Davide Bedognetti

ORCID: 0000-0002-5857-773X
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About
Contact & Profiles
Research Areas
  • Cancer Immunotherapy and Biomarkers
  • Immunotherapy and Immune Responses
  • Cancer Genomics and Diagnostics
  • Ferroptosis and cancer prognosis
  • CAR-T cell therapy research
  • Immune Cell Function and Interaction
  • Cancer-related molecular mechanisms research
  • Immune cells in cancer
  • Graphene and Nanomaterials Applications
  • Melanoma and MAPK Pathways
  • Single-cell and spatial transcriptomics
  • Lymphoma Diagnosis and Treatment
  • Advanced biosensing and bioanalysis techniques
  • Bioinformatics and Genomic Networks
  • Monoclonal and Polyclonal Antibodies Research
  • Neuroblastoma Research and Treatments
  • Colorectal Cancer Treatments and Studies
  • Nanoplatforms for cancer theranostics
  • Virus-based gene therapy research
  • SARS-CoV-2 and COVID-19 Research
  • MXene and MAX Phase Materials
  • Lung Cancer Treatments and Mutations
  • Cancer Cells and Metastasis
  • Nutrition, Genetics, and Disease
  • Radiomics and Machine Learning in Medical Imaging

Qatar Airways (Qatar)
2014-2025

University of Genoa
2010-2025

Ospedale Policlinico San Martino
2024-2025

Kite (United States)
2024-2025

Sidra Medical and Research Center
2014-2024

Hamad bin Khalifa University
2017-2024

The University of Queensland
2024

Westmead Institute for Medical Research
2024

University of Münster
2024

Qatar Foundation
2017-2023

Vésteinn Thórsson David L. Gibbs Scott D. Brown Denise M. Wolf Dante S. Bortone and 95 more Tai-Hsien Ou Yang Eduard Porta‐Pardo Galen F. Gao Christopher Plaisier James A. Eddy Elad Ziv Aedín C. Culhane Evan Paull I.K. Ashok Sivakumar Andrew J. Gentles Raunaq Malhotra Farshad Farshidfar Antonio Colaprico Joel S. Parker Lisle E. Mose Nam S. Vo Jianfang Liu Yuexin Liu Janet S. Rader Varsha Dhankani Sheila M. Reynolds Reanne Bowlby Andrea Califano Andrew D. Cherniack Dimitris Anastassiou Davide Bedognetti Younes Mokrab Aaron M. Newman Arvind Rao Ken Chen Alexander Krasnitz Hai Hu Tathiane M. Malta Houtan Noushmehr Chandra Sekhar Pedamallu Susan Bullman Akinyemi I. Ojesina Andrew Lamb Wanding Zhou Hui Shen Toni K. Choueiri John N. Weinstein Justin Guinney Joel Saltz Robert A. Holt Charles S. Rabkin Alexander J. Lazar Jonathan S. Serody Elizabeth G. Demicco Mary L. Disis Benjamin G. Vincent Ilya Shmulevich Rory Johnson John A. Demchok Ina Felau Melpomeni Kasapi Martin L. Ferguson Carolyn M. Hutter Heidi J. Sofia Roy Tarnuzzer Zhining Wang Liming Yang Jean C. Zenklusen Jiashan Zhang Sudha Chudamani Jia Liu Laxmi Lolla Rashi Naresh Todd Pihl Qiang Sun Yunhu Wan Ye Wu Juok Cho Timothy Defreitas Scott Frazer Nils Gehlenborg Gad Getz David I. Heiman Seungchan Kim Michael S. Lawrence Pei Lin Thomas J. Giordano Michael S. Noble Gordon Saksena Doug Voet Hailei Zhang Brady Bernard Nyasha Chambwe Varsha Dhankani Theo Knijnenburg Roger Kramer Kalle Leinonen Yuexin Liu Michael Miller Sheila M. Reynolds

We performed an extensive immunogenomic analysis of more than 10,000 tumors comprising 33 diverse cancer types by utilizing data compiled TCGA. Across types, we identified six immune subtypes—wound healing, IFN-γ dominant, inflammatory, lymphocyte depleted, immunologically quiet, and TGF-β dominant—characterized differences in macrophage or signatures, Th1:Th2 cell ratio, extent intratumoral heterogeneity, aneuploidy, neoantigen load, overall proliferation, expression immunomodulatory genes,...

10.1016/j.immuni.2018.03.023 article EN cc-by-nc-nd Immunity 2018-04-01

Mounting evidence supports a role for the immune system in breast cancer outcomes. The ability to distinguish highly immunogenic tumors susceptible anti-tumor immunity from weakly or inherently immune-resistant would guide development of therapeutic strategies cancer. Genomic, transcriptomic and clinical data Cancer Genome Atlas (TCGA) Molecular Taxonomy Breast International Consortium (METABRIC) cohorts were used examine statistical associations between tumor mutational burden (TMB)...

10.1080/2162402x.2018.1490854 article EN OncoImmunology 2018-07-30

Abstract In tumor-bearing mice, cyclic fasting or fasting-mimicking diets (FMD) enhance the activity of antineoplastic treatments by modulating systemic metabolism and boosting antitumor immunity. Here we conducted a clinical trial to investigate safety biological effects cyclic, five-day FMD in combination with standard therapies. 101 patients, was safe, feasible, resulted consistent decrease blood glucose growth factor concentration, thus recapitulating metabolic changes that mediate...

10.1158/2159-8290.cd-21-0030 article EN cc-by-nc-nd Cancer Discovery 2021-11-17

The lack of multi-omics cancer datasets with extensive follow-up information hinders the identification accurate biomarkers clinical outcome. In this cohort study, we performed comprehensive genomic analyses on fresh-frozen samples from 348 patients affected by primary colon cancer, encompassing RNA, whole-exome, deep T cell receptor and 16S bacterial rRNA gene sequencing tumor matched healthy tissue, complemented whole-genome for further microbiome characterization. A type 1 helper cell,...

10.1038/s41591-023-02324-5 article EN cc-by Nature Medicine 2023-05-01

Abstract The phase 3 ZUMA-7 trial in second-line large B cell lymphoma demonstrated superiority of anti-CD19 CAR T therapy (axicabtagene ciloleucel (axi-cel)) over standard care (SOC; salvage chemotherapy followed by hematopoietic transplantation) ( NCT03391466 ). Here, we present a prespecified exploratory analysis examining the association between pretreatment tumor characteristics and efficacy axi-cel versus SOC. gene expression signature (GES) CD19 associated significantly with improved...

10.1038/s41591-023-02754-1 article EN cc-by Nature Medicine 2024-01-17

Cancer immunotherapy is revolutionizing the clinical management of several tumors, but has demonstrated limited activity in breast cancer. The development more effective treatments hindered by incomplete knowledge genetic determinant immune responsiveness. To fill this gap, we mined copy number alteration, somatic mutation, and expression data from Genome Atlas (TCGA). By using RNA-sequencing 1,004 cancers, defined distinct phenotypes characterized progressive transcripts previously...

10.1080/2162402x.2016.1253654 article EN OncoImmunology 2017-02-01

Ultrasonography is a fundamental diagnostic imaging tool in everyday clinical practice. Here, we are unique describing the use of functionalized multiwalled carbon nanotubes (MWCNTs) as hyperechogenic material, suggesting their potential application ultrasound contrast agents. Initially, carried out thorough investigation to assess echogenic property vitro. We demonstrated long-lasting properties. also showed that signal MWCNTs higher than graphene oxide, pristine MWCNTs, and single-walled...

10.1073/pnas.1208312109 article EN Proceedings of the National Academy of Sciences 2012-09-24

Adoptive therapy with tumour-infiltrating lymphocytes (TILs) induces durable complete responses (CR) in ∼20% of patients metastatic melanoma. The recruitment T cells through CXCR3/CCR5 chemokine ligands is critical for immune-mediated rejection. We postulated that polymorphisms and/or expression TILs and the their tumour influence migration to tumours regression. Tumour-infiltrating from 142 melanoma enrolled adoptive trials were genotyped CXCR3 rs2280964 CCR5-Δ32 deletion, which encodes a...

10.1038/bjc.2013.557 article EN cc-by-nc-sa British Journal of Cancer 2013-10-01

Abstract Understanding the biomolecular interactions between graphene and human immune cells is a prerequisite for its utilization as diagnostic or therapeutic tool. To characterize complex cells, we propose an integrative analytical pipeline encompassing evaluation of molecular cellular parameters. Herein, use single-cell mass cytometry to dissect effects oxide (GO) GO functionalized with amino groups (GONH 2 ) on 15 cell populations, interrogating 30 markers at level. Next, integration...

10.1038/s41467-017-01015-3 article EN cc-by Nature Communications 2017-10-18
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