Yijiang Chen

ORCID: 0000-0002-3224-4339
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About
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Research Areas
  • Advanced Fiber Laser Technologies
  • Nonlinear Photonic Systems
  • Nonlinear Waves and Solitons
  • Advanced Text Analysis Techniques
  • Language, Metaphor, and Cognition
  • Natural Language Processing Techniques
  • Optical Network Technologies
  • Radiomics and Machine Learning in Medical Imaging
  • AI in cancer detection
  • Photonic Crystal and Fiber Optics
  • Systemic Sclerosis and Related Diseases
  • Photonic and Optical Devices
  • Speech Recognition and Synthesis
  • Speech and Audio Processing
  • Advanced Fiber Optic Sensors
  • Colorectal Cancer Screening and Detection
  • Multimodal Machine Learning Applications
  • Lung Cancer Treatments and Mutations
  • Single-cell and spatial transcriptomics
  • Semiconductor Lasers and Optical Devices
  • Domain Adaptation and Few-Shot Learning
  • Music and Audio Processing
  • Cancer Genomics and Diagnostics
  • Sentiment Analysis and Opinion Mining
  • Renal and Vascular Pathologies

Northwestern Polytechnical University
2025

Stanford University
2024

The University of Queensland
2024

Xiamen University
2011-2024

Case Western Reserve University
2020-2024

Zhejiang University of Science and Technology
2024

Southeast University
2024

Park University
2022

Beijing Institute of Technology
2022

Wuhan University
2022

The application of deep learning for automated segmentation (delineation boundaries) histologic primitives (structures) from whole slide images can facilitate the establishment novel protocols kidney biopsy assessment. Here, we developed and validated networks structures on biopsies nephrectomies. For development, examined 125 Minimal Change Disease collected across 29 NEPTUNE enrolling centers along with 459 stained Hematoxylin & Eosin (125), Periodic Acid Schiff Silver (102), Trichrome...

10.1016/j.kint.2020.07.044 article EN cc-by-nc-nd Kidney International 2020-08-21
Debora L. Gisch Michelle Brennan Blue B. Lake Jeannine Basta Mark S. Keller and 95 more Ricardo Melo Ferreira Shreeram Akilesh Reetika Ghag Charles Lu Ying‐Hua Cheng Kimberly S. Collins Samir V. Parikh Brad H. Rovin Lynn W. Robbins Lisa Stout Kimberly Y. Conklin Dinh Diep Bo Zhang Amanda Knoten Daria Barwinska Mahla Asghari Angela R. Sabo Michael J. Ferkowicz Timothy A. Sutton Katherine J. Kelly Ian H. de Boer Sylvia E. Rosas Krzysztof Kiryluk Jeffrey B. Hodgin Fadhl Alakwaa Seth Winfree Nichole Jefferson Aydın Türkmen Joseph P. Gaut Nils Gehlenborg Carrie L. Phillips Tarek M. El‐Achkar Pierre C. Dagher Takashi Hato Kun Zhang Jonathan Himmelfarb Matthias Kretzler Shamim Mollah Blue B. Lake Alexander Morales Isaac E. Stillman Stewart H. Lecker Steve Bogen Ashish Verma Guanghao Yu Insa M. Schmidt Joel Henderson Laurence H. Beck Pranav Yadati Sushrut S. Waikar Afolarin Amodu Shana Maikhor Titlayo Ilori Mia R. Colona Astrid Weins Gearoid M. McMahon Nir Hacohen Anna Greka Jamie L. Marshall Paul Hoover Vidya Sankar Viswanathan Dana C. Crawford Mark P. Aulisio William S. Bush Yijiang Chen Anant Madabhushi Charles M. O’Malley Crystal A. Gadegbeku Dianna Sendrey Emilio D. Poggio John O’Toole John R. Sedor Jonathan J. Taliercio Lakeshia Bush Leal Herlitz Ellen L. Palmer Jane Nguyen Kassandra Spates-Harden Leslie Cooperman Stacey E. Jolly Carissa Vinovskis Andrew S. Bomback Jonathan Barasch Krzysztof Kiryluk Paul S. Appelbaum Vivette D. D’Agati Cecilia Berrouet Karla Mehl Maya Sabatello Ning Shang Olivia Balderes Pietro A. Canetta Satoru Kudose Joana P. Gonçalves Lukasz G. Migas

There is a need to define regions of gene activation or repression that control human kidney cells in states health, injury, and repair understand the molecular pathogenesis disease design therapeutic strategies. Comprehensive integration expression with epigenetic features regulatory elements remains significant challenge. We measure dual single nucleus RNA chromatin accessibility, DNA methylation, H3K27ac, H3K4me1, H3K4me3, H3K27me3 histone modifications decipher landscape regulation...

10.1038/s41467-023-44467-6 article EN cc-by Nature Communications 2024-01-10

Inconsistencies in the preparation of histology slides and whole-slide images (WSIs) may lead to challenges with subsequent image analysis machine learning approaches for interrogating WSI. These variabilities are especially pronounced multicenter cohorts, where batch effects (i.e. systematic technical artifacts unrelated biological variability) introduce biases algorithms. To date, manual quality control (QC) has been de facto standard dataset curation, but remains highly subjective is too...

10.1002/path.5590 article EN The Journal of Pathology 2020-11-16

Applying deep learning to predict patient prognostic survival outcomes using histological whole-slide images (WSIs) and genomic data is challenging due the morphological transcriptomic heterogeneity present in tumor microenvironment. Existing learning-enabled methods often exhibit biases, primarily because knowledge used guide directional feature extraction from WSIs may be irrelevant or incomplete. This results a suboptimal sometimes myopic understanding of overall pathological landscape,...

10.1109/jbhi.2025.3548048 article EN PubMed 2025-03-05

10.1109/icassp49660.2025.10888193 article EN ICASSP 2022 - 2022 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP) 2025-03-12

PURPOSE Artificial intelligence (AI) holds significant promise for improving cancer diagnosis and treatment. Here, we present a foundation AI model prognosis prediction on the basis of standard hematoxylin eosin–stained histopathology slides. METHODS In this multinational cohort study, developed models to predict from images patients with GI cancers. First, trained using over 130 million patches 104,876 whole-slide self-supervised learning. Second, fine-tuned deep learning predicting...

10.1200/jco-24-01501 article EN Journal of Clinical Oncology 2025-04-01

This article investigates how choosing a different hash function might affect the overall performance of blockchain. We focus on selection for Ethereum and carry out extensive experiments to evaluate change after replacement function. Our findings indicate that some metrics blockchain be significantly affected by used. suggests specific may not trivial decision designing

10.1109/tem.2019.2932202 article EN IEEE Transactions on Engineering Management 2019-09-24

Key Points Computational image analysis allows for the extraction of new information from whole-slide images with potential clinical relevance. Peritubular capillary (PTC) density is decreased in areas interstitial fibrosis and tubular atrophy when measured fractional space. PTC shape (aspect ratio) associated outcome glomerular diseases. Background The association between peritubular disease progression has been studied a variety kidney diseases using immunohistochemistry. However, other...

10.34067/kid.0000000000000116 article EN cc-by-nc-nd Kidney360 2023-04-05

The analytical solutions to differential equations governing nonlinear four-photon mixing in optical fibers are presented for the general case of depleted pump power. expressions reduce those derived earlier with assumption nondepleted We find that maximum power available conversion from waves signal resulting a third-order nonlinearity depends on index mismatch and required achieving possible transfer is function frequency shift.

10.1364/ol.14.000087 article EN Optics Letters 1989-01-01

Deep learning (DL), a class of approaches involving self-learned discriminative features, is increasingly being applied to digital pathology (DP) images for tasks such as disease identification and segmentation tissue primitives (eg, nuclei, glands, lymphocytes). One application DP in telepathology, which involves digitally transmitting slides over the Internet secondary diagnosis by an expert at remote location. Unfortunately, places benefiting most from telepathology often have poor...

10.1200/cci.19.00068 article EN cc-by JCO Clinical Cancer Informatics 2020-03-10

The escalating degradation of urban eco-environments has underscored the significance ecological security in sustainable development. Green infrastructure bridges green spaces cities and increases ecosystem connectivity, thereby optimizing patterns. This study uses Nanjing as a case adopts research paradigm that involves identifying sources, constructing resistance surfaces, subsequently extracting corridors within pattern. method amalgamates evaluation supply demand, leading to...

10.34133/ehs.0179 article EN cc-by Ecosystem Health and Sustainability 2024-01-01

Exact solutions to the equations describing general nonlinear four-wave mixing (including parametric and three-wave sum-frequency generation) in optical fibers are presented. This complements our earlier research on four-photon [ Opt. Lett.14, 87 ( 1989)].

10.1364/josab.6.001986 article EN Journal of the Optical Society of America B 1989-11-01
Tarek M. El‐Achkar Michael T. Eadon Matthias Kretzler Jonathan Himmelfarb Blue B. Lake and 95 more Kun Zhang Stewart H. Lecker Alexander Morales Steve Bogen Afolarin Amodu Laurence H. Beck Joel Henderson Titlayo Ilori Shana Maikhor Ingrid Onul Insa M. Schmidt Ashish Verma Sushrut S. Waikar Pranav Yadati Guanghao Yu Mia R. Colona Gearoid M. McMahon Nir Hacohen Anna Greka Paul Hoover Jamie L. Marshall Mark P. Aulisio William S. Bush Yijiang Chen Dana C. Crawford Anant Madabhushi Vidya Sankar Viswanathan Lakeshia Bush Leslie Cooperman Crystal A. Gadegbeku Leal Herlitz Stacey E. Jolly Jane Nguyen Charles M. O’Malley John O’Toole Ellen L. Palmer Emilio D. Poggio Kassandra Spates-Harden John R. Sedor Dianna Sendrey Jonathan J. Taliercio Paul S. Appelbaum Olivia Balderes Jonathan Barasch Cecilia Berroue Andrew S. Bomback Pietro A. Canetta Vivette D. D’Agati Krzysztof Kiryluk Satoru Kudose Karla Mehl Maya Sabatello Ning Shang Joana P. Gonçalves Roy Lardenoije Lukasz G. Migas Raf Van de Plas Helmut G. Rennke Evren U. Azeloglu Kirk N. Campbell Steven G. Coca Cijang He John Cijiang He Srinivas Ravi Iyengar Seanee Lefferts Girish N. Nadkarni Marissa Patel Joji Tokita Stephen A. Ward Yuguang Xiong Abraham Verdoes Angela R. Sabo Daria Barwinska Debora L. Gisch James C. Williams Katherine J. Kelly Kenneth W. Dunn Mahla Asghari Michael T. Eadon Michael J. Ferkowicz Pierre C. Dagher Ricardo Melo Ferreira Seth Winfree Sharon B. Bledsoe Stephanie Wofford Tarek M. El‐Achkar Timothy A. Sutton William S. Bowen Ying‐Hua Cheng Austen Slade Elizabeth Record Ying‐Hua Cheng Katy Börner Bruce Herr Yashvardhan Jain

10.1053/j.ajkd.2023.08.015 article EN publisher-specific-oa American Journal of Kidney Diseases 2023-10-13

It is shown that the black solitons in an optical fiber or a uniform medium with arbitrary nonlinearity are all stable. The conclusion from analytical stability analysis consistent of numerical simulations. This then dismisses previous criterion suggests saturable nonlinear can be unstable.

10.1364/ol.21.000462 article EN Optics Letters 1996-04-01

Propagation of dark solitons in nonlinear media that include gain and loss is investigated. Two-photon absorption shown to lead dark-soliton broadening attenuation, whereas (such as arising from stimulated Raman scattering) their narrowing amplification. The relations describing the adiabatic evolution weakly perturbed are presented. In comparison with fundamental bright solitons, be less sensitive perturbations. Stationary propagation also found possible presence both amplification, but it...

10.1364/ol.16.001933 article EN Optics Letters 1991-12-15

10.1016/j.engappai.2015.10.014 article EN Engineering Applications of Artificial Intelligence 2015-12-04

Weijie Chen, Yongzhu Chang, Rongsheng Zhang, Jiashu Pu, Guandan Le Yadong Xi, Yijiang Chang Su. Proceedings of the 60th Annual Meeting Association for Computational Linguistics (Volume 1: Long Papers). 2022.

10.18653/v1/2022.acl-long.404 article EN cc-by Proceedings of the 60th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers) 2022-01-01

Spatial solitons of Maxwell's equations propagating in an isotropic Kerr material differ significantly from the classical soliton nonlinear Schrödinger equation unless electric field is linearly polarized along a geometric axis intensity pattern. In general polarization state changes continuously as beam propagates, with period millimeters for highly materials. This effect due to form birefringence soliton-induced waveguide. Equivalently, composed both TE and TM modes axially uniform...

10.1364/ol.19.000524 article EN Optics Letters 1994-04-15

Abstract Metaphor has significant implications for revealing cognitive and thinking mechanisms. Visual metaphor image generation not only presents metaphorical connotations intuitively but also reflects AI’s understanding of through the generated images. This paper investigates task generating images based on text with visual metaphors. We explore create a dataset containing sentences Then, we propose framework understanding, which is more tailored to essence metaphor, better utilizes...

10.1007/s11063-024-11609-w article EN cc-by Neural Processing Letters 2024-04-16

Abstract Batch effects (BEs) refer to systematic technical differences in data collection unrelated biological variations whose noise is shown negatively impact machine learning (ML) model generalizability. Here we release CohortFinder ( http://cohortfinder.com ), an open-source tool aimed at mitigating BEs via data-driven cohort partitioning. We demonstrate improves ML performance downstream digital pathology and medical image processing tasks. freely available for download cohortfinder.com.

10.1038/s44303-024-00018-2 article EN cc-by npj Imaging 2024-07-01

Visual scoring of tubular damage has limitations in capturing the full spectrum structural changes and prognostic potential. We investigate if computationally quantified features can enhance prognostication reveal spatial relationships with interstitial fibrosis.

10.1101/2024.07.19.24310619 preprint EN medRxiv (Cold Spring Harbor Laboratory) 2024-07-21
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