Michael J. Becich

ORCID: 0000-0003-4687-8751
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Research Areas
  • Bladder and Urothelial Cancer Treatments
  • Gene expression and cancer classification
  • Urinary Bladder and Prostate Research
  • Estrogen and related hormone effects
  • Occupational and environmental lung diseases
  • Molecular Biology Techniques and Applications
  • Bioinformatics and Genomic Networks
  • Interstitial Lung Diseases and Idiopathic Pulmonary Fibrosis
  • Epigenetics and DNA Methylation
  • Cancer Genomics and Diagnostics
  • Urinary and Genital Oncology Studies
  • Urological Disorders and Treatments
  • Pancreatic and Hepatic Oncology Research
  • Prostate Cancer Diagnosis and Treatment
  • Cancer-related Molecular Pathways
  • Medical Imaging and Pathology Studies
  • Biomedical Text Mining and Ontologies
  • Erythrocyte Function and Pathophysiology
  • Nuclear Structure and Function
  • Vitamin D Research Studies
  • Glycosylation and Glycoproteins Research
  • Prostate Cancer Treatment and Research
  • Sarcoma Diagnosis and Treatment
  • Sarcoidosis and Beryllium Toxicity Research
  • Fibroblast Growth Factor Research

University of Pittsburgh
2011-2024

UPMC Hillman Cancer Center
1995-2019

University of Pittsburgh Medical Center
1994-2019

University of Pennsylvania
2016

Roswell Park Comprehensive Cancer Center
2007

Shadyside Hospital
2000

Institute for Medical Informatics and Biostatistics
2000

University of Iowa
1994-1998

University of Bristol
1996

Washington University in St. Louis
1989-1995

Julija Hmeljak Francisco Sánchez-Vega Katherine A. Hoadley Juliann Shih Chip Stewart and 95 more David I. Heiman Patrick Tarpey Ludmila Danilova Esther Drill Ewan A. Gibb Reanne Bowlby Rupa S. Kanchi Hatice U. Osmanbeyoglu Yoshitaka Sekido Jumpei Takeshita Yulia Newton Kiley Graim Manaswi Gupta Carl M. Gay Lixia Diao David L. Gibbs Vésteinn Thórsson Lisa Iype Havish S. Kantheti David T. Severson Gloria Ravegnini Patrice Desmeules Achim A. Jungbluth William D. Travis Sanja Đačić Lucian R. Chirieac Françoise Galateau-Sallé Junya Fujimoto Aliya N. Husain Henrique C.S. Silveira Valerie W. Rusch Robert C. Rintoul Harvey I. Pass Hedy L. Kindler Marjorie G. Zauderer David J. Kwiatkowski Raphael Bueno Anne S. Tsao Jenette Creaney Tara M. Lichtenberg Kristen Leraas Jay Bowen Ina Felau Jean C. Zenklusen Rehan Akbani Andrew D. Cherniack Kai Ye Michael S. Noble Jonathan A. Fletcher A. Gordon Robertson Ronglai Shen Hiroyuki Aburatani B. W. Robinson Peter J. Campbell Marc Ladanyi Hiroyuki Aburatani Rehan Akbani Adrian Ally Pavana Anur Joshua Armenia J. Todd Auman Miruna Balasundaram Saianand Balu Stephen B. Baylin Michael J. Becich Carmen Behrens Rameen Beroukhim Craig M. Bielski Tom Bodenheimer Arnoud Boot Jay Bowen Reanne Bowlby Denise Brooks Raphael Bueno Kai Ye Flavio Mavignier Cárcano Rebecca Carlsen André Lopes Carvalho Andrew D. Cherniack Dorothy Cheung Lucian R. Chirieac Juok Cho Eric Chuah Sudha Chudamani Carrie Cibulskis Leslie Cope Daniel Crain Jenette Creaney Erin Curley Sanja Đačić Ludmila Danilova Assunta De Rienzo Timothy Defreitas John A. Demchok Noreen Dhalla

Abstract Malignant pleural mesothelioma (MPM) is a highly lethal cancer of the lining chest cavity. To expand our understanding MPM, we conducted comprehensive integrated genomic study, including most detailed analysis BAP1 alterations to date. We identified histology-independent molecular prognostic subsets, and defined novel subtype with TP53 SETDB1 mutations extensive loss heterozygosity. also report strong expression immune-checkpoint gene VISTA in epithelioid strikingly higher than...

10.1158/2159-8290.cd-18-0804 article EN Cancer Discovery 2018-10-15

No AccessJournal of Urology1 May 1992The Relative Proportion Stromal and Epithelial Hyperplasia is Related to the Development Symptomatic Benign Prostate Ellen Shapiro, Michael J. Becich, Victor Hartanto, Herbert Lepor ShapiroEllen Shapiro , BecichMichael Becich HartantoVictor Hartanto LeporHerbert View All Author Informationhttps://doi.org/10.1016/S0022-5347(17)37546-8AboutPDF ToolsAdd favoritesDownload CitationsTrack CitationsPermissionsReprints ShareFacebookLinked InTwitterEmail The...

10.1016/s0022-5347(17)37546-8 article EN The Journal of Urology 1992-05-01

Cardiac fibroblasts impact myocardial development and remodeling through intercellular contact with cardiomyocytes, but less is known about noncontact, profibrotic signals whereby alter cardiomyocyte behavior. Fibroblasts cardiomyocytes were harvested from newborn rat ventricles separated by serial digestion gradient centrifugation. Cardiomyocytes cultured in 1) standard medium, 2) medium diluted 1:1 PBS, or 3) conditioned > =72 h cardiac fibroblasts. Serum concentrations held constant under...

10.1152/ajpcell.00166.2006 article EN AJP Cell Physiology 2007-01-18

Myelodysplasia represents the most common cause of neurogenic bladder dysfunction in children. The specific histological features associated with myelodysplastic bladders have not been previously characterized. Our objective was to study relationship between smooth muscle and connective tissue control using classical morphometric analysis assistance an automated image system. Gross specimens normal stillborn fetuses showed organized bundles embedded a small amount tissue. myelomeningocele...

10.1016/s0022-5347(17)38521-x article EN The Journal of Urology 1991-05-01

Section:ChooseTop of pageAbstract <<Overview SarcoidosisOverview the Lung Micr...Rationale for GRADS S...Clinical Outcome MeasuresStudy Procedures and Samp...Study AnalysesStudy PotentialConclusionsReferencesCITING ARTICLES

10.1513/annalsats.201503-172ot article EN Annals of the American Thoracic Society 2015-07-20

Background Sarcoidosis is a multisystem granulomatous disease of unknown origin with variable and often unpredictable course pattern organ involvement. In this study we sought to identify specific bronchoalveolar lavage (BAL) cell gene expression patterns indicative distinct phenotypic traits. Methods RNA sequencing by Ion Torrent Proton was performed on BAL cells obtained from 215 well-characterised patients pulmonary sarcoidosis enrolled in the multicentre Genomic Research Alpha-1...

10.1183/13993003.02950-2020 article EN European Respiratory Journal 2021-06-03

Abstract The multifaceted nature of multiple sclerosis requires quantitative biomarkers that can provide insights related to diverse physiological pathways. To this end, proteomic analysis deeply-phenotyped serum samples, biological pathway modeling, and network were performed elucidate inflammatory neurodegenerative processes, identifying sensitive disease activity. Here, we evaluated the concentrations &gt; 1400 proteins in 630 samples from three cohorts for association with clinical...

10.1038/s41467-024-48602-9 article EN cc-by Nature Communications 2024-05-20

A prototype, content-based image retrieval system has been built employing a client/server architecture to access supercomputing power from the physician's desktop. The retrieves images and their associated annotations networked microscopic pathology database based on content similarity user supplied query images. Similarity is evaluated four feature types: color histogram, texture, Fourier coefficients, wavelet using vector dot product as distance metric. Current accuracy varies across...

10.1109/titb.2003.822952 article EN IEEE Transactions on Information Technology in Biomedicine 2003-12-01

No AccessJournal of Urology1 Jun 1991Internalization Bacille Calmette-Guerin by Bladder Tumor Cells Michael J. Becich, Shirley Carroll, and Timothy L. Ratliff BecichMichael Becich , CarrollShirley Carroll RatliffTimothy View All Author Informationhttps://doi.org/10.1016/S0022-5347(17)38622-6AboutPDF ToolsAdd to favoritesDownload CitationsTrack CitationsPermissionsReprints ShareFacebookLinked InTwitterEmail Mechanisms which intravesical bacille (BCG) treatment mediates antitumor activity are...

10.1016/s0022-5347(17)38622-6 article EN The Journal of Urology 1991-06-01

We evaluated the prognostic value of purified protein derivative skin test reactivity and a granulomatous response in intravesical bacillus Calmette-Guerin therapy. treated 62 patients with once week for 6 weeks. Purified tests were performed before after Cold cup bladder biopsies examined blind retrospective manner presence granulomas weeks completion A significant correlation between status free tumor either or positive was observed total patient population. Of 25 whose converted from...

10.1016/s0022-5347(17)45605-9 article EN The Journal of Urology 1986-02-01

BACKGROUND The cyclin-dependent kinase inhibitor gene p21Waf1/Cip1 plays a role in signaling cellular growth arrest. In response to DNA damage, p21 is induced by the p53 gene, thereby playing direct mediating p53-induced G1 Alterations this may adversely affect regulation of proliferation and increase susceptibility for cancer. Two polymorphisms have previously been characterized gene: C→A transversion at codon 31 (ser→arg) C→T transition 20 nucleotides downstream from 3' end exon 3. METHODS...

10.1002/(sici)1097-0142(19970615)79:12<2424::aid-cncr19>3.0.co;2-t article EN Cancer 1997-06-15

No AccessJournal of Urology1 Dec 1992Experimental Autoimmune Cystitis: A Potential Murhne Model for Ulcerative Interstitial Cystitis Arnold D. Bullock, Michael J. Becich, Carl G. Klutke, and Timothy L. Ratliff BullockArnold Bullock , BecichMichael Becich KlutkeCarl Klutke RatliffTimothy View All Author Informationhttps://doi.org/10.1016/S0022-5347(17)37091-XAboutPDF ToolsAdd to favoritesDownload CitationsTrack CitationsPermissionsReprints ShareFacebookLinked InTwitterEmail cystitis is an...

10.1016/s0022-5347(17)37091-x article EN The Journal of Urology 1992-12-01

Abstract Hepatocytes maintained in collagen gels remain differentiated for prolonged periods of time compared to cells on conventional cultures. Previous studies with other culture systems which chemical supplements or substratum modifications enhanced hepatocyte differentiation showed that all these hepatocytes do not respond mitogens. In this study it is shown between two layers mitogens HGF (also known as scatter factor (HGF/SF)) and epidermal growth (EGF). Cell density did affect the...

10.1002/jcp.1041560303 article EN Journal of Cellular Physiology 1993-09-01

The Big Data to Knowledge (BD2K) Center for Causal Discovery is developing and disseminating an integrated set of open source tools that support causal modeling discovery biomedical knowledge from large complex datasets. integrates teams data scientists focused on the refinement existing development new constraint-based Bayesian algorithms based networks, optimization software efficient operation in a supercomputing environment, testing developed using real 3 representative driving projects:...

10.1093/jamia/ocv059 article EN Journal of the American Medical Informatics Association 2015-07-02
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