Sebastian Niezen

ORCID: 0000-0002-9297-8828
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About
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Research Areas
  • Liver Disease Diagnosis and Treatment
  • Liver Disease and Transplantation
  • Diet, Metabolism, and Disease
  • Single-cell and spatial transcriptomics
  • Alcohol Consumption and Health Effects
  • Coffee research and impacts
  • Liver Diseases and Immunity
  • Health Literacy and Information Accessibility
  • Immune cells in cancer
  • Food Security and Health in Diverse Populations
  • Artificial Intelligence in Healthcare
  • Obesity, Physical Activity, Diet
  • Diabetes Treatment and Management
  • Antimicrobial Peptides and Activities
  • Diabetes Management and Research
  • Drug-Induced Hepatotoxicity and Protection
  • Nutritional Studies and Diet
  • Inflammatory Bowel Disease
  • Hepatitis B Virus Studies
  • Social Media in Health Education
  • Nicotinic Acetylcholine Receptors Study
  • Immune responses and vaccinations
  • Fibromyalgia and Chronic Fatigue Syndrome Research
  • Diet and metabolism studies
  • Adipose Tissue and Metabolism

Harvard University
2021-2025

VA Pittsburgh Healthcare System
2025

University of Pittsburgh Medical Center
2023-2025

University of Pittsburgh
2024

Beth Israel Deaconess Medical Center
2021-2024

Universidad Anáhuac
2018-2020

Toni Delorey Carly G.K. Ziegler Graham Heimberg Rachelly Normand Yiming Yang and 95 more Åsa Segerstolpe Domenic Abbondanza Stephen J. Fleming Ayshwarya Subramanian Daniel T. Montoro Karthik A. Jagadeesh Kushal K. Dey Pritha Sen Michal Slyper Yered Pita-Juárez Devan Phillips Jana Biermann Zohar Bloom‐Ackermann Nikolaos Barkas Andrea Ganna James Gomez Johannes C. Melms Igor Katsyv Erica Normandin Pourya Naderi Yeganeh Yury Popov Siddharth S. Raju Sebastian Niezen Linus Tsai Katherine J. Siddle Malika Sud Victoria M. Tran Shamsudheen Karuthedath Vellarikkal Yiping Wang Liat Amir-Zilberstein Deepak Atri Joseph Beechem Olga R. Brook Jonathan Chen Prajan Divakar Phylicia Dorceus J Engreitz Adam L. Essene Donna M. Fitzgerald Robin Fropf Steven Gazal Joshua Gould John Grzyb Tyler Harvey Jonathan L. Hecht Tyler Hether Judit Jané‐Valbuena Michael Leney-Greene Hui Ma Cristin McCabe Daniel E. McLoughlin Eric Miller Christoph Muus Mari Niemi Robert F. Padera Liuliu Pan Deepti Pant Carmel Pe’er Jenna Pfiffner-Borges Christopher J. Pinto Jacob Plaisted Jason Reeves Marty Ross Melissa A. Rudy Erroll H. Rueckert Michelle Siciliano Alexander Sturm Ellen Todres Avinash Waghray Sarah Warren Shuting Zhang Daniel R. Zollinger Lisa A. Cosimi Rajat M. Gupta Nir Hacohen Hanina Hibshoosh Yoshihide Hayashizaki Alkes L. Price Jayaraj Rajagopal Purushothama Rao Tata Stefan Riedel Gyöngyi Szabó Timothy L. Tickle Patrick T. Ellinor Deborah T. Hung Pardis C. Sabeti Richard Novák Robert Rogers Donald E. Ingber Z. Gordon Jiang Dejan Juric Mehrtash Babadi Samouil L. Farhi Benjamin Izar James R. Stone

10.1038/s41586-021-03570-8 article EN other-oa Nature 2021-04-29
Toni Delorey Carly G.K. Ziegler Graham Heimberg Rachelly Normand Yiming Yang and 95 more Åsa Segerstolpe Domenic Abbondanza Stephen J. Fleming Ayshwarya Subramanian Daniel T. Montoro Karthik A. Jagadeesh Kushal K. Dey Pritha Sen Michal Slyper Yered Pita-Juárez Devan Phillips Zohar Bloom-Ackerman Nick Barkas Andrea Ganna James Gomez Erica Normandin Pourya Naderi Yeganeh Yury Popov Siddharth S. Raju Sebastian Niezen Linus Tsai Katherine J. Siddle Malika Sud Victoria M. Tran Shamsudheen Karuthedath Vellarikkal Liat Amir-Zilberstein Deepak Atri Joseph Beechem Olga R. Brook Jonathan Chen Prajan Divakar Phylicia Dorceus J Engreitz Adam L. Essene Donna M. Fitzgerald Robin Fropf Steven Gazal Joshua Gould John Grzyb Tyler Harvey Jonathan L. Hecht Tyler Hether Judit Jané‐Valbuena Michael Leney-Greene Hui Ma Cristin McCabe Daniel E. McLoughlin Eric Miller Christoph Muus Mari Niemi Robert F. Padera Liuliu Pan Deepti Pant Carmel Pe’er Jenna Pfiffner-Borges Christopher J. Pinto Jacob Plaisted Jason Reeves Marty Ross Melissa A. Rudy Erroll H. Rueckert Michelle Siciliano Alexander Sturm Ellen Todres Avinash Waghray Sarah Warren Shuting Zhang Daniel R. Zollinger Lisa A. Cosimi Rajat M. Gupta Nir Hacohen Yoshihide Hayashizaki Alkes L. Price Jayaraj Rajagopal Purushothama Rao Tata Stefan Riedel Gyöngyi Szabó Timothy L. Tickle Deborah T. Hung Pardis C. Sabeti Richard Novák Robert Rogers Donald E. Ingber Z. Gordon Jiang Dejan Juric Mehrtash Babadi Samouil L. Farhi James R. Stone Ioannis S. Vlachos Isaac H. Solomon Orr Ashenberg Caroline Porter Bo Li Alex K. Shalek Alexandra‐Chloé Villani

Abstract The SARS-CoV-2 pandemic has caused over 1 million deaths globally, mostly due to acute lung injury and respiratory distress syndrome, or direct complications resulting in multiple-organ failures. Little is known about the host tissue immune cellular responses associated with COVID-19 infection, symptoms, lethality. To address this, we collected tissues from 11 organs during clinical autopsy of 17 individuals who succumbed COVID-19, a bank approximately 420 specimens. We generated...

10.1101/2021.02.25.430130 preprint EN cc-by-nd bioRxiv (Cold Spring Harbor Laboratory) 2021-02-25

Objectives: Metabolic dysfunction-associated steatotic liver disease (MASLD), an increasing public health concern, remains challenging to diagnose and risk-stratify. We assessed the 1) prevalence of MASLD risk factors among Veterans in Health Administration (VA) care, 2) associated with diagnosis; 3) associations between diagnosis receipt care. Methods: factors, including obesity, pre-diabetes, diabetes, or dyslipidemia, were identified using International Classification Diseases-10 codes...

10.14309/ajg.0000000000003312 article EN The American Journal of Gastroenterology 2025-01-07

Abstract Background The molecular underpinnings of organ dysfunction in severe COVID-19 and its potential long-term sequelae are under intense investigation. To shed light on these the context liver function, we perform single-nucleus RNA-seq spatial transcriptomic profiling livers from 17 decedents. Results We identify hepatocytes positive for SARS-CoV-2 RNA with an expression phenotype resembling infected lung epithelial cells, a central role pro-fibrotic TGFβ signaling cell–cell...

10.1186/s13059-025-03499-5 article EN cc-by Genome biology 2025-03-14

Abstract Despite being widely recognized as a common cause of fatty liver, the exact impact alcohol consumption on hepatic steatosis in general population is elusive. The recent National Health and Nutrition Examination Survey (NHANES) allowed us to examine this relationship among US adults. Herein, we extracted data detailed controlled attenuation parameter (CAP) by FibroScan from 4509 participants NHANES 2017‐2018. Compared metabolic risk factors such diabetes obesity, association between...

10.1111/liv.15020 article EN Liver International 2021-07-23

The molecular underpinnings of organ dysfunction in acute COVID-19 and its potential long-term sequelae are under intense investigation. To shed light on these the context liver function, we performed single-nucleus RNA-seq spatial transcriptomic profiling livers from 17 decedents. We identified hepatocytes positive for SARS-CoV-2 RNA with an expression phenotype resembling infected lung epithelial cells. Integrated analysis comparisons healthy controls revealed extensive changes cellular...

10.1101/2022.10.27.514070 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2022-10-28

Background Chronic disease, such as heart failure, influences cellular metabolism and shapes circulating metabolites. The relationships between key energy metabolites chronic diseases in aging are not well understood. This study aims to determine the relationship main components of with all-cause mortality incident failure. Methods Results We analyzed association plasma metabolite levels failure among US older adults CHS (Cardiovascular Health Study). followed 1758 participants without at...

10.1161/jaha.123.029960 article EN cc-by-nc-nd Journal of the American Heart Association 2023-08-23

Abstract Background and study aims Colonoscopy is an effective tool to prevent colorectal cancer. Social media has emerged as a source of medical information for patients.YouTube (a video sharing website) the most popular informative source. Therefore, we aimed assess educational quality colonoscopy videos available on YouTube. Methods We performed YouTube search using keyword “colonoscopy” yielded 429 videos, which 255 met inclusion criteria. Data Quality Score (C-DQS) was created rate (–10...

10.1055/a-1122-8566 article EN cc-by-nc-nd Endoscopy International Open 2020-04-17

Background: Infections frequently complicate hospital admission among patients with cirrhosis and are associated adverse outcomes. In specific settings, administration of prophylactic antibiotics has been shown to improve this pilot study, we aimed assess the feasibility a randomized study whether ceftriaxone (CTX), administered hospitalized advanced (Model for End-Stage Liver Disease-Sodium ≥ 18) without known infection, could reduce incidence infection. We also sought determine identify...

10.1097/hc9.0000000000000356 article EN cc-by-nc-nd Hepatology Communications 2024-01-01

Cirrhosis, a rising cause of death in the United States, has an extended preclinical phase characterized by progressive liver fibrosis. Despite developments noninvasive fibrosis measurement, there is no recommended screening, part due to incomplete understanding disease epidemiology on national scale. Herein, we aim define prevalence and compare strategies identify at‐risk population. We analyzed 4,510 US adults with complete stiffness measurement (LSM) vibration‐controlled transient...

10.1002/hep4.1837 article EN cc-by-nc-nd Hepatology Communications 2021-10-25

Introduction: The Hispanic population in the US faces a higher risk of nonalcoholic fatty liver disease (NAFLD). Multiple factors influence this risk, including genetics, environmental factors, and socioeconomic statuses. Inadequate access to nutritious foods, or food insecurity, is prevalent among individuals poses metabolic for both onset development NAFLD. Materials Methods: We utilized National Health Nutrition Examination Survey (NHANES) 2017-2020 pre-pandemic data analyze association...

10.3390/jcm13113206 article EN Journal of Clinical Medicine 2024-05-29

Abstract Background and Aims Lipoprotein Z (LP‐Z) is an abnormal free cholesterol (FC)–enriched LDL‐like particle discovered from patients with cholestatic liver disease. This study aims to define the diagnostic value of LP‐Z in alcohol‐associated hepatitis (AH) interrogate biology behind its formation. Approach Results We measured serum levels using nuclear magnetic resonance spectroscopy, a well‐established clinical assay. Serum were significantly elevated four AH cohorts compared control...

10.1002/hep.32203 article EN Hepatology 2021-10-21

Introduction: Colonoscopy is one of the most effective methods to prevent colorectal cancer. Social media has emerged as a source medical information for patients, which YouTube, video sharing website, popular informative sources. Therefore, we aimed assess educational quality colonoscopy videos available on YouTube. Methods: We performed YouTube search using keyword “colonoscopy” from 9th 18th September 2017. The initial yielded 429 out 255 were included in analysis summarized Fig 1....

10.14309/00000434-201810001-00287 article EN The American Journal of Gastroenterology 2018-10-01
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