Deena R. Altman

ORCID: 0000-0003-1948-3834
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About
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Research Areas
  • Antimicrobial Resistance in Staphylococcus
  • COVID-19 Clinical Research Studies
  • Bacterial Identification and Susceptibility Testing
  • SARS-CoV-2 and COVID-19 Research
  • Sepsis Diagnosis and Treatment
  • Bacterial biofilms and quorum sensing
  • Mycobacterium research and diagnosis
  • Streptococcal Infections and Treatments
  • Long-Term Effects of COVID-19
  • Clostridium difficile and Clostridium perfringens research
  • COVID-19 and healthcare impacts
  • Poxvirus research and outbreaks
  • Bacillus and Francisella bacterial research
  • Intensive Care Unit Cognitive Disorders
  • Antibiotic Resistance in Bacteria
  • Nosocomial Infections in ICU
  • Monoclonal and Polyclonal Antibodies Research
  • Cystic Fibrosis Research Advances
  • Herpesvirus Infections and Treatments
  • Infective Endocarditis Diagnosis and Management
  • Biochemical and Structural Characterization
  • Hyperglycemia and glycemic control in critically ill and hospitalized patients
  • Bacteriophages and microbial interactions
  • COVID-19 epidemiological studies
  • Gut microbiota and health

Icahn School of Medicine at Mount Sinai
2016-2025

Benaroya Research Institute
2022

Mount Sinai Hospital
2020-2021

Office of Infectious Diseases
2010

SARS-CoV-2 antibodies persist As the number of daily COVID-19 cases continues to mount worldwide, nature humoral immune response severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) remains uncertain. Wajnberg et al. used a cohort more than 30,000 infected individuals with mild moderate symptoms determine robustness and longevity anti–SARS-CoV-2 antibody response. They found that neutralizing titers against spike protein persisted for at least 5 months after infection. Although...

10.1126/science.abd7728 article EN cc-by Science 2020-10-28
Shruti Gupta Salim S. Hayek Wei Wang Lili Chan Kusum S. Mathews and 95 more Michal L. Melamed Samantha K. Brenner Amanda K. Leonberg‐Yoo Edward J. Schenck Jared Radbel Jochen Reiser Anip Bansal Anand Srivastava Yan Zhou Anne Sutherland Adam Green Alexandre M. Shehata Nitender Goyal Anitha Vijayan Juan Carlos Q. Velez Shahzad Shaefi Chirag R. Parikh Justin Arunthamakun Ambarish M. Athavale Allon N. Friedman Samuel Short Zoé A. Kibbelaar Samah Abu Omar Andrew J. Admon John P. Donnelly Hayley B. Gershengorn Miguel A. Hernán Matthew W. Semler David E. Leaf Carl P. Walther Samaya J. Anumudu Kathleen F. Kopecky Gregory P. Milligan Peter A. McCullough Thuy-Duyen Nguyen Megan L. Krajewski Sidharth Shankar Ameeka Pannu Juan D. Valencia Sushrut S. Waikar Peter C. Hart Oyintayo Ajiboye Matthew Itteera Jean-Sébastien Rachoin Christa Schorr Lisa Shea Daniel Edmonston Christopher L. Mosher Aaron Karp Zaza Cohen Valerie Allusson Gabriela Bambrick‐Santoyo Noor ul aain Bhatti Bijal Mehta Aquino Williams Patricia Walters Rolando C Go Keith M. Rose Amy M. Zhou Ethan C. Kim Rebecca Lisk Steven G. Coca Deena R. Altman Aparna Saha Howard Soh Huei Hsun Wen Sonali Bose Emily Leven Jing G. Wang Gohar Mosoyan Girish N. Nadkarni John Guirguis Rajat Kapoor Christopher Meshberger Brian T. Garibaldi Celia P. Corona-Villalobos Yumeng Wen Steven Menez Rubab F. Malik Carmen Elena Cervantes Samir C. Gautam Hang Nguyen Afshin Ahoubim Leslie F. Thomas Dheeraj Reddy Sirganagari Pramod Guru Paul A. Bergl Jesús Rodríguez Jatan A. Shah Mrigank S. Gupta Princy Kumar Deepa G. Lazarous Seble Kassaye Tanya S. Johns Ryan Mocerino

<h3>Importance</h3> The US is currently an epicenter of the coronavirus disease 2019 (COVID-19) pandemic, yet few national data are available on patient characteristics, treatment, and outcomes critical illness from COVID-19. <h3>Objectives</h3> To assess factors associated with death to examine interhospital variation in treatment for patients <h3>Design, Setting, Participants</h3> This multicenter cohort study assessed 2215 adults laboratory-confirmed COVID-19 who were admitted intensive...

10.1001/jamainternmed.2020.3596 article EN JAMA Internal Medicine 2020-07-15
Shruti Gupta Wei Wang Salim S. Hayek Lili Chan Kusum S. Mathews and 95 more Michal L. Melamed Samantha K. Brenner Amanda K. Leonberg‐Yoo Edward J. Schenck Jared Radbel Jochen Reiser Anip Bansal Anand Srivastava Yan Zhou Diana G. Finkel Adam Green Mary C. Mallappallil Anthony J. Faugno Jingjing Zhang Juan Carlos Q. Velez Shahzad Shaefi Chirag R. Parikh David M. Charytan Ambarish M. Athavale Allon N. Friedman Roberta E. Redfern Samuel Short Simon Correa Kapil K. Pokharel Andrew J. Admon John P. Donnelly Hayley B. Gershengorn David J. Douin Matthew W. Semler Miguel A. Hernán David E. Leaf Carl P. Walther Samaya J. Anumudu Justin Arunthamakun Kathleen F. Kopecky Gregory P. Milligan Peter A. McCullough Thuy-Duyen Nguyen Shahzad Shaefi Megan L. Krajewski Sidharth Shankar Ameeka Pannu Juan D. Valencia Sushrut S. Waikar Zoé A. Kibbelaar Ambarish M. Athavale Peter C. Hart Shristi Upadhyay Ishaan Vohra Oyintayo Ajiboye Adam Green Jean-Sébastien Rachoin Christa Schorr Lisa Shea Daniel Edmonston Christopher L. Mosher Alexandre M. Shehata Zaza Cohen Valerie Allusson Gabriela Bambrick‐Santoyo Noor ul aain Bhatti Bijal Mehta Aquino Williams Samantha K. Brenner Patricia Walters Ronaldo C. Go Keith M. Rose Miguel A. Hernán Rebecca Lisk Amy M. Zhou Ethan C. Kim Lili Chan Kusum S. Mathews Steven G. Coca Deena R. Altman Aparna Saha Howard Soh Huei Hsun Wen Sonali Bose Emily Leven Jing G. Wang Gohar Mosoyan Girish N. Nadkarni Pattharawin Pattharanitima Emily J. Gallagher Allon N. Friedman John Guirguis Rajat Kapoor Christopher Meshberger Katherine J. Kelly Chirag R. Parikh Brian T. Garibaldi Celia P. Corona‐Villalobos Yumeng Wen Steven Menez

Therapies that improve survival in critically ill patients with coronavirus disease 2019 (COVID-19) are needed. Tocilizumab, a monoclonal antibody against the interleukin 6 receptor, may counteract inflammatory cytokine release syndrome severe COVID-19 illness.

10.1001/jamainternmed.2020.6252 article EN JAMA Internal Medicine 2020-10-20

Coronavirus disease 2019 (COVID-19), caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), is a new human with few effective treatments1. Convalescent plasma, donated persons who have recovered from COVID-19, the acellular component of blood that contains antibodies, including those specifically recognize SARS-CoV-2. These when transfused into patients infected SARS-CoV-2, are thought to exert an antiviral effect, suppressing virus replication before mounted their own...

10.1038/s41591-020-1088-9 article EN other-oa Nature Medicine 2020-09-15

Blighted Gotham Deaths caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in New York City (NYC) during the spring of 2020 have vastly exceeded those reported China and many other countries. What were early events that led to such a outbreak? Gonzalez-Reiche et al. sampled some patients seeking assistance February March at Mount Sinai Health System. Phylogenetic analysis virus sequences these people, who drawn from across NYC, showed had been independently introduced...

10.1126/science.abc1917 article EN cc-by Science 2020-05-29
Jennifer E. Flythe Magdalene M. Assimon Matthew J. Tugman Emily Chang Shruti Gupta and 95 more Jatan A. Shah Marie Anne Sosa Amanda D. Renaghan Michal L. Melamed F. Perry Wilson Javier A. Neyra Arash Rashidi Suzanne M. Boyle Shuchi Anand Marta Christov Leslie F. Thomas Daniel Edmonston David E. Leaf Carl P. Walther Samaya J. Anumudu Justin Arunthamakun Kathleen F. Kopecky Gregory P. Milligan Peter A. McCullough Thuy-Duyen Nguyen Shahzad Shaefi Megan L. Krajewski Sidharth Shankar Ameeka Pannu Juan D. Valencia Sushrut S. Waikar Zoé A. Kibbelaar Ambarish M. Athavale Peter Hart Shristi Upadhyay Ishaan Vohra Adam Green Jean-Sébastien Rachoin Christa Schorr Lisa Shea Daniel Edmonston Christopher L. Mosher Alexandre M. Shehata Zaza Cohen Valerie Allusson Gabriela Bambrick‐Santoyo Noor ul aain Bhatti Bijal Mehta Aquino Williams Samantha K. Brenner Patricia Walters Ronaldo C. Go Keith M. Rose Lili Chan Kusum S. Mathews Steven G. Coca Deena R. Altman Aparna Saha Howard Soh Huei Hsun Wen Sonali Bose Emily Leven Jing G. Wang Gohar Mosoyan Girish N. Nadkarni Pattharawin Pattharanitima Emily J. Gallagher Allon N. Friedman John Guirguis Rajat Kapoor Christopher Meshberger Katherine J. Kelly Chirag R. Parikh Brian T. Garibaldi Celia P. Corona‐Villalobos Yumeng Wen Steven Menez Rubab F. Malik Carmen Elena Cervantes Samir C. Gautam Mary C. Mallappallil Jie Ouyang Sabu John Ernie Yap Yohannes Adama Melaku Ibrahim Mohamed Siddhartha Bajracharya Isha Puri Mariah Thaxton Jyotsna Bhattacharya John E. Wagner Leon Boudourakis H. Bryant Nguyen Afshin Ahoubim Kianoush Kashani Shahrzad Tehranian Leslie F. Thomas Dheeraj Reddy Sirganagari Pramod Guru Yan Zhou

10.1053/j.ajkd.2020.09.003 article EN other-oa American Journal of Kidney Diseases 2020-09-19
Hanny Al‐Samkari Shruti Gupta Rebecca Karp Leaf Wei Wang Rachel Rosovsky and 95 more Samantha K. Brenner Salim S. Hayek Hanna Berlin Rajat Kapoor Shahzad Shaefi Michal L. Melamed Anne Sutherland Jared Radbel Adam Green Brian T. Garibaldi Anand Srivastava Amanda K. Leonberg‐Yoo Alexandre M. Shehata Jennifer E. Flythe Arash Rashidi Nitender Goyal Lili Chan Kusum S. Mathews S. Susan Hedayati Rajany Dy Stephanie M. Toth‐Manikowski Jingjing Zhang Mary C. Mallappallil Roberta E. Redfern Amar D. Bansal Samuel Short Márk Vangel Andrew J. Admon Matthew W. Semler Kenneth A. Bauer Miguel A. Hernán David E. Leaf Carl P. Walther Samaya J. Anumudu Justin Arunthamakun Kathleen F. Kopecky Gregory P. Milligan Peter A. McCullough Thuy-Duyen Nguyen Shahzad Shaefi Megan L. Krajewski Sidharth Shankar Ameeka Pannu Juan D. Valencia Kenneth A. Bauer Sushrut S. Waikar Zoé A. Kibbelaar Ambarish M. Athavale Peter C. Hart Shristi Upadhyay Ishaan Vohra Oyintayo Ajiboye Adam Green Jean-Sébastien Rachoin Christa Schorr Lisa Shea Daniel Edmonston Christopher L. Mosher Alexandre M. Shehata Zaza Cohen Valerie Allusson Gabriela Bambrick‐Santoyo Noor ul aain Bhatti Bijal Mehta Aquino Williams Samantha K. Brenner Patricia Walters Ronaldo C. Go Keith M. Rose Miguel A. Hernán Amy M. Zhou Ethan C. Kim Rebecca Lisk Lili Chan Kusum S. Mathews Steven G. Coca Deena R. Altman Aparna Saha Howard Soh Huei Hsun Wen Sonali Bose Emily Leven Jing G. Wang Gohar Mosoyan Pattharawin Pattharanitima Emily J. Gallagher Allon N. Friedman John Guirguis Rajat Kapoor Christopher Meshberger Katherine Kelly Chirag R. Parikh Brian T. Garibaldi Celia P. Corona‐Villalobos Yumeng Wen

Hypercoagulability may be a key mechanism of death in patients with coronavirus disease 2019 (COVID-19).

10.7326/m20-6739 article EN Annals of Internal Medicine 2021-01-25

Abstract SARS-CoV-2 has caused a global pandemic with millions infected and numerous fatalities. Questions regarding the robustness, functionality longevity of antibody response to virus remain unanswered. Here we report that vast majority individuals mild-to-moderate COVID-19 experience robust IgG responses against viral spike protein, based on dataset 19,860 screened at Mount Sinai Health System in New York City. We also show titers are stable for least period approximating three months,...

10.1101/2020.07.14.20151126 preprint EN medRxiv (Cold Spring Harbor Laboratory) 2020-07-17

Background Since December 2019, Coronavirus Disease 2019 (COVID-19) has become a global pandemic, causing mass morbidity and mortality. Prior studies in other respiratory infections suggest that convalescent plasma transfusion may offer benefit to some patients. Here, the outcomes of thirty-nine hospitalized patients with severe life-threatening COVID-19 who received were compared against cohort retrospectively matched controls. Methods Plasma recipients selected based on supplemental oxygen...

10.1101/2020.05.20.20102236 preprint EN cc-by-nc-nd medRxiv (Cold Spring Harbor Laboratory) 2020-05-22

Clinical Implications•We describe 3 patients with X-linked agammaglobulinemia coronavirus disease 2019 who failed supportive treatment but recovered after receiving convalescent plasma. •We The (COVID-19) pandemic has presented a global challenge. pathogenesis of severe acute respiratory syndrome 2 (SARS-CoV-2) infection is complex, and effective therapy currently lacking. Convalescent plasma transfusion safe under investigation for effectiveness.1Bloch E.M. Shoham S. Casadevall A. Sachais...

10.1016/j.jaip.2020.08.059 article EN other-oa The Journal of Allergy and Clinical Immunology In Practice 2020-09-15

Previous viral pandemics have shown that secondary bacterial infections result in higher morbidity and mortality, with Staphylococcus aureus being the primary causative pathogen. The impact of S. bacteremia on mortality patients infected severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) remains unknown.This was a retrospective observational case series disease 2019 (COVID-19) who developed across New York City hospitals. end point to describe 14-day 30-day hospital rates COVID-19...

10.1093/ofid/ofaa518 article EN cc-by-nc-nd Open Forum Infectious Diseases 2020-11-01

The epidemic community-associated methicillin-resistant Staphylococcus aureus (CA-MRSA) USA300 lineage has recently become a leading cause of hospital-associated bloodstream infections (BSIs). Here, we leveraged this recent introduction into hospitals and the limited genetic variation across isolates to identify mutations that contribute its success in new environment. We found BSI exhibit altered virulence regulation. Using comparative genomics delineate genes involved phenotype, discovered...

10.1016/j.chom.2022.12.003 article EN cc-by-nc-nd Cell Host & Microbe 2023-01-20

Staphylococcus aureus organisms vary in the function of staphylococcal virulence regulator gene agr. To test for a relationship between agr and transmission S. aureus, we determined prevalence genetic basis dysfunction among nosocomial methicillin-resistant (MRSA) an area MRSA endemicity. Identical inactivating mutations were not detected epidemiologically unlinked clones within or hospitals. Additionally, most mutants had single mutations, indicating that they short lived. Collectively,...

10.1086/656915 article EN The Journal of Infectious Diseases 2010-10-13

ABSTRACT New York City (NYC) has emerged as one of the epicenters current SARS-CoV2 pandemic. To identify early events underlying rapid spread virus in NYC metropolitan area, we sequenced causing COVID19 patients seeking care at Mount Sinai Health System. Phylogenetic analysis 84 distinct genomes indicates multiple, independent but isolated introductions mainly from Europe and other parts United States. Moreover, find evidence for community transmission suggested by clusters related viruses...

10.1101/2020.04.08.20056929 preprint EN cc-by-nc-nd medRxiv (Cold Spring Harbor Laboratory) 2020-04-11
Matthew M. Churpek Shruti Gupta A. Spicer William F. Parker John Fahrenbach and 95 more Samantha K. Brenner David E. Leaf Carl P. Walther Samaya J. Anumudu Justin Arunthamakun Kathleen F. Kopecky Gregory P. Milligan Peter A. McCullough Thuy-Duyen Nguyen Shahzad Shaefi Megan L. Krajewski Sidharth Shankar Ameeka Pannu Juan D. Valencia Sushrut S. Waikar Zoé A. Kibbelaar Ambarish M. Athavale Peter Hart Shristi Upadhyay Ishaan Vohra Adam Green Jean-Sébastien Rachoin Christa Schorr Lisa Shea Daniel Edmonston Christopher L. Mosher Alexandre M. Shehata Zaza Cohen Valerie Allusson Gabriela Bambrick‐Santoyo Noor ul aain Bhatti Bijal Mehta Aquino Williams Samantha K. Brenner Patricia Walters Ronaldo C. Go Keith M. Rose Miguel A. Hernán Lili Chan Kusum S. Mathews Steven G. Coca Deena R. Altman Aparna Saha Howard Soh Huei Hsun Wen Sonali Bose Emily Leven Jing G. Wang Gohar Mosoyan Girish N. Nadkarni Pattharawin Pattharanitima Emily J. Gallagher Allon N. Friedman John Guirguis Rajat Kapoor Christopher Meshberger Katherine Kelly Chirag R. Parikh Brian T. Garibaldi Celia P. Corona‐Villalobos Yumeng Wen Steven Menez Rubab F. Malik Elena Cervantes Samir C. Gautam Mary C. Mallappallil Jie Ouyang Sabu John Ernie Yap Yohannes Adama Melaku Ibrahim Mohamed Siddartha Bajracharya Isha Puri Mariah Thaxton Jyotsna Bhattacharya John E. Wagner Leon Boudourakis H. Bryant Nguyen Afshin Ahoubim Leslie F. Thomas Dheeraj Reddy Sirganagari Pramod Guru Kianoush Kashani Shahrzad Tehranian Yan Zhou Paul A. Bergl Jesús Rodríguez Jatan A. Shah Mrigank S. Gupta Princy Kumar Deepa G. Lazarous Seble Kassaye Michal L. Melamed Tanya S. Johns Ryan Mocerino

Rationale: Variation in hospital mortality has been described for coronavirus disease (COVID-19), but the factors that explain these differences remain unclear. Objective: Our objective was to use a large, nationally representative data set of critically ill adults with COVID-19 determine which variability. Methods: In this multicenter cohort study, we examined hospitalized ICUs at 70 U.S. hospitals between March and June 2020. The primary outcome 28-day mortality. We patient-level...

10.1164/rccm.202012-4547oc article EN cc-by-nc-nd American Journal of Respiratory and Critical Care Medicine 2021-04-23

The current study identified bacterial factors that may improve management of methicillin-resistant Staphylococcus aureus (MRSA) nosocomial pneumonia. Isolates were obtained from 386 patients enrolled in a randomized, controlled antibiotic efficacy. screened for production virulence and vancomycin susceptibility. After adjustment host such as severity illness treatment modality, cytotoxic activity was strongly inversely associated with mortality; however, it had no effect on clinical cure....

10.1093/infdis/jiu554 article EN The Journal of Infectious Diseases 2014-10-07

Therapy for bacteremia caused by Staphylococcus aureus is often ineffective, even when treatment conditions are optimal according to experimental protocols. Adapted subclones, such as those bearing mutations that attenuate agr -mediated virulence activation, associated with persistent infection and patient mortality.

10.1128/iai.00331-18 article EN cc-by Infection and Immunity 2018-07-25
Caroline M. Hsu Shruti Gupta Hocine Tighiouart Nitender Goyal Anthony J. Faugno and 95 more Asma Tariq Ritesh Raichoudhury Jill H. Sharma Leah Meyer Ravi K. Kshirsagar Aju Jose David E. Leaf Daniel E. Weiner Hsu Gupta Goyal Faugno Tariq Raichoudhury Sharma Meyer Kshirsagar Leaf Carl P. Walther Samaya J. Anumudu Justin Arunthamakun Kathleen F. Kopecky Gregory P. Milligan Peter A. McCullough Thuy-Duyen Nguyen Shahzad Shaefi Megan L. Krajewski Sidharth Shankar Ameeka Pannu Juan D. Valencia Kenneth A. Bauer Sushrut S. Waikar Zoé A. Kibbelaar Ambarish M. Athavale Peter Hart Shristi Upadhyay Ishaan Vohra Oyintayo Ajiboye Adam Green Jean-Sébastien Rachoin Christa Schorr Lisa Shea Daniel Edmonston Christopher L. Mosher Alexandre M. Shehata Zaza Cohen Valerie Allusson Gabriela Bambrick‐Santoyo Noor ul aain Bhatti Bijal Mehta Aquino WilliamsSamantha K. Brenner Patricia Walters Ronaldo C. Go Keith M. Rose Miguel A. Hernán Amy M. Zhou Ethan C. Kim Rebecca Lisk Lili Chan Kusum S. Mathews Steven G. Coca Deena R. Altman Aparna Saha Howard Soh Huei Hsun Wen Sonali Bose Emily Leven Jing G. Wang Gohar Mosoyan Pattharawin Pattharanitima Emily J. Gallagher Allon N. Friedman John Guirguis Rajat Kapoor Christopher Meshberger Katherine J. Kelly Chirag R. Parikh Brian T. Garibaldi Celia P. Corona‐Villalobos Yumeng Wen Steven Menez Rubab F. Malik Carmen Elena Cervantes Samir C. Gautam Mary C. Mallappallil Jie Ouyang Sabu John Ernie Yap Yohannes Adama Melaku Ibrahim Mohamed Siddhartha Bajracharya Isha Puri Mariah Thaxton Jyotsna Bhattacharya John E. Wagner Leon Boudourakis H. Bryant Nguyen Afshin Ahoubim Leslie F. Thomas Dheeraj Reddy Sirganagari

10.1053/j.ajkd.2021.11.004 article EN other-oa American Journal of Kidney Diseases 2021-12-04

In 2022 the World Health Organization declared a Public Emergency for an outbreak of mpox, zoonotic Orthopoxvirus (OPV) affecting at least 104 nonendemic locations worldwide. Serologic detection mpox infection is problematic, however, due to considerable antigenic and serologic cross-reactivity among OPVs smallpox-vaccinated individuals. this report, we developed high-throughput multiplex microsphere immunoassay using combination mpox-specific peptides cross-reactive OPV proteins that...

10.1002/jmv.29134 article EN Journal of Medical Virology 2023-10-01
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