Anne Eagle
A5090344043- Biomedical Text Mining and Ontologies
- Genetics, Bioinformatics, and Biomedical Research
- Bioinformatics and Genomic Networks
- Genomics and Phylogenetic Studies
- Single-cell and spatial transcriptomics
- Genomics and Rare Diseases
- Genomics and Chromatin Dynamics
- Epigenetics and DNA Methylation
- Gene expression and cancer classification
- Machine Learning in Bioinformatics
- Mitochondrial Function and Pathology
- Cancer-related molecular mechanisms research
- Research Data Management Practices
- Zebrafish Biomedical Research Applications
University of Oregon
2012-2022
ZFIN, the Zebrafish Model Organism Database (http://zfin.org), is central resource for zebrafish genetic, genomic, phenotypic and developmental data. ZFIN curators manually curate integrate comprehensive data involving genes, mutants, transgenics, phenotypes, genotypes, gene expressions, morpholinos, antibodies, anatomical structures publications. Integrated views of these data, as well gathered through collaborations exchanges, are provided a wide selection web-based search forms. Among...
Abstract The Alliance of Genome Resources (Alliance) is a consortium the major model organism databases and Gene Ontology that guided by vision facilitating exploration related genes in human well-studied organisms providing highly integrated comprehensive platform enables researchers to leverage extensive body genetic genomic studies these organisms. Initiated 2016, building central portal (www.alliancegenome.org) for access data primary along with gene ontology data. All types represented...
The Zebrafish Information Network (zfin.org) is the central repository for Danio rerio genetic and genomic data. has served zebrafish research community since 1994, expertly curating, integrating, displaying Key data types available at include, but are not limited to, genes, alleles, human disease models, gene expression, phenotype, function. makes Findable, Accessible, Interoperable, Reusable through nomenclature, curatorial annotation activities, web interfaces, downloads. Recently, 6...
The Alliance of Genome Resources (the Alliance) is a combined effort 7 knowledgebase projects: Saccharomyces Database, WormBase, FlyBase, Mouse the Zebrafish Information Network, Rat and Gene Ontology Resource. seeks to provide several benefits: better service various communities served by these projects; harmonized view data for all biomedical researchers, bioinformaticians, clinicians, students; more sustainable infrastructure. has cross-organism useful comparative views gene function,...
The Zebrafish Model Organism Database (ZFIN; https://zfin.org) is the central resource for genetic, genomic, and phenotypic data zebrafish (Danio rerio) research. ZFIN continuously assesses trends in research, adding new types providing repositories tools that members of research community can use to navigate data. many advantages flexibility manipulation have made them an increasingly attractive animal model study human disease.To facilitate disease-related developed support provide disease...
The Zebrafish Information Network (ZFIN) (https://zfin.org/) is the database for model organism, zebrafish (Danio rerio). ZFIN expertly curates, organizes and provides a wide array of genetic genomic data, including genes, alleles, transgenic lines, gene expression, function, mutant phenotypes, orthology, human disease models, nomenclature reagents. New features at include increased support regions non-coding more expressive Gene Ontology annotations. has recently taken over maintenance...
Zebrafish, a popular organism for studying embryonic development and modeling human diseases, has so far lacked systematic functional annotation program akin to those in other animal models. To address this, we formed the international DANIO-CODE consortium created central repository store process zebrafish developmental genomic data. Our data coordination center ( https://danio-code.zfin.org ) combines total of 1,802 sets unpublished re-analyzed published data, which used improve existing...
The Zebrafish Model Organism Database (ZFIN; http://zfin.org) is the central resource for genetic and genomic data from zebrafish (Danio rerio) research. ZFIN staff curate detailed information about genes, mutants, genotypes, reporter lines, sequences, constructs, antibodies, knockdown reagents, expression patterns, phenotypes, gene product function, orthology publications. Researchers can submit mutant, transgenic, expression, phenotype directly to use Community Wiki share antibody protocol...
The Zebrafish Model Organism Database (ZFIN; http://zfin.org) is the central resource for zebrafish (Danio rerio) genetic, genomic, phenotypic and developmental data. ZFIN curators provide expert manual curation integration of comprehensive data involving genes, mutants, transgenic constructs lines, phenotypes, genotypes, gene expressions, morpholinos, TALENs, CRISPRs, antibodies, anatomical structures, models human disease publications. We integrate curated, directly submitted,...
The Zebrafish Information Network (ZFIN) (https://zfin.org/) is the database for model organism, zebrafish (Danio rerio). ZFIN expertly curates, organizes, and provides a wide array of genetic genomic data, including genes, alleles, transgenic lines, gene expression, function, mutant phenotypes, orthology, human disease models, nomenclature, reagents. New features at include major updates to home page page, two most used pages ZFIN. Data mutants function continue be contributed Alliance...
Abstract Zebrafish, a popular model for embryonic development and modelling human diseases, has so far lacked systematic functional annotation programme akin to those in other animal models. To address this, we formed the international DANIO-CODE consortium created first central repository store process zebrafish developmental genomic data. Our Data Coordination Center ( https://danio-code.zfin.org ) combines total of 1,802 sets unpublished reanalysed published genomics data, which used...
Abstract The Zebrafish Information Network (ZFIN, zfin.org ) is the central repository for zebrafish genetic and genomic data. ZFIN expertly curates, integrates, displays data including genes, alleles, human disease models, gene expression, phenotype, function, orthology, morpholino, CRISPR, TALEN, antibodies. makes research Findable, Accessible, Interoperable, Reusable (FAIR) through nomenclature, curatorial annotation activities, web interfaces, downloads. a founding member of Alliance...