenov University
2020-2022
Russian Academy of Sciences
2012-2021
Institute of Experimental Cardiology
2017
Institute of Bioorganic Chemistry
2007
The aim of this study was to evaluate, via various molecular methods, the possible correlations between microbial community structure Prussian carp and environmental compartments their habitat.Microbial communities in intestine were studied using PCR-screening, cloning next-generation high-throughput sequencing 16S ribosomal RNA genes. rDNA metagenomic showed higher bacterial diversity comparison with clone libraries, while group-specific PCR positive detection nine bacteria phyla....
Multiple sclerosis (MS) is a severe neurodegenerative disease of polygenic etiology affecting the central nervous system. In addition to genetic factors, epigenetic mechanisms, primarily DNA methylation, which regulate gene expression, play an important role in MS development and progression. this study, we have performed first whole-genome methylation profiling peripheral blood mononuclear cells relapsing-remitting (RRMS) primary-progressive (PPMS) patients compared them those healthy...
This paper presents a deep analysis of the accessory genome an economically promising strain Ensifer (Sinorhizobium) meliloti, L6-AK89, obtained as result next-generation high-throughput sequencing (MiSeq, MinIon). Strain L6-AK89 is StrR mutant native CIAM1775, symbiont Medicago lupulina that adapted to saline and arid habitat in NW Kazakhstan. CIAM1775 effective inoculant M. cv. Mira (fodder type standard), cultivated on moderately acid soils agricultural region Russia. makes it possible...
Managing soil biodiversity by reduced or no tillage is an increasingly popular approach. Soil mycobiome in Siberian agroecosystems has been scarcely studied; little known about its changes due to tillage. We studied Chernozem under natural steppe vegetation and cropped for wheat conventional a long-term field trial West Siberia, Russia, using ITS2 rDNA gene marker (Illumina MiSeq sequencing). Half of the identified OTUs were Ascomycota with 82% total number sequence reads showing, like other...
Phytopathogenic bacteria belonging to the Pectobacterium and Dickeya genera (soft-rot Pectobacteriaceae) are in focus of agriculture-related microbiology because their diversity, substantial negative impact on production potatoes vegetables, prospects bacteriophage applications for disease control. Because numerous amendments taxonomy P. carotovorum, there still a few studied sequenced strains among this species. The present work reports isolation characterization phage infectious type...
The present comprehensive study aimed to estimate the aftermath of oil contamination and efficacy removing upper level polluted soil under conditions extreme northern taiga northeastern European Russia. Soil samples from three sites were studied. Two contaminated with contents a nearby sludge collector five years prior sampling. highly was removed one them. other left for self-restoration. A chemical analysis soils conducted, changes in composition zoocoenosis bacterial fungal microbiota...
As the information about effect of pectin prebiotics on chicken gut microbiota is scarce, by using high throughput metagenomic sequencing with Illumina Miseq we examined cloaca bacteriobiome male and female chickens receiving antibiotic- or pectin-containing drinking water. The was dominated two phyla (Firmicutes Proteobacteria) three classes (Clostridia, Bacilli Gammaproteobacteria), difference displayed relative abundance 42 OTUs. At level major dominant OTUs, prebiotic supplementation...
Agricultural practices can affect root-associated microbiota, but the effect of fertilization is still poorly examined. The aim this study was to obtain 16S and ITS metagenomic profiles tomato rhizosphere root endosphere under mineral (NPK) in open field experiment south West Siberia. We found 6 bacterial 3 fungal phyla roots 24 16 rhizosphere. Proteobacteria Actinobacteria together contributed 90% total number sequence reads 50% rhizosphere, whereas Ascomycota ultimately prevailed OTUs’...
Managing soil biodiversity using reduced tillage is a popular approach, yet bacteriobiomes in the agroecosystems of Siberia has been scarcely studied, especially as they are related to tillage. We studied Chernozem under natural steppe vegetation and cropped for wheat conventional or no long-term field trial Novosibirsk region, Russia, by sequence diversity V3/V4 region 16S rRNA genes. Actinobacteria, Acidobacteria, Proteobacteria summarily accounted 80% total number sequences, with...
A novel strain of Lymantria dispar multiple nucleopolyhedrovirus (LdMNPV-27) was isolated from dead larvae a Western Siberian (WS) population gypsy moths (Lymantria L.). We report the complete genome sequence this strain, comprising 164,108 bp and double-stranded circular DNA encoding 162 predicted open reading frames.
The inoculation of legume seeds with Sinorhizobium bacteria significantly improves pasture production. Here, we report the draft genome sequence symbiotically efficient and salt-tolerant meliloti inoculant strain AK555, which substantially increases biomass yield a number Medicago sativa subsp. varia varieties, such as "Agniya," "Vega 87," "Selena."
The genome of a symbiotically effective salt-tolerant strain, Sinorhizobium meliloti S35m, isolated from alfalfa rhizosphere in soil native to the Caucasian region, was sequenced. Genomic islands, prophages, and elements potential CRISPR/Cas I type (Cas3_0_I) system were identified genome.
Microeukaryotes are vital for maintaining soil quality and ecosystem functioning, however, their communities less studied than bacterial fungal ones, especially by high throughput sequencing techniques. Alveolates important members of microbial communities, being consumers and/or prey other microorganisms. We alveolate diversity in under the undisturbed steppe (US) cropped wheat using two tillage practices (conventional, CT, no-till, NT) amplifying ITS2 marker with ITS3_KYO2/ITS4 primers...