Johar Ali

ORCID: 0000-0003-1062-3204
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About
Contact & Profiles
Research Areas
  • Yeasts and Rust Fungi Studies
  • Wheat and Barley Genetics and Pathology
  • COVID-19 Clinical Research Studies
  • SARS-CoV-2 and COVID-19 Research
  • Inflammatory Bowel Disease
  • Gut microbiota and health
  • COVID-19 epidemiological studies
  • Chromosomal and Genetic Variations
  • Genomics and Chromatin Dynamics
  • Clostridium difficile and Clostridium perfringens research
  • Cancer Genomics and Diagnostics
  • COVID-19 Pandemic Impacts
  • Genomics and Phylogenetic Studies
  • COVID-19 and Mental Health
  • Computational Drug Discovery Methods
  • Diagnosis and treatment of tuberculosis
  • Antibiotic Resistance in Bacteria
  • Probiotics and Fermented Foods
  • SARS-CoV-2 detection and testing
  • CRISPR and Genetic Engineering
  • Liver Disease and Transplantation
  • Nuclear Receptors and Signaling
  • Genomic variations and chromosomal abnormalities
  • Ureteral procedures and complications
  • COVID-19 and healthcare impacts

University of Peshawar
2022-2024

Khushal Khan Khattak University Karak
2021-2023

Karakoram International University
2021-2023

Khyber Medical College
2020-2022

Government of Khyber Pakhtunkhwa
2022

University of Azad Jammu and Kashmir
2022

University of Malakand
2022

Usman Institute of Technology
2022

Hôpital Sahloul
2017-2021

Center for Genomic Science
2018-2021

LaDeana W. Hillier Robert S. Fulton Lucinda A. Fulton Tina Graves Kymberlie Pepin and 95 more Caryn Wagner-McPherson Dan Layman Jason E. Maas Sara R. Jaeger Rebecca Walker Kristine M. Wylie Mandeep Sekhon Michael C. Becker Michelle D. O’Laughlin Mark E. Schaller Ginger Fewell Kimberly D. Delehaunty Tracie L. Miner William E. Nash M. Cordes Hui Du Hui Sun Jennifer Edwards Holland Bradshaw-Cordum Johar Ali S. Andrews Amber Isak Andrew VanBrunt Christine Nguyen Feiyu Du Betty Lamar Laura Courtney Joelle Kalicki Philip Ozersky Lauren Bielicki Kelsi Scott Andrea E. Holmes Richard Harkins Anthony Harris Cynthia Madsen Strong Shunfang Hou Chad Tomlinson Sara Dauphin-Kohlberg Amy Kozlowicz-Reilly Shawn Leonard Theresa Rohlfing Susan M. Rock Aye-Mon Tin-Wollam A. Abbott Patrick Minx Rachel Maupin Catrina Strowmatt Phil Latreille Nancy Miller D R Johnson J. Murray Jeffrey P. Woessner Michael C. Wendl Shiaw‐Pyng Yang Brian Schultz John W. Wallis John Spieth Tamberlyn Bieri Joanne O. Nelson Nicolas Berkowicz P. Wohldmann Lisa L. Cook Matthew T. Hickenbotham James M. Eldred Donald Williams Joseph A. Bedell Elaine R. Mardis Sandra W. Clifton Stephanie L. Chissoe Marco A. Marra Christopher K. Raymond Eric Haugen Will Gillett Yang Zhou R. Lupski James Karen A. Phelps Shawn Iadanoto Kerry L. Bubb Elizabeth Simms Ruth Levy James B. Clendenning Rajinder Kaul W. James Kent Terrence S. Furey Robert Baertsch Michael R. Brent Evan Keibler Paul Flicek Peer Bork Mikita Suyama Jeffrey A. Bailey Matthew E. Portnoy David Torrents Asif Chinwalla Warren Gish

10.1038/nature01782 article EN Nature 2003-07-01

The ongoing COVID-19 pandemic is caused by SARs-CoV-2. virus transmitted from person to through droplet infections i.e. when infected in close contact with another person. In January 2020, first report of detection SARS-CoV-2 faeces, has made it clear that human wastewater might contain this virus. This may illustrate the probability environmentally facilitated transmission, mainly sewage, however, environmental conditions could facilitate faecal oral transmission not yet clear. We used...

10.1371/journal.pone.0249568 article EN cc-by PLoS ONE 2021-06-29

Abstract Background The ongoing COVID-19 pandemic caused by SARs-CoV-2 was transmitted person to via droplet infections and fecal-oral transmission. This illustrates the probability of environmentally facilitated transmission, mainly sewage. Method We used existing Pakistan polio environment surveillance network investigate presence using three commercially available kits E-Gene detection published assay for surety confirmatory positivity. A Two-phase separation method is sample...

10.1101/2020.06.03.20121426 preprint EN medRxiv (Cold Spring Harbor Laboratory) 2020-06-05
LaDeana W. Hillier Tina Graves Robert S. Fulton Lucinda A. Fulton Kymberlie Pepin and 95 more Patrick Minx Caryn Wagner-McPherson Dan Layman Kristine M. Wylie Mandeep Sekhon Michael C. Becker Ginger Fewell Kimberly D. Delehaunty Tracie L. Miner William E. Nash Colin Kremitzki Lachlan Oddy Hui Du Hui Sun Holland Bradshaw-Cordum Johar Ali Jason Carter M. Cordes Anthony Harris Amber Isak Andrew Van Brunt Christine Nguyen Feiyu Du Laura Courtney Joelle Kalicki Philip Ozersky Scott Abbott Jon R. Armstrong Edward A. Belter Lauren Caruso Maria Louise Cedroni Marc Cotton Teresa Davidson Anu Desai Glendoria Elliott Thomas O. Erb Catrina C. Fronick Tony Gaige William Haakenson Krista Haglund Andrea E. Holmes Richard Harkins Kyung Kim Scott Kruchowski Cynthia Madsen Strong Neenu Grewal Ernest Goyea Shunfang Hou Andrew P. Levy Scott Martinka Kelly Mead Michael D. McLellan Rick Meyer Jennifer Randall-Maher Chad Tomlinson Sara Dauphin-Kohlberg Amy Kozlowicz-Reilly Neha Shah Sharhonda Swearengen-Shahid Jacqueline Snider Joseph T. Strong J.E. Thompson Martin Yoakum Shawn Leonard Charlene Pearman Lee Trani Maxim Radionenko Jason Waligorski Chunyan Wang Susan M. Rock Aye-Mon Tin-Wollam Rachel Maupin Phil Latreille Michael C. Wendl Shiaw-Pyng Yang Craig Pohl John W. Wallis John Spieth Tamberlyn Bieri Nicolas Berkowicz Joanne O. Nelson John R. Osborne Li Ding Rekha Meyer Aniko Sabo Yoram Shotland Prashant R. Sinha P. Wohldmann Lisa L. Cook Matthew T. Hickenbotham James M. Eldred Donald Williams Thomas A. Jones Xinwei She Francesca D. Ciccarelli

10.1038/nature03466 article EN Nature 2005-04-01

The Pleiades Promoter Project integrates genomewide bioinformatics with large-scale knockin mouse production and histological examination of expression patterns to develop MiniPromoters related tools designed study treat the brain by directed gene expression. Genes interest are subjected bioinformatic analysis delineate candidate regulatory regions, which then incorporated into a panel compact human drive regions cell types interest. Using single-copy, homologous-recombination “knockins” in...

10.1073/pnas.1009158107 article EN Proceedings of the National Academy of Sciences 2010-08-31

Aim: Severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2), a pernicious viral disease, causes distress responsible for mortality and morbidity worldwide. To screen different immunomodulatory medicinal compounds to unravel their interaction with SARS-CoV-2 proteins. Materials & methods: A library of antiviral capability were analyzed against SARS proteases, spike protein nonstructural proteins (NSP-9, 15) using Autodock vina. Results: Out more than 300 compounds, only six compounds:...

10.2217/fvl-2020-0079 article EN Future Virology 2020-05-01

In this paper, the depositional environment, age, and tectonic context of Sub-Himalayan Kuldana Formation are discussed in detail. To determine Formation’s setting, sedimentological, palaeontological, petrographic investigations have been conducted accordingly. The lithologically consists both siliciclastic carbonate rocks. Petrographically, sandstone is divided into litharenite feldspathic petrofacies. plots on QtFL QmFLt suggest that derived from a recycled orogen provenance field...

10.3390/min12070794 article EN Minerals 2022-06-22

Bamboo, a fast-growing woody perennial grass from the Poaceae family, is widely recognized for its ecological and economic significance. Commonly referred to as "Green Gold" "Cradle Coffin Timber," it used in construction, food production, charcoal manufacturing, cottage industries. Additionally, bamboo plays crucial role soil conservation by enhancing biological, chemical, physical properties. Globally, covers approximately 22 million hectares, yet research on propagation techniques remains...

10.55627/agribiol.003.01.1260 article EN Journal of agriculture and biology. 2025-03-28

As part of a larger project to sequence the Populus genome and generate genomic resources for this emerging model tree, we constructed physical map genome, representing one few such maps an undomesticated, highly heterozygous plant species. The map, consisting 2802 contigs, was from fingerprinted bacterial artificial chromosome (BAC) clones. represents approximately 9.4-fold coverage which has been estimated assembly be 485 +/- 10 Mb in size. BAC ends were sequenced assist long-range...

10.1111/j.1365-313x.2007.03112.x article EN The Plant Journal 2007-05-09

Abstract Background Rust fungi are biotrophic basidiomycete plant pathogens that cause major diseases on plants and trees world-wide, affecting agriculture forestry. Their nature precludes many established molecular genetic manipulations lines of research. The generation genomic resources for these microbes is leading to novel insights into biology such as interactions with the hosts guiding directions breakthrough research in pathology. Results To support gene discovery model verification...

10.1186/1471-2164-12-161 article EN cc-by BMC Genomics 2011-03-24

Background: Coronavirus disease 2019 (COVID-19) is a global health threat and caused universal psychosocial impact on the general population. Therefore, knowledge, attitude, perceptions (KAPs) of population are critical for development effective implementation standard operating procedures (SOP) to contain contagion minimize losses. current study was conducted understand evaluate KAPs Pakistani populations toward COVID-19. Methods: An online cross-sectional carried out among participants...

10.3389/fmed.2021.747819 article EN cc-by Frontiers in Medicine 2021-12-24

The COVID-19 has affected worldwide population at every level from advance to under developed countries and also majorly clinical microbiology labs. This critique covers current issues furthermore, challenges for the research facility determination of diseases brought about by extreme intense respiratory disorder coronavirus 2 (SARS-CoV-2). In pre analytical stage, gathering best possible information time privilege become fundamental a brief exact basic finding COVID-19. Appropriate measures...

10.54112/bcsrj.v2020i1.31 article EN cc-by-nc Biological and Clinical Sciences Research Journal 2020-12-12

The study was designed to investigate the fecal microbiome and resistome of broiler chickens infected with multidrug-resistant (MDR) Escherichia coli (E. coli). Fecal samples (n = 410) from were collected thirteen randomly selected sites Khyber Pakhtunkhwa screened for presence MDR E. coli. Upon initial screening, (13) isolates then subjected shotgun metagenome next-generation sequencing (NGS). NGS based analysis identified multidrug efflux pump system-related genes at highest prevalence...

10.3390/ani10122350 article EN cc-by Animals 2020-12-09

Copy number variations (CNVs) are a major source of genomic variability and especially significant in cancer. Until recently microarray technologies have been used to characterize CNVs genomes. However, advances next-generation sequencing technology offer opportunities deduce copy directly from genome data. Unfortunately cancer genomes differ normal several aspects that make them far less amenable detection. For example, often aneuploid an admixture diploid/non-tumor cell fractions. Also...

10.1093/bioinformatics/btt611 article EN cc-by-nc Bioinformatics 2013-11-04

COVID-19 disease caused by the SARS-CoV-2 virus has shaken our health and wealth foundations. Although vaccines will become available allowing for attenuation of progression rates, distribution can create other challenges delays. Hence repurposed drugs against be an attractive parallel strategy that integrated into routine clinical practice even in poorly-resourced countries. The present study was designed using knowledge viral pathogenesis pharmacodynamics broad-spectrum antiviral agents...

10.1080/07391102.2021.1977698 article EN Journal of Biomolecular Structure and Dynamics 2021-09-14

The fundamental presupposition of this paper is that ‘gender’ a social category, hence construction, which can be negotiated and left fluid instead something fixed eternal. To examine the gendered order, study focuses on how hegemonic masculinity feminine subordination are naturalized by positioning men as physically strong women weak ground biological differences between sexes. informed constructionist understandings gender. main focus to highlight discourses in Pakistan inform textbooks...

10.4471/generos.2012.11 article EN cc-by Multidisciplinary Journal of Gender Studies 2012-10-25

More than 200 countries across the globe, including Pakistan, have closed educational institutions (schools, colleges, universities and madrassas) to contain spread of coronavirus (COVID-19 pandemic). These closures disrupted learning more 1.7 billion learners (representing 91 per cent total enrolled students) world. It attempts critically examine how schools' in Pakistan perpetuate reproduce inequalities education. We attempted explore explain education during COVID-19 pandemic lockdown...

10.1080/03004279.2021.1931917 article EN Education 3-13 2021-05-20
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