A5100776132- Genetic Mapping and Diversity in Plants and Animals
- Genetic and phenotypic traits in livestock
- Rice Cultivation and Yield Improvement
- Nitrogen and Sulfur Effects on Brassica
- Cocoa and Sweet Potato Agronomy
- Plant tissue culture and regeneration
- Agricultural pest management studies
- Genetics and Plant Breeding
- Lipid metabolism and biosynthesis
- Plant Molecular Biology Research
- Photosynthetic Processes and Mechanisms
- Genomics, phytochemicals, and oxidative stress
- Plant biochemistry and biosynthesis
- Cancer-related molecular mechanisms research
- GABA and Rice Research
- Genomics and Phylogenetic Studies
- Plant-Microbe Interactions and Immunity
- Genetic diversity and population structure
- Natural Compound Pharmacology Studies
- Animal Behavior and Welfare Studies
- Plant pathogens and resistance mechanisms
- Tannin, Tannase and Anticancer Activities
- Coconut Research and Applications
- Microbial Metabolites in Food Biotechnology
- Bioactive Compounds and Antitumor Agents
Oil Crops Research Institute
2020-2024
Chinese Academy of Agricultural Sciences
2011-2024
Jiangxi Provincial Children's Hospital
2024
Xi'an Jiaotong University
2024
Wageningen University & Research
2021-2024
Binzhou University
2024
Binzhou Medical University
2024
Guiyang Medical University
2024
Weatherford College
2024
First Affiliated Hospital of Xi'an Jiaotong University
2024
We previously developed shinyCircos, an interactive web application for creating Circos diagrams, which has been widely recognized its graphical user interface and ease of use. Here, we introduce shinyCircos-V2.0, upgraded version shinyCircos that includes a new with enhanced usability many features advanced plots. To help users get started provide detailed tutorials example input data sets. The is available online at https://venyao.xyz/shinyCircos/...
Mechanized dry seeded rice can save both labour and water resources. Rice seedling establishment is sensitive to sowing depth while mesocotyl elongation facilitates the emergence of deeply sown seeds. A set 270 accessions, including 170 from mini-core collection Chinese germplasm (C Collection) 100 varieties used in a breeding program for drought resistance (D Collection), was screened lengths seedlings grown (MLw) darkness 5 cm sand culture (MLs). Twenty six accessions (10.53 %) have MLw...
Abstract Development of interactive web applications to deposit, visualize and analyze biological datasets is a major subject bioinformatics. R programming language for data science, which also one the most popular languages used in analysis However, building was great challenge users before Shiny package developed by RStudio company 2012. By compiling code into HTML, CSS JavaScript code, has made it incredibly easy build large community bioinformatics even non-programmers. Over 470 have...
Rapeseed, an allotetraploid oil crop, provides vegetable for human consumption. The growing demand oilseeds has necessitated the development of rapeseed varieties with improved quality. Therefore, a clear understanding genetic basis underlying seed content (SOC) is required. In this study, natural population comprising 204 diverse accessions and recombinant inbred lines (RILs) derived from Brassica napus Sinapis alba via distant hybridization were collected genome-wide association analysis...
Puerarin (Pue) is a kind of isoflavone compound extracted from Pueraria lobata, which has significant antioxidant activity. Excessive use acetaminophen (APAP) can cause oxidative stress in the liver and eventually lead to acute injury. The purpose this study was investigate protective effect mechanism puerarin on APAP-induced damage. In vitro experiments, significantly increased cell activity HepG2 cells, reduced ROS accumulation, alleviated damage mitochondrial dysfunction. vivo studies,...
Abstract Background A run of homozygosity (ROH) is a consecutive tract homozygous genotypes in an individual that indicates it has inherited the same ancestral haplotype from both parents. Genomic inbreeding can be quantified based on ROH. regions enriched with ROH may indicative selection sweeps and are known as islands. We carried out analyses five Chinese indigenous sheep breeds; Altay ( n = 50 individuals), Large-tailed Han 50), Hulun Buir 150), Short-tailed grassland Tibetan using Ovine...
Abstract Plant height is a crucial element related to plant architecture that influences the seed yield of oilseed rape (Brassica napus L.). In this study, we isolated natural B. mutant, namely semi-dwarf mutant (sdw-e), which exhibits 30% reduction in compared with Zhongshuang 11-HP (ZS11-HP). Quantitative trait locus sequencing (QTL-seq) was conducted using two extreme DNA bulks F2 populations Wuchang-2017 derived from ZS11-HP × sdw-e identify QTLs associated height. The result suggested...
Abstract Background Cinnamomum longepaniculatum (Gamble) N. Chao ex H. W. Li, whose leaves produce essential oils, is a traditional Chinese medicine and economically important tree species. In our study, two C . varieties that have significantly different oil contents leaf phenotypes were selected as the materials to investigate secondary metabolism. Result The content between varieties. When results of both transcriptome metabolomic analyses combined, it was found differences related...
Oilseed rape (Brassica napus) with yellow flowers is an attractive ornamental landscape plant during the flowering period, and development of different petal colors has become a breeding objective. Although yellowish flower color common variant observed in field-grown oilseed rape, genetics behind this variation remains unclear. We obtained yellowish-white (ywf) mutant from Zhongshuang 9 (ZS9) by ethyl methanesulfonate mutagenesis (EMS) treatment. Compared ZS9, ywf exhibited lower carotenoid...
Exploration of adaptive evolution organisms in response to environmental change can help understand the evolutionary history species and underlying mechanisms adaptation local environments, thus guiding future conservation programmes. Before introduction Apis mellifera China, eastern honey bees (Apis cerana) were only used for beekeeping this region. In mountains Changbai, populations A. cerana are considered a distinct ecotype which formed through selective pressures area over time.We...
Serine/arginine-rich (SR) proteins are indispensable factors for RNA splicing, and they play important roles in development abiotic stress responses. However, little information on SR genes Brassica napus is available. In this study, 59 were identified classified into seven subfamilies: SR, SCL, RS2Z, RSZ, RS, SR45, SC. each subfamily, the showed relatively conserved structures motifs, but displayed distinct expression patterns different tissues under stress, which might be caused by varied...
Abstract Cadmium (Cd) toxicity is a serious threat to future food security and health safety. To identify genetic factors contributing Cd uptake in wheat, we conducted genome‐wide association study with genotyping from 90K SNP array. A spring wheat diversity panel was planted under normal conditions stress (50 mg Cd/kg soil). The impact of on agronomic traits ranged reduction 16% plant height 93% grain iron content. Individual genotypes showed considerable variation for translocation...
Traits related to flowering time are the most promising agronomic traits that directly impact seed yield and oil quality of rapeseed (Brassica napus L.). Developing early maturity varieties is an important breeding objective in B. napus. Many studies have reported on days flowering, but few budding, bolting, interval between bolting DTF. Therefore, elucidating genetic architecture QTLs genes regulating time, we presented integrated investigation SNP haplotype-based genome-wide association...
The number of teats is related to the nursing ability sows. In present study, we conducted genome-wide association studies (GWAS) for traits teat in Duroc pig population. Two mixed models, one counted and another binary phenotypic traits, were employed analyze seven traits: right (RTN), left (LTN), total (TTN) numbers; maximum on a side (MAX); minus (LR); absolute value LR (ALR); presence symmetry between numbers (SLR). We identified 11, 1, 4, 13, 9 significant SNPs associated with RTN, LTN,...
Salmonella enterica serovar Typhimurium (S. Typhimurium) is one of the common causes human colitis. In present study, two lytic phages vB_SenS-EnJE1 and vB_SenS-EnJE6 were isolated therapeutic effect combination faecal microbiota transplantation (FMT) on S. Typhimurium-induced mouse colitis was investigated. The characteristics genome analysis indicated that they are suitable for phage therapy. Results showed lysis 41/54 strains serotype O4, 46/54 serotypes O4 O9. Severe inflammatory...
Bladder cancer (BC) is the fifth most common malignancy occurring worldwide and a significant cause of cancer-related morbidity mortality. Although BC serious health issue, studies available concerning relationship genes, microRNAs (miRNAs) their host genes has been lacking. In present study, we assessed experimentally validated data from various sources that reported effect miRNA on diseases, targeting mRNAs, combined these with initial transcription factor (TF) binding site predictions...