Nikolaos P. Daskalakis

ORCID: 0000-0003-1660-9112
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About
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Research Areas
  • Stress Responses and Cortisol
  • Tryptophan and brain disorders
  • Birth, Development, and Health
  • Health, Environment, Cognitive Aging
  • Neuroendocrine regulation and behavior
  • Epigenetics and DNA Methylation
  • Posttraumatic Stress Disorder Research
  • Resilience and Mental Health
  • Anesthesia and Neurotoxicity Research
  • Genetic Associations and Epidemiology
  • Migration, Health and Trauma
  • Genetics and Neurodevelopmental Disorders
  • Traumatic Brain Injury Research
  • Hormonal Regulation and Hypertension
  • Adipose Tissue and Metabolism
  • Metabolomics and Mass Spectrometry Studies
  • Child and Adolescent Psychosocial and Emotional Development
  • Maternal Mental Health During Pregnancy and Postpartum
  • Bioinformatics and Genomic Networks
  • Memory and Neural Mechanisms
  • Childhood Cancer Survivors' Quality of Life
  • Suicide and Self-Harm Studies
  • Functional Brain Connectivity Studies
  • Single-cell and spatial transcriptomics
  • Mitochondrial Function and Pathology

McLean Hospital
2017-2025

Harvard University
2017-2025

Broad Institute
2019-2025

European Graduate School of Neuroscience
2025

Maastricht University
2025

Cohen Veterans Bioscience
2018-2024

Stanley Center for Psychiatric Research
2023-2024

Boston University
2024

National Center for PTSD
2023

Faculdade de Medicina de Jundiaí
2023

Differential effects of maternal and paternal posttraumatic stress disorder (PTSD) have been observed in adult offspring Holocaust survivors both glucocorticoid receptor sensitivity vulnerability to psychiatric disorder. The authors examined the relative influences PTSD on DNA methylation exon 1F promoter (GR-1F) gene (NR3C1) peripheral blood mononuclear cells its relationship offspring.Adult with at least one survivor parent (N=80) demographically similar participants without parental...

10.1176/appi.ajp.2014.13121571 article EN American Journal of Psychiatry 2014-05-16

Epigenetic alterations offer promise as prognostic or diagnostic markers, but it is not known whether these measures associate with, predict, clinical state. These questions were addressed in a pilot study with combat veterans PTSD to determine cytosine methylation promoter regions of the glucocorticoid related NR3C1 and FKBP51 genes would predict treatment outcome. Veterans received prolonged exposure (PE) psychotherapy, yielding responders (n=8), defined by no longer meeting criteria for...

10.3389/fpsyt.2013.00118 article EN cc-by Frontiers in Psychiatry 2013-01-01
W. Brad Ruzicka Shahin Mohammadi John F. Fullard José Dávila-Velderrain Sivan Subburaju and 95 more Daniel Reed Tso Makayla Hourihan Shan Jiang Hao-Chih Lee Jaroslav Bendl Georgios Voloudakis Vahram Haroutunian Gabriel E. Hoffman Panos Roussos Manolis Kellis Schahram Akbarian Alexej Abyzov Nadav Ahituv Dhivya Arasappan José Juan Almagro Armenteros Brian J. Beliveau Sabina Berretta Rahul Bharadwaj Arjun Bhattacharya Lucy Bicks Kristen Brennand Davide Capauto Frances A. Champagne Tanima Chatterjee Chris Chatzinakos Yuhang Chen H. Isaac Chen Yuyan Cheng Lijun Cheng Andrew Chess Jo-fan Chien Zhiyuan Chu Declan Clarke Ashley Clement Leonardo Collado‐Torres Gregory M. Cooper Gregory E. Crawford Rujia Dai Nikolaos P. Daskalakis Amy Deep–Soboslay Chengyu Deng Christopher P. DiPietro Stella Dracheva Shiron Drusinsky Ziheng Duan Duc M. Duong Cagatay Dursun Nicholas J. Eagles Jonathan I. Edelstein Prashant S. Emani Kiki Galani Timur R. Galeev Michael J. Gandal Sophia C. Gaynor Mark Gerstein Daniel H. Geschwind Kiran Girdhar Fernando S. Goes William Greenleaf Jennifer Grundman Hanmin Guo Qiuyu Guo Chirag Gupta Yoav Hadas Joachim Hallmayer Xikun Han Natalie Hawken Chuan He Ella Henry Stephanie C. Hicks Marcus Ho Li‐Lun Ho Yi‐Ling Huang Louise A. Huuki-Myers Ahyeon Hwang Thomas M. Hyde Artemis Iatrou Fumitaka Inoue Aarti Jajoo Matthew L. Jensen Lihua Jiang Peng Jin Ting Jin Connor Jops Alexandre Jourdon Riki Kawaguchi Joel E. Kleinman Steven P. Kleopoulos Alexey Kozlenkov Arnold R. Kriegstein Anshul Kundaje Soumya Kundu Che-Yu Lee Donghoon Lee Junhao Li

The complexity and heterogeneity of schizophrenia have hindered mechanistic elucidation the development more effective therapies. Here, we performed single-cell dissection schizophrenia-associated transcriptomic changes in human prefrontal cortex across 140 individuals two independent cohorts. Excitatory neurons were most affected cell group, with transcriptional converging on neurodevelopment synapse-related molecular pathways. Transcriptional alterations included known genetic risk...

10.1126/science.adg5136 article EN Science 2024-05-23
Chengyu Deng Sean Whalen Marilyn Steyert Ryan Ziffra Pawel F. Przytycki and 95 more Fumitaka Inoue Daniela A. Pereira Davide Capauto Scott Norton Flora M. Vaccarino Alex A. Pollen Tomasz J. Nowakowski Nadav Ahituv Katherine S. Pollard Schahram Akbarian Alexej Abyzov Nadav Ahituv Dhivya Arasappan José Juan Almagro Armenteros Brian J. Beliveau Jaroslav Bendl Sabina Berretta Rahul Bharadwaj Arjun Bhattacharya Lucy Bicks Kristen Brennand Davide Capauto Frances A. Champagne Tanima Chatterjee Chris Chatzinakos Yuhang Chen H. Isaac Chen Yuyan Cheng Lijun Cheng Andrew Chess Jo-fan Chien Zhiyuan Chu Declan Clarke Ashley Clement Leonardo Collado‐Torres Gregory M. Cooper Gregory E. Crawford Rujia Dai Nikolaos P. Daskalakis José Dávila-Velderrain Amy Deep–Soboslay Chengyu Deng Christopher P. DiPietro Stella Dracheva Shiron Drusinsky Ziheng Duan Duc M. Duong Cagatay Dursun Nicholas J. Eagles Jonathan I. Edelstein Prashant S. Emani John F. Fullard Kiki Galani Timur R. Galeev Michael J. Gandal Sophia C. Gaynor Mark Gerstein Daniel H. Geschwind Kiran Girdhar Fernando S. Goes William J. Greenleaf Jennifer Grundman Hanmin Guo Qiuyu Guo Chirag Gupta Yoav Hadas Joachim Hallmayer Xikun Han Vahram Haroutunian Natalie Hawken Chuan He Ella Henry Stephanie C. Hicks Marcus Ho Li‐Lun Ho Gabriel E. Hoffman Yi‐Ling Huang Louise A. Huuki-Myers Ahyeon Hwang Thomas M. Hyde Artemis Iatrou Fumitaka Inoue Aarti Jajoo Matthew L. Jensen Lihua Jiang Jin Peng Ting Jin Connor Jops Alexandre Jourdon Riki Kawaguchi Manolis Kellis Saniya Khullar Joel E. Kleinman Steven P. Kleopoulos Alexey Kozlenkov

Nucleotide changes in gene regulatory elements are important determinants of neuronal development and diseases. Using massively parallel reporter assays primary human cells from mid-gestation cortex cerebral organoids, we interrogated the cis-regulatory activity 102,767 open chromatin regions, including thousands sequences with cell type-specific accessibility variants associated brain regulation. In cells, identified 46,802 active enhancer 164 that alter activity. Activity was comparable...

10.1126/science.adh0559 article EN Science 2024-05-23
Nikolaos P. Daskalakis Artemis Iatrou Chris Chatzinakos Aarti Jajoo Clara Snijders and 95 more Dennis Wylie Christopher P. DiPietro Ioulia Tsatsani Chia‐Yen Chen Cameron D. Pernia Marina Soliva-Estruch Dhivya Arasappan Rahul Bharadwaj Leonardo Collado‐Torres Stefan Wuchty Victor E. Alvarez Eric B. Dammer Amy Deep–Soboslay Duc M. Duong Nicholas J. Eagles Bertrand R. Huber Louise A. Huuki-Myers Vincent Holstein Mark W. Logue Justina F. Lugenbühl Adam X. Maihofer Mark W. Miller Caroline M. Nievergelt Geo Pertea Deanna Ross Mohammad S.E. Sendi Benjamin B. Sun Ran Tao J. E. Tooke Erika J. Wolf Zane Zeier Sabina Berretta Frances A. Champagne Thomas M. Hyde Nicholas T. Seyfried Joo Heon Shin Daniel R. Weinberger Charles B. Nemeroff Joel E. Kleinman Kerry J. Ressler Caroline M. Nievergelt Adam X. Maihofer Elizabeth G. Atkinson Chia‐Yen Chen Karmel W. Choi Jonathan R. I. Coleman Nikolaos P. Daskalakis Laramie E. Duncan Renato Polimanti Cindy J. Aaronson Ananda B. Amstadter Søren Bo Andersen Ole A. Andreassen Paul A. Arbisi Allison E. Ashley‐Koch S. Bryn Austin Esmina Avdibegović Dragan Babić Silviu‐Alin Bacanu Dewleen G. Baker Anthony Batzler Jean C. Beckham Síntia Belangero Corina Benjet Carisa Bergner Linda M. Bierer Joanna M. Biernacka Laura J. Bierut Jonathan I. Bisson Marco P. Boks Elizabeth Bolger Amber Brandolino Gerome Breen Rodrigo A. Bressan Richard A. Bryant Angela C. Bustamante Jonas Bybjerg‐Grauholm Marie Bækvad‐Hansen Anders D. Børglum Sigrid Børte Leah Cahn Joseph R. Calabrese José Miguel Caldas‐de‐Almeida Chris Chatzinakos Sheraz Cheema Sean Clouston Lucía Colodro‐Conde Brandon J. Coombes Carlos S. Cruz-Fuentes Anders M. Dale Shareefa Dalvie Lea K. Davis Jürgen Deckert Douglas L. Delahanty Michelle F. Dennis

The molecular pathology of stress-related disorders remains elusive. Our brain multiregion, multiomic study posttraumatic stress disorder (PTSD) and major depressive (MDD) included the central nucleus amygdala, hippocampal dentate gyrus, medial prefrontal cortex (mPFC). Genes exons within mPFC carried most disease signals replicated across two independent cohorts. Pathways pointed to immune function, neuronal synaptic regulation, hormones. Multiomic factor gene network analyses provided...

10.1126/science.adh3707 article EN Science 2024-05-23
Louise A. Huuki-Myers Abby Spangler Nicholas J. Eagles Kelsey D. Montgomery Sang Ho Kwon and 95 more Boyi Guo Melissa Grant‐Peters Heena R. Divecha Madhavi Tippani Chaichontat Sriworarat Annie B. Nguyen Prashanthi Ravichandran Matthew N. Tran Arta Seyedian Thomas M. Hyde Joel E. Kleinman Alexis Battle Stephanie C. Page Mina Ryten Stephanie C. Hicks Keri Martinowich Leonardo Collado‐Torres Kristen R. Maynard Schahram Akbarian Alexej Abyzov Nadav Ahituv Dhivya Arasappan José Juan Almagro Armenteros Brian J. Beliveau Jaroslav Bendl Sabina Berretta Rahul Bharadwaj Arjun Bhattacharya Lucy Bicks Kristen Brennand Davide Capauto Frances A. Champagne Tanima Chatterjee Chris Chatzinakos Yuhang Chen H. Isaac Chen Yuyan Cheng Lijun Cheng Andrew Chess Jo-fan Chien Zhiyuan Chu Declan Clarke Ashley Clement Leonardo Collado‐Torres Gregory M. Cooper Gregory E. Crawford Rujia Dai Nikolaos P. Daskalakis José Dávila-Velderrain Amy Deep–Soboslay Chengyu Deng Christopher P. DiPietro Stella Dracheva Shiron Drusinsky Ziheng Duan Duc M. Duong Cagatay Dursun Nicholas J. Eagles Jonathan I. Edelstein Prashant S. Emani John F. Fullard Kiki Galani Timur R. Galeev Michael J. Gandal Sophia C. Gaynor Mark Gerstein Daniel H. Geschwind Kiran Girdhar Fernando S. Goes William Greenleaf Jennifer Grundman Hanmin Guo Qiuyu Guo Chirag Gupta Yoav Hadas Joachim Hallmayer Xikun Han Vahram Haroutunian Natalie Hawken Chuan He Ella Henry Stephanie C. Hicks Marcus Ho Li‐Lun Ho Gabriel E. Hoffman Yi‐Ling Huang Louise A. Huuki-Myers Ahyeon Hwang Thomas M. Hyde Artemis Iatrou Fumitaka Inoue Aarti Jajoo Matthew Jensen Lihua Jiang Peng Jin

The molecular organization of the human neocortex historically has been studied in context its histological layers. However, emerging spatial transcriptomic technologies have enabled unbiased identification transcriptionally defined domains that move beyond classic cytoarchitecture. We used Visium gene expression platform to generate a data-driven neuroanatomical atlas across anterior-posterior axis dorsolateral prefrontal cortex. Integration with paired single-nucleus RNA-sequencing data...

10.1126/science.adh1938 article EN Science 2024-05-23
Cindy Wen Michael Margolis Rujia Dai Pan Zhang Pawel F. Przytycki and 95 more Daniel Vo Arjun Bhattacharya Nana Matoba Miao Tang Chuan Jiao Minsoo Kim Ellen Tsai Celine Hoh Nil Aygün Rebecca L. Walker Christos Chatzinakos Declan Clarke Henry Pratt Mette A. Peters Mark Gerstein Nikolaos P. Daskalakis Zhiping Weng Andrew E. Jaffe Joel E. Kleinman Thomas M. Hyde Daniel R. Weinberger Nicholas J. Bray Nenad Šestan Daniel H. Geschwind Kathryn Roeder Alexander Gusev Bogdan Paşaniuc Jason L. Stein Michael I. Love Katherine S. Pollard Chunyu Liu Michael J. Gandal Schahram Akbarian Alexej Abyzov Nadav Ahituv Dhivya Arasappan José Juan Almagro Armenteros Brian J. Beliveau Jaroslav Bendl Sabina Berretta Rahul Bharadwaj Lucy Bicks Kristen Brennand Davide Capauto Frances A. Champagne Tanima Chatterjee Chris Chatzinakos Yuhang Chen H. Isaac Chen Yuyan Cheng Lijun Cheng Andrew Chess Jo-fan Chien Zhiyuan Chu Ashley Clement Leonardo Collado‐Torres Gregory M. Cooper Gregory E. Crawford José Dávila-Velderrain Amy Deep–Soboslay Chengyu Deng Christopher P. DiPietro Stella Dracheva Shiron Drusinsky Ziheng Duan Duc M. Duong Cagatay Dursun Nicholas J. Eagles Jonathan I. Edelstein Prashant S. Emani John F. Fullard Kiki Galani Timur R. Galeev Sophia C. Gaynor Kiran Girdhar Fernando S. Goes William J. Greenleaf Jennifer Grundman Hanmin Guo Qiuyu Guo Chirag Gupta Yoav Hadas Joachim Hallmayer Xikun Han Vahram Haroutunian Natalie Hawken Chuan He Ella Henry Stephanie C. Hicks Marcus Ho Li‐Lun Ho Gabriel E. Hoffman Yi‐Ling Huang Louise A. Huuki-Myers Ahyeon Hwang

Neuropsychiatric genome-wide association studies (GWASs), including those for autism spectrum disorder and schizophrenia, show strong enrichment regulatory elements in the developing brain. However, prioritizing risk genes mechanisms is challenging without a unified atlas. Across 672 diverse human brains, we identified 15,752 harboring gene, isoform, and/or splicing quantitative trait loci, mapping 3739 to cellular contexts. Gene expression heritability drops during development, likely...

10.1126/science.adh0829 article EN Science 2024-05-23

Mutations in the synaptic gene SHANK3 lead to a neurodevelopmental disorder known as Phelan-McDermid syndrome (PMS). PMS is relatively common monogenic and highly penetrant cause of autism spectrum (ASD) intellectual disability (ID), frequently presents with attention deficits. The underlying neurobiology not fully pharmacological treatments for core symptoms do exist. Here, we report production characterization Shank3-deficient rat model PMS, genetic alteration similar human mutation. We...

10.7554/elife.18904 article EN cc-by eLife 2017-01-31

In order to determine the impact of epigenetic response traumatic stress on post-traumatic disorder (PTSD), this study examined longitudinal changes genome-wide blood DNA methylation profiles in relation development PTSD symptoms two prospective military cohorts (one discovery and one replication data set). first cohort consisting male Dutch servicemen (n=93), emergence over a deployment period combat zone was significantly associated with alterations levels at 17 genomic positions 12...

10.1038/mp.2017.120 article EN cc-by-nc-sa Molecular Psychiatry 2017-06-20

Delineating the molecular basis of individual differences in stress response is critical to understanding pathophysiology and treatment posttraumatic disorder (PTSD). In this study, 7 d after predator-scent-stress (PSS) exposure, male female rats were classified into vulnerable (i.e., "PTSD-like") resilient minimally affected) phenotypes on their performance a variety behavioral measures. Genome-wide expression profiling blood two limbic brain regions (amygdala hippocampus), followed by...

10.1073/pnas.1401660111 article EN Proceedings of the National Academy of Sciences 2014-08-11
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