Rupak Shivakoti

ORCID: 0000-0002-2773-9310
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About
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Research Areas
  • HIV-related health complications and treatments
  • Tuberculosis Research and Epidemiology
  • Pregnancy and Medication Impact
  • Nutritional Studies and Diet
  • HIV/AIDS Research and Interventions
  • Pneumocystis jirovecii pneumonia detection and treatment
  • Reproductive System and Pregnancy
  • Diagnosis and treatment of tuberculosis
  • Virology and Viral Diseases
  • Pharmacological Effects and Toxicity Studies
  • HIV Research and Treatment
  • Global Maternal and Child Health
  • COVID-19 Clinical Research Studies
  • Respiratory viral infections research
  • Reproductive tract infections research
  • Pregnancy and preeclampsia studies
  • Health disparities and outcomes
  • Infant Nutrition and Health
  • Vitamin D Research Studies
  • Diet and metabolism studies
  • Pneumonia and Respiratory Infections
  • Trace Elements in Health
  • Healthcare Systems and Reforms
  • Syphilis Diagnosis and Treatment
  • Infant Health and Development

Columbia University
2018-2025

Columbia University Irving Medical Center
2025

Johns Hopkins Medicine
2014-2021

Johns Hopkins University
2012-2021

B. J. Medical College & Sassoon Hospital
2018

University of Baltimore
2014

<h3>Importance</h3> Higher intake of dietary fiber has been associated with lower inflammation, but whether there are differences in this association by source (ie, cereal, vegetable, or fruit) not studied to date. <h3>Objectives</h3> To evaluate the associations total and fruit intake) inflammation mediates inverse between cardiovascular disease (CVD). <h3>Design, Setting, Participants</h3> At baseline visit (1989-1990) 4125 adults aged 65 years older an ongoing US cohort study, was...

10.1001/jamanetworkopen.2022.5012 article EN cc-by-nc-nd JAMA Network Open 2022-03-31

Maternal HIV infection can affect placental immunology and expression of the neonatal crystallizable fragment receptor (FcRn), which allows transplacental antibody transfer. This study delineated differences in FcRn T-cell by status, with or without viral suppression. observational cohort Pune, India, followed pregnant women through 1 year postpartum; 42 had placenta collected, stratified status. was analyzed Western blot (normalized GADPH) compared using ImageJ. Placental CD4/CD8 abundance...

10.1093/ofid/ofaf047 article EN cc-by-nc-nd Open Forum Infectious Diseases 2025-01-31

This study investigates the feasibility and acceptability of a powder-based supplement for breastfeeding HIV-exposed uninfected children to inform larger trial (MIGH-T MO study). Ten mothers living with HIV their (6 weeks-20 months) at Tygerberg Hospital, Cape Town, South Africa, participated. The received daily potato maltodextrin mixed expressed breast milk 4 weeks, serving as placebo control upcoming trial. Outcomes assessed included feasibility, acceptability, adherence, health effects,...

10.1177/30502225251309003 article EN 2025-02-01

Two doses of measles, mumps, and rubella (MMR) vaccine are 97% effective against but waning antibody immunity to measles failure the 2-dose occur. We administered a third MMR dose (MMR3) young adults assessed immunogenicity over 1 year.Measles virus (MeV) neutralizing concentrations, cell-mediated (CMI), immunoglobulin G (IgG) avidity were at baseline month year after MMR3 receipt.Of 662 subjects baseline, (0.2%) was seronegative for MeV-neutralizing antibodies (level, <8 mIU/mL), 23 (3.5%)...

10.1093/infdis/jiv555 article EN public-domain The Journal of Infectious Diseases 2015-11-23

Bacterial vaginosis (BV), a clinical condition characterized by decreased vaginal Lactobacillus spp., is difficult to treat. We examined associations between micronutrient intake and low-Lactobacillus microbiota as assessed molecular methods (termed "molecular-BV").This cross-sectional analysis utilized data collected at the baseline visit of Hormonal Contraception Longitudinal Study, cohort reproductive-aged women followed over 2 years while initiating or ceasing hormonal contraception...

10.1186/s12978-019-0814-6 article EN cc-by Reproductive Health 2019-10-22

<h3>Importance</h3> The association of elevated levels specific inflammatory markers during pregnancy with adverse birth outcomes and infant growth could indicate pathways for potential interventions. <h3>Objective</h3> To evaluate whether higher certain are associated preterm (PTB), low weight (LBW), deficits. <h3>Design, Setting, Participants</h3> In this cohort study pregnant women or without HIV, 218 mother-infant pairs were followed up from through 12 months post partum June 27, 2016,...

10.1001/jamanetworkopen.2021.40584 article EN cc-by-nc-nd JAMA Network Open 2021-12-22

Numerous micronutrients have immunomodulatory roles that may influence risk of tuberculosis (TB), but the association between baseline micronutrient deficiencies and incident TB after antiretroviral therapy (ART) initiation in HIV-infected individuals is not well characterized.We conducted a case-cohort study (n = 332) within randomized trial comparing 3 ART regimens 1571 HIV treatment-naive adults from 9 countries. A subcohort 30 patients was randomly selected each country 270). Cases 77;...

10.1097/qai.0000000000001308 article EN JAIDS Journal of Acquired Immune Deficiency Syndromes 2017-02-10

Recovery from measles results in life-long protective immunity. To understand induction of long-term immunity, rhesus macaques were studied for 6 months after infection with wild-type virus (MeV). Infection caused viremia and rash, clearance infectious by day 14. MeV RNA persisted PBMCs 30–90 days lymphoid tissue most often B cells but was rarely detected BM. Antibody neutralizing activity binding specificity nucleocapsid (N), hemagglutinin (H), fusion proteins appeared the rash avidity...

10.1172/jci.insight.134992 article EN cc-by JCI Insight 2020-01-14

ABSTRACT The innate immune response to viral infection frequently includes induction of type I interferons (IFN), but many viruses have evolved ways block this and increase virulence. In vitro studies IFN production after susceptible cells with measles virus (MeV) often reported greater synthesis vaccine than wild-type strains MeV. However, the possible presence in laboratory stocks 5′ copy-back defective interfering (DI) RNAs that induce independent standard has confounded interpretation...

10.1128/jvi.00261-13 article EN Journal of Virology 2013-05-16

The innate immune response to viral infections often includes induction of types I and III interferons (IFNs) production antiviral proteins. Measles is a severe virus-induced rash disease, but in vitro studies suggest that the absence defective interfering RNAs, neither wild-type (WT) nor vaccine strains measles virus (MeV) induce IFN. To determine whether IFN produced vivo, we studied tissues from macaques infected with or WT MeV using quantitative reverse transcriptase-polymerase chain...

10.1089/jir.2014.0122 article EN Journal of Interferon & Cytokine Research 2014-12-17

SETTING: Pune, India.OBJECTIVES: To estimate the prevalence and risk factors of pre-diabetes mellitus (DM) DM, its associations with clinical presentation tuberculosis (TB).DESIGN: Screening for DM was conducted among adults (age  18 years) confirmed TB between December 2013 January 2017. We used multinomial regression to evaluate pre-DM (glycated hemoglobin [HbA1c] 5.7–6.5% or fasting glucose 100–125 mg/dl) (HbA1c 6.5% 126 mg/dl random blood &gt; 200 self-reported history/treatment)...

10.5588/ijtld.17.0474 article EN The International Journal of Tuberculosis and Lung Disease 2017-12-01

Persons with HIV (PWH) have an increased risk of cardiovascular disease (CVD) compared to HIV-seronegative individuals (SN). Inflammation contributes this but the role lipid mediators, central roles in inflammation, infection remain be established; further aspirin reduces CVD general population through production some these anti-inflammatory they not been studied PWH.

10.1016/j.ebiom.2023.104468 article EN cc-by EBioMedicine 2023-02-13

A case-cohort analysis of human immunodeficiency virus (HIV)–infected individuals receiving antiretroviral therapy (ART) was performed within a multicountry randomized trial (PEARLS) to assess the prevalence persistently elevated C-reactive protein (CRP) levels, based on serial measurements CRP and their association with HIV clinical failure. level in plasma (defined as ≥ 5 mg/L at both baseline 24 weeks after ART initiation) observed 50 205 (24%). but not an only single time point...

10.1093/infdis/jiv573 article EN The Journal of Infectious Diseases 2015-11-29

Background. Anemia is a known risk factor for clinical failure following antiretroviral therapy (ART). Notably, anemia and inflammation are interrelated, recent studies have associated elevated C-reactive protein (CRP), an marker, with adverse human immunodeficiency virus (HIV) treatment outcomes, yet their joint effect not known. The objective of this study was to assess prevalence factors in HIV infection determine whether CRP jointly predict post-ART. Methods. A case-cohort (N = 470 [236...

10.1093/cid/civ265 article EN Clinical Infectious Diseases 2015-03-31

A case-cohort study, within a multi-country trial of antiretroviral therapy (ART) efficacy (Prospective Evaluation Antiretrovirals in Resource Limited Settings (PEARLS)), was conducted to determine if pre-ART serum selenium deficiency is independently associated with human immunodeficiency virus (HIV) disease progression after ART initiation. Cases were HIV-1 infected adults either clinical failure (incident World Health Organization (WHO) stage 3, 4 or death by 96 weeks) virologic 24...

10.3390/nu6115061 article EN Nutrients 2014-11-13

Preterm birth (PTB) rates are high in human immunodeficiency virus (HIV)-infected populations, even when on treatment. Still, only a subset of all births HIV-infected pregnant women result PTB, suggesting that risk factors other than HIV infection itself also important. Inflammation is known factor uninfected but its role population have not been studied; addition, the immune pathways involved clear and noninvasive markers with predictive value lacking. Our objective was to determine...

10.1093/cid/ciy253 article EN Clinical Infectious Diseases 2018-03-23

Introduction Host lipids play important roles in tuberculosis (TB) pathogenesis. Whether host at TB treatment initiation (baseline) affect subsequent outcomes has not been well characterised. We used unbiased lipidomics to study the prospective association of with failure. Methods A case–control (n=192), nested within a cohort study, was investigate baseline plasma failure among adults pulmonary TB. Cases (n=46) were defined as failure, while controls (n=146) those without Complex and...

10.1183/13993003.04532-2020 article EN European Respiratory Journal 2021-06-17

Abstract Background. We assessed immune activation after antiretroviral therapy (ART) initiation to understand clinical failure in diverse settings. Methods. performed a case-control study ACTG Prospective Evaluation of Antiretrovirals Resource-Limited Settings (PEARLS). Cases were defined as incident World Health Organization Stage 3 or 4 human immunodeficiency virus (HIV) disease death, analyzed from ART weeks 24 (ART24) 96. Controls randomly selected. Interleukin (IL)-6, interferon...

10.1093/ofid/ofw118 article EN cc-by-nc-nd Open Forum Infectious Diseases 2016-01-01

Background Recent studies in adults have characterized differences systemic inflammation between with and without latent tuberculosis infection (LTBI+ vs . LTBI−). Potential by LTBI status has not been assess pregnant women. Methods We conducted a cohort study of 155 LTBI+ 65 LTBI− women, stratified HIV status, attending an antenatal clinic Pune, India. was assessed interferon gamma release assay. Plasma used to measure markers using immunoassays: IFN β , CRP, AGP, I-FABP, γ IL-1 soluble...

10.3389/fimmu.2020.587617 article EN cc-by Frontiers in Immunology 2021-01-27

COVID-19 mortality is increased in patients with diabetes. A common hypothesis that the relationship of inflammation differs by diabetes status.

10.1210/clinem/dgac003 article EN The Journal of Clinical Endocrinology & Metabolism 2022-01-06
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