David A. Close

ORCID: 0009-0005-5878-5757
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About
Contact & Profiles
Research Areas
  • Fish Ecology and Management Studies
  • Aquaculture Nutrition and Growth
  • 3D Printing in Biomedical Research
  • Genetic Associations and Epidemiology
  • Cancer Cells and Metastasis
  • Physiological and biochemical adaptations
  • Reproductive biology and impacts on aquatic species
  • Wildlife Ecology and Conservation
  • Aquaculture disease management and microbiota
  • Estrogen and related hormone effects
  • Water Quality and Resources Studies
  • Trypanosoma species research and implications
  • Marine and fisheries research
  • Acute Myeloid Leukemia Research
  • Cancer Genomics and Diagnostics
  • Prostate Cancer Treatment and Research
  • Lipid metabolism and biosynthesis
  • Histone Deacetylase Inhibitors Research
  • Research on Leishmaniasis Studies
  • Genetic and phenotypic traits in livestock
  • Protein Kinase Regulation and GTPase Signaling
  • Retinal Diseases and Treatments
  • Virus-based gene therapy research
  • Liver physiology and pathology
  • Ion Channels and Receptors

University of Pittsburgh
2013-2024

AstraZeneca (United Kingdom)
2019-2022

AbbVie (United States)
2020

Fisheries and Oceans Canada
2016

University of British Columbia
2011-2016

Discovery Institute
2009-2011

Confederated Tribes of Warm Springs
2000-2010

Michigan State University
2005-2010

Michigan Department of Natural Resources
2005-2008

Oregon Department of Fish and Wildlife
2000-2003

Rubina Tabassum Joel Rämö Pietari Ripatti Jukka Koskela Mitja Kurki and 95 more Juha Karjalainen Priit Palta Shabbeer Hassan Javier Núñez-Fontarnau Tuomo Kiiskinen Sanni Söderlund Niina Matikainen Mathias J. Gerl Michał A. Surma Christian Klose Nathan O. Stitziel Hannele Laivuori Aki S. Havulinna Susan K. Service Veikko Salomaa Matti Pirinen Anu Jalanko Jaakko Kaprio Kati Donner Mari Kaunisto Nina Mars Alexander Dada Anastasia Shcherban Andrea Ganna Arto Lehistö Elina Kilpeläinen Georg Brein Awaisa Ghazal Jarmo Harju Kalle Pärn Pietro Della Briotta Parolo Risto Kajanne Susanna Lemmelä Timo P. Sipilä Tuomas Sipilä Ulrike Lyhs Vincent Llorens Teemu Niiranen Kati Kristiansson Lotta Männikkö Manuel González Jiménez Markus Perola Regis Wong Terhi Kilpi Tero Hiekkalinna Elina Järvensivu Essi Kaiharju Hannele Mattsson Markku Laukkanen Päivi Laiho Sini Lähteenmäki Tuuli Sistonen Sirpa Soini Adam Ziemann Anne Lehtonen Apinya Lertratanakul Bob Georgantas Bridget Riley‐Gillis Danjuma Quarless Fedik Rahimov Graham Heap Howard J. Jacob Jeffrey F. Waring J. Wade Davis Nizar Smaoui Relja Popovic Sahar Esmaeeli Jeff Waring Athena Matakidou Ben Challis David A. Close Slavé Petrovski Antti Karlsson Johanna Schleutker Kari Pulkki Petri Virolainen Lila Kallio Graham J. Mann Sami Heikkinen Veli‐Matti Kosma Chia‐Yen Chen Heiko Runz Jiang Liu Paola G. Bronson Sally John Sanni Lahdenperä Susan Eaton Wei Zhou Minna Hendolin Outi Tuovila Raimo Pakkanen Joseph Maranville Keith Usiskin Marla Hochfeld Robert Plenge

Abstract Understanding genetic architecture of plasma lipidome could provide better insights into lipid metabolism and its link to cardiovascular diseases (CVDs). Here, we perform genome-wide association analyses 141 species (n = 2,181 individuals), followed by phenome-wide scans with 25 CVD related phenotypes 511,700 individuals). We identify 35 lipid-species-associated loci (P <5 ×10 −8 ), 10 which associate risk including five new loci- COL5A1 , GLTPD2 SPTLC3 MBOAT7 GALNT16 (false...

10.1038/s41467-019-11954-8 article EN cc-by Nature Communications 2019-09-24
Seyedeh M. Zekavat Shu‐Hong Lin Alexander G. Bick Aoxing Liu Kaavya Paruchuri and 95 more Chen Wang Md Mesbah Uddin Yixuan Ye Zhaolong Yu Xiaoxi Liu Yoichiro Kamatani Romit Bhattacharya James P. Pirruccello Akhil Pampana Po−Ru Loh Puja Kohli Steven A. McCarroll Krzysztof Kiryluk Benjamin M. Neale Iuliana Ionita‐Laza Eric A. Engels Derek W. Brown Jordan W. Smoller Robert C. Green Elizabeth W. Karlson Matthew S. Lebo Patrick T. Ellinor Scott T. Weiss Mark J. Daly Satoshi Koyama Kaoru Ito Yukihide Momozawa Koichi Matsuda Yuji Yamanashi Yoichi Furukawa Takayuki Morisaki Yoshinori Murakami Kaori Muto Akiko Nagai Wataru Obara Ken Yamaji Kazuhisa Takahashi Satoshi Asai Yasuo Takahashi Takao Suzuki Nobuaki Sinozaki Hiroki Yamaguchi Shiro Minami Shigeo Murayama Kozo Yoshimori Satoshi Nagayama Daisuke Obata Masahiko Higashiyama Akihide Masumoto Yukihiro Koretsune Aarno Palotie Adam Ziemann Adele A. Mitchell Adriana Huertas‐Vázquez Aino Salminen Airi Jussila Aki S. Havulinna Alex Mackay Ali Abbasi Amanda Elliott Amy L. Cole Anastasia Shcherban Anders Mälarstig Andrea Ganna Andrey Loboda Anna Podgornaia Anne Lehtonen Anne Pitkäranta Anne M. Remes Annika Auranen Antti Hakanen Antti Palomäki Anu Jalanko Anu Loukola Aparna Chhibber Apinya Lertratanakul Arto Lehistö Graham J. Mann Åsa K. Hedman Audrey Y. Chu Aviv Madar Awaisa Ghazal Benjamin Challis Benjamin B. Sun Beryl B. Cummings Bridget Riley‐Gillis Caroline S. Fox Chia‐Yen Chen Clarence Wang Clément Chatelain Daniel Gordin Danjuma Quarless Danny Oh David F. Choy David A. Close

10.1038/s41591-021-01371-0 article EN Nature Medicine 2021-06-01

The cultural and ecological values of Pacific lamprey (Lampetra tridentata) have not been understood by Euro-Americans thus their great decline has almost gone unnoticed except Native Americans, who elevated the issue initiated research to restore its populations, at least in Columbia Basin. They regard as a highly valued resource result ksuyas (lamprey) become one icons. Ksuyas are harvested this day subsistence food various tribes along coast regarded for value. Interestingly, our review...

10.1577/1548-8446(2002)027<0019:teacio>2.0.co;2 article EN Fisheries 2002-07-01

Abstract Unlike most anadromous fishes that have evolved strict homing behaviour, P acific lamprey ( E ntosphenus tridentatus ) seem to lack philopatry as evidenced by minimal population structure across the species range. Yet unexplained findings of within‐region genetic heterogeneity coupled with morphological and behavioural diversity described for suggest adaptive variation underlying fitness traits may be responsible. We employed restriction site–associated DNA sequencing genotype 4439...

10.1111/mec.12150 article EN Molecular Ecology 2012-12-03
Nina Mars Elisabeth Widén Sini Kerminen Tuomo J Meretoja Matti Pirinen and 95 more Pietro Della Briotta Parolo Priit Palta Aki Havulinna Amanda Elliott Anastasia Shcherban Andrea Ganna Anu Jalanko Arto Lehisto Elina Kilpeläinen Georg Brein Awaisa Ghazal Hannele Laivuori Henrike Heyne Jarmo Harju Jiwoo Lee Juha Karjalainen Jukka Koskela Kalle Pärn Kati Donner Kristin Tsuo Manuel González Jiménez Mari Kaunisto Mari Niemi Mary Pat Reeve Mervi Aavikko Mitja Kurki Oluwaseun Alexander Dada Pietro Della Briotta Parolo Risto Kajanne Sina Rüeger Susanna Lemmelä Taru Tukiainen Jaakko Tuomilehto Timo P. Sipilä Tuomo Kiiskinen Vincent Llorens Adam Ziemann Anne Lehtonen Apinya Lertratanakul Bob Georgantas Bridget Riley‐Gillis Danjuma Quarless Fedik Rahimov Howard Jacob Jeffrey F. Waring J. Wade Davis Nizar Smaoui Relja Popovic Sahar Esmaeeli Athena Matakidou Ben Challis David A. Close Eleonor Wigmore Slavé Petrovski Chia‐Yen Chen Ellen Tsai Heiko Runz Jimmy Z. Liu Paola G. Bronson Sally John Sanni Lahdenperä Stephanie Loomis Susan Eaton Yunfeng Huang Erika Kvikstad Minal Çalışkan Samir Wadhawan Elmutaz Shaikho Elhaj Mohammed Janet van Adelsberg Joseph Maranville Marla Hochfeld Robert Plenge Shameek Biswas Steven M. Greenberg Andrew S. Peterson David F. Choy Diana Chang Edmond Teng Erich C. Strauss Geoff Kerchner Hao Chen Hubert Chen Jennifer L. Schutzman John A. Michon Julie Hunkapiller Mark I. McCarthy Natalie Bowers Sarah A. Pendergrass Tushar Bhangale David Pulford Dawn Waterworth Diptee Kulkarni Fanli Xu Jo Betts Jorge Esparza Gordillo

Abstract Polygenic risk scores (PRS) for breast cancer have potential to improve prediction, but there is limited information on their utility in various clinical situations. Here we show that among 122,978 women the FinnGen study with 8401 cases, PRS modifies of two high-impact frameshift variants. Similarly, after diagnosis, individuals elevated an developing contralateral cancer, and can considerably assessment female first-degree relatives. In more detail, c.1592delT variant PALB2...

10.1038/s41467-020-19966-5 article EN cc-by Nature Communications 2020-12-14

Corticosteroid hormones are critical for controlling metabolism, hydromineral balance, and the stress response in vertebrates. Although corticosteroid have been well characterized most vertebrate groups, identity of earliest hormone has remained elusive. Here we provide evidence that 11-deoxycortisol is lamprey, a member agnathans evolved more than 500 million years ago. We used RIA, HPLC, mass spectrometry analysis to determine active present lamprey plasma. also an receptor extracted from...

10.1073/pnas.0914026107 article EN Proceedings of the National Academy of Sciences 2010-07-19

Despite significant investments in cancer research and drug discovery/development, the rate of new approval is ≤5% most cases metastatic remain incurable. Ninety-five percent drugs fail clinical development because a lack therapeutic efficacy and/or unacceptable toxicity. One major factors responsible for low success anticancer failure preclinical models to adequately recapitulate complexity heterogeneity human cancer. For throughput capacity reasons, high-throughput screening growth...

10.1089/adt.2015.662 article EN Assay and Drug Development Technologies 2015-08-14

Summary 1. Spatial patterns in channel morphology and substratum composition at small (1–10 metres) large scales kilometres) were analysed to determine the influence of habitat heterogeneity on distribution abundance larval lamprey. 2. We used a nested sampling design multiple logistic regression evaluate spatial Pacific lamprey, Lampetra tridentata , 30 sites (each composed twelve 1‐m 2 quadrat samples) distributed throughout 55‐km section Middle Fork John Day River, OR, U.SA. Statistical...

10.1111/j.1365-2427.2004.01215.x article EN Freshwater Biology 2004-04-16

Patients with clinical manifestations of leishmaniasis, including cutaneous have limited treatment options, and existing therapies frequently significant untoward liabilities. Rapid expansion in the diversity available leishmanicidal chemotypes is initial step finding alternative efficacious treatments. To this end, we combined a low-stringency Leishmania major promastigote growth inhibition assay structural computational filtering algorithm. After rigorous validation process, interrogated...

10.1371/journal.pntd.0000540 article EN cc-by PLoS neglected tropical diseases 2009-11-02

Cutaneous leishmaniasis remains ignored in therapeutic drug discovery programs worldwide. This is mainly because cutaneous frequently a disease of impoverished populations countries where funds are limited for research and patient care. However, the health burden individuals endemic areas mandates readily available, effective, safe treatments. Of existing therapeutics, many growth inhibitory to Leishmania parasites, potentially creating dormant parasite reservoirs that can be activated when...

10.1021/cb400800q article EN ACS Chemical Biology 2013-12-12

Glucocorticoids (GCs) are produced by the adrenal glands and circulate in blood to coordinate organismal physiology. In addition, different tissues may independently regulate their local GC levels via synthesis. Here, we find that mouse, endogenous GCs show tissue-specific developmental patterns, rather than mirroring blood. Using solid-phase extraction, HPLC, specific immunoassays, quantified steroids found of female male mice, (1) can be much higher systemic levels, (2) follow age-related...

10.1210/en.2013-1606 article EN Endocrinology 2014-11-18

Studies have demonstrated ways in which climate-related shifts the distributions and relative abundances of marine species are expected to alter dynamics catch potential global fisheries. While these studies assess impacts on large-scale commercial fisheries, few efforts been made quantitatively project small-scale subsistence fisheries that economically, socially culturally important many coastal communities. This study uses a dynamic bioclimate envelope model scenarios changes abundance,...

10.1371/journal.pone.0145285 article EN cc-by PLoS ONE 2016-01-13

In solid tumors like head and neck cancer (HNC), chronic acute hypoxia have serious adverse clinical consequences including poorer overall patient prognosis, enhanced metastasis, increased genomic instability, resistance to radiation-, chemo-, or immuno-therapies. However, cells in the two-dimensional monolayer cultures typically used for drug discovery experience 20%-21% O2 levels (normoxic) which are 4-fold higher than normal tissues ≥10-fold hypoxic regions of tumors. The oxygen...

10.1016/j.slasd.2021.10.008 article EN cc-by-nc-nd SLAS DISCOVERY 2022-01-01

Background The parasitic protozoan Trypanosoma brucei utilizes glycolysis exclusively for ATP production during infection of the mammalian host. first step in this metabolic pathway is mediated by hexokinase (TbHK), an enzyme essential to parasite that transfers γ-phospho a hexose. Here we describe identification and confirmation novel small molecule inhibitors bacterially expressed TbHK1, one two TbHKs T. brucei, using high throughput screening assay. Methodology/Principal Findings...

10.1371/journal.pntd.0000659 article EN cc-by PLoS neglected tropical diseases 2010-04-13

Pacific lamprey, Lampetra tridentata , has declined precipitously throughout their range in the Columbia River basin of North America. Tribal Nations and Federal State agencies are engaged efforts to restore these fish. Understanding whether lamprey emit detect migratory pheromones is particularly important for restoration efforts. Using behavioural assays, we demonstrated that adult attracted odors emanating from larval conspecifics. We then identified putative released by lamprey. Chemical...

10.1139/f2011-140 article EN Canadian Journal of Fisheries and Aquatic Sciences 2011-12-01

Multicellular tumor spheroid (MCTS) cultures represent more physiologically relevant in vitro cell models that recapitulate the microenvironments and cell–cell or cell–extracellular matrix interactions which occur solid tumors. We characterized morphologies, viability, growth behaviors of MCTSs produced by 11 different head neck squamous carcinoma (HNSCC) lines seeded into cultured ultra-low attachment microtiter plates (ULA-plates) over extended periods time. HNSCC MCTS developed...

10.1089/adt.2018.896 article EN Assay and Drug Development Technologies 2018-12-28

<h3>Importance</h3> Randomized clinical trials demonstrate no benefit for epidermal growth factor receptor (EGFR) tyrosine kinase inhibitors in unselected patients with head and neck squamous cell carcinoma (HNSCC). However, a patient stage IVA HNSCC received 13 days of neoadjuvant erlotinib experienced near-complete histologic response. <h3>Objective</h3> To determine mechanism exceptional response to therapy HNSCC. <h3>Design, Setting, Participants</h3> Single locally advanced who...

10.1001/jamaoncol.2015.34 article EN JAMA Oncology 2015-03-05

Abstract Background and Purpose We extend the characterization of TRPM8 antagonist VBJ103 with tests selectivity, specificity distribution, therapeutic efficacy systemic administration against oxaliplatin‐induced cold hyperalgesia impact on core body temperature (CBT). Experimental Approach Selectivity at human TRPA1 TRPV1 as well in vitro safety profiling was determined. Effects were evaluated a model hyperalgesia. Both peripheral centrally mediated effects CBT assessed radiotelemetry. Key...

10.1111/bph.16429 article EN cc-by British Journal of Pharmacology 2024-05-24

High cancer drug development attrition rates have provoked considerable debate about whether the two-dimensional tumor growth inhibition high-throughput screening assays used in pre-clinical lead discovery adequately reflect solid complexity. We automated high-content image acquisition and analysis methods to compare fluorescent uptake, accumulation, distribution Cal33 FaDu head neck (HNC) monolayer multicellular spheroid (MCTS) models. Ellipticine, idarubicin, daunorubicin, doxorubicin were...

10.1089/adt.2017.812 article EN Assay and Drug Development Technologies 2017-12-07

Acute kidney injury (AKI), a sudden loss of function, is common and serious condition for which there are no approved specific therapies. While multiple approaches to treat the underlying causes AKI, targets have been clinically validated. Here, we assessed series potent, selective competitive inhibitors histone deacetylase 8 (HDAC8), promising therapeutic target in an AKI setting. Using biochemical assays, zebrafish phenotypic human organoid show that HDAC8 can lead efficacy increasingly...

10.1021/acsptsci.1c00243 article EN ACS Pharmacology & Translational Science 2022-03-16
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