Tao Ni

ORCID: 0000-0001-7268-0306
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About
Contact & Profiles
Research Areas
  • Axon Guidance and Neuronal Signaling
  • X-ray Diffraction in Crystallography
  • Crystallization and Solubility Studies
  • Photosynthetic Processes and Mechanisms
  • SARS-CoV-2 and COVID-19 Research
  • Advanced Electron Microscopy Techniques and Applications
  • HIV Research and Treatment
  • Cancer-related gene regulation
  • Viral Infections and Immunology Research
  • Lipid Membrane Structure and Behavior
  • Enzyme Structure and Function
  • Virus-based gene therapy research
  • ATP Synthase and ATPases Research
  • Viral gastroenteritis research and epidemiology
  • Streptococcal Infections and Treatments
  • Toxoplasma gondii Research Studies
  • Signaling Pathways in Disease
  • HIV/AIDS drug development and treatment
  • Asymmetric Synthesis and Catalysis
  • Autophagy in Disease and Therapy
  • Herpesvirus Infections and Treatments
  • Bacteriophages and microbial interactions
  • Protein Structure and Dynamics
  • Oxidative Organic Chemistry Reactions
  • Clostridium difficile and Clostridium perfringens research

Centre for Human Genetics
2016-2025

University of Oxford
2016-2025

University of Hong Kong
2023-2025

Nanjing Medical University
2024-2025

Jiangsu Province Hospital
2024-2025

Hebei North University
2025

Sichuan University of Science and Engineering
2024

Shandong University
2023

East China University of Science and Technology
2020-2022

Applied Radar (United States)
2022

Modification of target molecules by ubiquitin or ubiquitin-like (Ubl) proteins is generally reversible. Little known, however, about the physiological function reverse reaction, deconjugation. Atg8 a unique Ubl protein whose conjugation lipid phosphatidylethanolamine (PE). functions in formation double-membrane autophagosomes, central step well-conserved intracellular degradation pathway macroautophagy (hereafter autophagy). Here we show that deconjugation Atg8−PE cysteine protease Atg4...

10.4161/auto.19652 article EN Autophagy 2012-06-23

The ongoing global pandemic of coronavirus disease 2019 (COVID-19) resulted from the outbreak SARS-CoV-2 in December 2019. Currently, multiple efforts are being made to rapidly develop vaccines and treatments fight COVID-19. Current vaccine candidates use inactivated viruses; therefore, it is important understand architecture SARS-CoV-2. We have genetically structurally characterized β-propiolactone-inactivated viruses a propagated purified clinical strain observed that virus particles...

10.1016/j.str.2020.10.001 article EN cc-by Structure 2020-10-15

Since the outbreak of SARS-CoV-2 pandemic, there have been intense structural studies on purified viral components and inactivated viruses. However, ultrastructural evidence how infection progresses in native cellular context is scarce, a lack comprehensive knowledge replicative cycle. To correlate cytopathic events induced by with virus replication processes frozen-hydrated cells, we established unique multi-modal, multi-scale cryo-correlative platform to image Vero cells. This combines...

10.1038/s41467-021-24887-y article EN cc-by Nature Communications 2021-07-30

Coronaviruses remodel the intracellular host membranes during replication, forming double-membrane vesicles (DMVs) to accommodate viral RNA synthesis and modifications

10.1038/s41586-024-07817-y article EN cc-by-nc-nd Nature 2024-08-14

Class A plexins (PlxnAs) act as semaphorin receptors and control diverse aspects of nervous system development plasticity, ranging from axon guidance neuron migration to synaptic organization. PlxnA signaling requires cytoplasmic domain dimerization, but extracellular regulation activation mechanisms remain unclear. Here we present crystal structures (PlxnA1, PlxnA2, PlxnA4) full ectodomains. Domains 1–9 form a ring-like conformation which the C-terminal 10 points away. All our ectodomain...

10.1016/j.neuron.2016.06.018 article EN cc-by Neuron 2016-07-08

How thylakoid membranes are generated to form a metabolically active membrane network and how orchestrate the insertion localization of protein complexes for efficient electron flux remain elusive. Here, we develop method modulate biogenesis in rod-shaped cyanobacterium Synechococcus elongatus PCC 7942 by modulating light intensity during cell growth, probe spatial-temporal stepwise process cells. Our results reveal that plasma regularly arranged concentric layers have no physical...

10.1038/s41467-021-23680-1 article EN cc-by Nature Communications 2021-06-09

Carboxysomes are a family of bacterial microcompartments in cyanobacteria and chemoautotrophs. They encapsulate Ribulose 1,5-bisphosphate carboxylase/oxygenase (Rubisco) carbonic anhydrase catalyzing carbon fixation inside proteinaceous shell. How Rubisco complexes pack within the carboxysomes is unknown. Using cryo-electron tomography, we determine distinct 3D organization two distant α-carboxysomes from marine α-cyanobacterium Cyanobium sp. PCC 7001 where Rubiscos organized three...

10.1038/s41467-022-32004-w article EN cc-by Nature Communications 2022-07-25

Abstract Carboxysomes are a paradigm of self-assembling proteinaceous organelles found in nature, offering compartmentalisation enzymes and pathways to enhance carbon fixation. In α-carboxysomes, the disordered linker protein CsoS2 plays an essential role carboxysome assembly Rubisco encapsulation. Its mechanism action, however, is not fully understood. Here we synthetically engineer α-carboxysome shells using minimal shell components determine cryoEM structures these decipher principle The...

10.1038/s41467-023-41211-y article EN cc-by Nature Communications 2023-09-07

Background. In recent decades, the GII.4 norovirus genotype has predominated in epidemics worldwide and been associated with an increased rate of evolutionary change. 2014, a novel GII.17 variant emerged persisted, causing large outbreaks gastroenteritis China sporadic infections globally. The origin, evolution, transmission history this new are largely unknown. Methods. We generated 103 full capsid 8 whole-genome sequences strains collected between August 2013 November 2015 Guangdong,...

10.1093/infdis/jiw208 article EN The Journal of Infectious Diseases 2016-05-24

High-resolution cryoET structures of native HIV-1 capsid in complex with IP6 and CypA are enabled by viral membrane perforation.

10.1126/sciadv.abj5715 article EN cc-by-nc Science Advances 2021-11-19

Methane-oxidizing bacteria play a central role in greenhouse gas mitigation and have potential applications biomanufacturing. Their primary metabolic enzyme, particulate methane monooxygenase (pMMO), is housed copper-induced intracytoplasmic membranes (ICMs), of which the function biogenesis are not known. We show by serial cryo-focused ion beam (cryoFIB) milling/scanning electron microscope (SEM) volume imaging lamellae-based cellular cryo-electron tomography (cryoET) that these ICMs...

10.1038/s41467-022-32752-9 article EN cc-by Nature Communications 2022-09-05

Abstract We reported herein an iridium/silver/acid ternary catalytic system to access bisbenzannulated [6,6]‐spiroketals in high efficiency with generally diastereo‐ and enantioselectivities (up >20 : 1 dr, >99 % ee). In this procedure, readily available o ‐alkynylacetophenones undergo cycloisomerization generate isochromenes situ that participate stereoselective allylation/spiroketalization sequence 2‐(1‐hydroxyallyl)phenols. Meanwhile, 2‐(1‐hydroxyallyl)anilines were also compatible...

10.1002/anie.202210207 article EN Angewandte Chemie International Edition 2022-08-04

Kindlins co-activate integrins alongside talin. They possess, like talin, a FERM domain (4.1-erythrin–radixin–moiesin domain) comprising F0–F3 subdomains, but with pleckstrin homology (PH) inserted in the F2 subdomain that enables membrane association. We present crystal structure of murine kindlin-3 PH determined at resolution 2.23 Å and characterise its lipid binding using biophysical computational approaches. Molecular dynamics simulations suggest flexibility loops connecting β-strands...

10.1042/bcj20160791 article EN cc-by Biochemical Journal 2016-12-15

Abstract Coxsackievirus A10 (CV-A10) is responsible for an escalating number of severe infections in children, but no prophylactics or therapeutics are currently available. KREMEN1 (KRM1) the entry receptor largest receptor-group hand-foot-and-mouth disease causing viruses, which includes CV-A10. We report here structures CV-A10 mature virus alone and complex with KRM1 as well A-particle. The spans viral canyon a large footprint on surface. has some overlap that seen neonatal Fc complexed...

10.1038/s41467-019-13936-2 article EN cc-by Nature Communications 2020-01-07

An unprecedented iridium-catalyzed asymmetric [4 + 3] cycloaddition of racemic 4-indolyl allylic alcohols with azomethine ylides is reported. The ability acid promoter zinc triflate to perform multiple roles the key factor for success this strategy. This method provides scalable and efficient access biologically important azepino[3,4,5-cd] indoles in good yields generally excellent diastereo- enantioselectivities (up >20:1 dr >99% ee). Mild reaction conditions, easily accessible substrates...

10.1021/acs.orglett.0c04132 article EN Organic Letters 2021-01-06

Abstract Owing to their adjustable redox‐active sites, designable structures high porosity, and fully activated organic ligands, pristine metal‐organic frameworks (MOFs) have been widely utilized as advanced electrode materials (i. e., both anodes cathodes) for sodium‐ion batteries (SIBs) satisfied the insertion/extraction larger size mass of Na + cations, achieving significant progresses with excellent electrochemical performance in energy storage devices. Here, recent advances on MOFs...

10.1002/batt.202400138 article EN Batteries & Supercaps 2024-04-29

Abstract Perforin-2 (PFN2, MPEG1) is a pore-forming protein that acts as first line of defense in the mammalian immune system, rapidly killing engulfed microbes within phagolysosome macrophages. PFN2 self-assembles into hexadecameric pre-pore rings transition upon acidification pores damaging target cell membranes. Here, using high-speed atomic force microscopy (HS-AFM) imaging and line-scanning molecular dynamics simulation, we elucidate to pore pathways dynamics. Upon acidification,...

10.1038/s41467-022-32757-4 article EN cc-by Nature Communications 2022-08-26

Highlights•Subtomogram averaging of ChAdOx1 nCoV-19 spikes in situ at subnanometer resolution•HexaPro stabilizes the one-RBD-up prefusion spike conformation•In cryo-ET structure antigens provides rationale for vaccine optimizationSummaryVaccines against severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) have been proven to be an effective means decreasing COVID-19 mortality, hospitalization rates, and transmission. One vaccines deployed worldwide is nCoV-19, which uses adenovirus...

10.1016/j.isci.2023.107882 article EN cc-by iScience 2023-09-12

There are only eight approved small molecule antiviral drugs for treating COVID-19. Among them, four nucleotide analogues (remdesivir, JT001, molnupiravir, and azvudine), while the other protease inhibitors (nirmatrelvir, ensitrelvir, leritrelvir, simnotrelvir-ritonavir). Antiviral resistance, unfavourable drug‒drug interaction, toxicity have been reported in previous studies. Thus there is a dearth of new treatment options SARS-CoV-2. In this work, three-tier cell-based screening was...

10.1016/j.apsb.2024.05.026 article EN cc-by-nc-nd Acta Pharmaceutica Sinica B 2024-05-31

Diabetes is an extremely costly disease, one-third of which are attributed to the management diabetic foot disease including chronic, non-healing, ulcers (DFUs). Therefore, much effort needed understand pathogenesis DFUs and novel therapeutics. We utilized exosome staining confirm interaction between fibroblast-derived exosomes macrophages. Subsequently, we employed public data qPCR screen for upregulated miRNAs in DFUs. The relationship was validate miR-93-5 ATG16L1 through prediction...

10.1016/j.bbadis.2024.167640 article EN cc-by-nc Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease 2025-01-05

Purpose: KLK7, also known as Kallikrein 7, is a secreted enzyme classified serine protease. Earlier studies have indicated that KLK10, and KLK11 are linked to the survival rates immune reactions of individuals with papillary thyroid cancer (PTC). This research examines investigating its role expression, evaluates viability treatment target for PTC. Methods: Initially, we examined expression possible functions KLK7 in PTC using bioinformatics techniques. Researchers impact on characteristics...

10.7150/jca.101555 article EN cc-by-nc Journal of Cancer 2025-02-11

Delayed diabetic wound (DBW) healing is a severe complication of diabetes, characterized notably by peripheral sensory neuropathy. The underlying mechanism nerves and DBW remain unclear. Here, we demonstrate the role calcitonin gene-related peptide (CGRP) in regulating epithelialization angiogenesis DBW. Subsequently, design synthesis gelatin methacryloyl (GelMA-CGRP) hydrogel that slowly releases CGRP, evaluated its effect on promoting healing. results show CGRP abnormally downregulated...

10.1016/j.actbio.2025.02.046 article EN cc-by-nc-nd Acta Biomaterialia 2025-02-01
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