Alejandro Ramirez

ORCID: 0000-0002-8803-8630
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About
Contact & Profiles
Research Areas
  • Neuroscience and Neuropharmacology Research
  • Neural dynamics and brain function
  • Neuroscience and Neural Engineering
  • RNA and protein synthesis mechanisms
  • RNA Research and Splicing
  • Endoplasmic Reticulum Stress and Disease
  • Advanced Fluorescence Microscopy Techniques
  • Monoclonal and Polyclonal Antibodies Research
  • Advanced Biosensing Techniques and Applications
  • Chronic Lymphocytic Leukemia Research
  • Cell Image Analysis Techniques
  • Lymphoma Diagnosis and Treatment
  • TGF-β signaling in diseases
  • Macrophage Migration Inhibitory Factor
  • Cancer, Hypoxia, and Metabolism
  • Treatment of Major Depression
  • Genetic factors in colorectal cancer
  • Acute Lymphoblastic Leukemia research
  • Optical Imaging and Spectroscopy Techniques
  • Advanced Memory and Neural Computing
  • Diet and metabolism studies
  • Genomics, phytochemicals, and oxidative stress
  • Chronic Myeloid Leukemia Treatments
  • Photoreceptor and optogenetics research
  • Connective tissue disorders research

University of South Florida
2021-2024

University of California, San Francisco
2019-2021

Universidad Autónoma del Estado de México
2019

Columbia University
2007-2017

New York Psychoanalytic Society and Institute
2016-2017

New York State Psychiatric Institute
2017

University of Colorado Boulder
2008

Soma location, dendrite morphology, and synaptic innervation may represent key determinants of functional responses individual neurons, such as sensory-evoked spiking. Here, we reconstruct the 3D circuits formed by thalamocortical afferents from lemniscal pathway excitatory neurons an anatomically defined cortical column in rat vibrissal cortex. We objectively classify 9 cell types estimate number distribution their somata, dendrites, synapses. Somata dendrites most intermingle, while...

10.1093/cercor/bhr317 article EN cc-by-nc Cerebral Cortex 2011-11-16

Receptor tyrosine kinase (RTK)-mediated activation of downstream effector pathways such as the RAS GTPase/MAP (MAPK) signaling cascade is thought to occur exclusively from lipid membrane compartments in mammalian cells. Here, we uncover a membraneless, protein granule-based subcellular structure that can organize RTK/RAS/MAPK cancer. Chimeric (fusion) oncoproteins involving certain RTKs including ALK and RET undergo de novo higher-order assembly into membraneless cytoplasmic granules...

10.1016/j.cell.2021.03.031 article EN cc-by Cell 2021-04-13

The broad range of biological responses elicited by transforming growth factor-β (TGF-β) in various types tissues and cells is mainly determined the expression level activity effector proteins Smad2 Smad3. It not fully understood how baseline properties Smad3 are regulated, although this molecule complex with many other at steady state. Here we show that nonactivated Smad3, but Smad2, undergoes proteasome-dependent degradation due to concerted action scaffolding protein Axin its associated...

10.1101/gad.1590908 article EN Genes & Development 2008-01-01

Expansion microscopy (ExM) increases the effective resolving power of any microscope by expanding sample with swellable hydrogel. Since its invention, ExM has been successfully applied to a wide range cell, tissue, and animal samples. Still, fluorescence signal loss during polymerization digestion limits molecular-scale imaging using ExM. Here, we report development label-retention (LR-ExM) set trifunctional anchors that not only prevent but also enable high-efficiency labeling SNAP CLIP...

10.1083/jcb.202105067 article EN cc-by-nc-sa The Journal of Cell Biology 2021-07-06

Current approaches for surveying whole brains neurons activated during a particular state typically rely on immediate early gene (IEG) expression. However, IEG expression is variable across subjects and brain areas, demanding large sample sizes. Further, it cannot determine if the same or different respond to two events. To overcome these issues, we present whole-brain screening method utilizing transgenic mice label at timepoints. An imaging analysis pipeline surveys activity in ~500 areas...

10.1101/2025.03.07.641687 preprint EN bioRxiv (Cold Spring Harbor Laboratory) 2025-03-10

Abstract Expansion microscopy (ExM) increases the effective resolving power of any microscope by expanding sample with swellable hydrogel. Since its invention, ExM has been successfully applied to a wide range cell, tissue and animal samples. Still, fluorescence signal loss during polymerization digestion limits molecular-scale imaging using ExM. Here we report development label-retention (LR-ExM) set trifunctional anchors that not only prevent but also enable high-efficiency labeling SNAP...

10.1101/687954 preprint EN cc-by-nc bioRxiv (Cold Spring Harbor Laboratory) 2019-07-01

Abstract Previous studies indicate that the triterpene glycoside actein from herb black cohosh inhibits growth of human breast cancer cells. This study seeks to identify genes altered in cells by treatment with actein, using gene expression analysis. We treated MDA‐MB‐453 at 2 doses, 20 or 40 μg/mL, for 6 24 hr. identified 5 were activated after each treatments are known play a role cellular responses diverse stresses, including DNA damage and unfolded protein responses. In addition, four...

10.1002/ijc.22897 article EN International Journal of Cancer 2007-07-09

Osteogenesis Imperfecta (OI) is a hereditary connective tissue disorder characterized by bone fragility. IFITM5 gene mutation has been found in all patients with OI type V (< 5% of cases), but its etiologic mechanism remains unclear. OI-V clinical phenotype includes fracture susceptibility variable severity, metaphyseal changes at birth, radial head dislocation, mineralized interosseous membranes, and hyperplasic callus. Short stature, blue sclerae, fractures scoliosis may be rarely observed.

10.1016/j.eprac.2024.03.322 article EN other-oa Endocrine Practice 2024-05-01

Summary Receptor tyrosine kinase (RTK)-mediated activation of downstream effector pathways such as the RAS GTPase/MAP (MAPK) signaling cascade is thought to occur exclusively from lipid membrane compartments in mammalian cells. Here, we uncover a membraneless, protein granule-based subcellular structure that can organize RTK/RAS/MAPK cancer. Chimeric (fusion) oncoproteins involving certain RTKs including ALK and RET undergo de novo higher-order assembly into membraneless cytoplasmic...

10.1101/704312 preprint EN cc-by-nc bioRxiv (Cold Spring Harbor Laboratory) 2019-07-16
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