Kuldeep Singh

ORCID: 0000-0001-5239-6586
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Research Areas
  • Rice Cultivation and Yield Improvement
  • Genetic Mapping and Diversity in Plants and Animals
  • Agricultural Science and Fertilization
  • Plant Disease Resistance and Genetics
  • Wheat and Barley Genetics and Pathology
  • Plant Micronutrient Interactions and Effects
  • Genetics and Plant Breeding
  • Agricultural pest management studies
  • GABA and Rice Research
  • Agronomic Practices and Intercropping Systems
  • Agricultural Economics and Practices
  • Genetic and Environmental Crop Studies
  • Crop Yield and Soil Fertility
  • Plant Physiology and Cultivation Studies
  • Plant-Microbe Interactions and Immunity
  • Plant Pathogenic Bacteria Studies
  • Plant Genetic and Mutation Studies
  • Soybean genetics and cultivation
  • Sugarcane Cultivation and Processing
  • Chromosomal and Genetic Variations
  • Plant Virus Research Studies
  • Plant responses to water stress
  • Plant Pathogens and Fungal Diseases
  • Legume Nitrogen Fixing Symbiosis
  • Postharvest Quality and Shelf Life Management

International Crops Research Institute for the Semi-Arid Tropics
2022-2025

Punjab Agricultural University
2016-2025

Krishi Vigyan Kendra, Ghatkhed Amravati
2014-2025

Integral University
2015-2025

National Bureau of Plant Genetic Resources
2017-2024

International Crops Research Institute for the Semi-Arid Tropics
2024

Rajiv Gandhi University of Health Sciences
2024

Krishna Institute of Medical Sciences
2024

Bundelkhand University
2022-2024

National Institute of Technology Kurukshetra
2024

R. Appels Kellye Eversole Nils Stein Catherine Feuillet Beat Keller and 95 more Jane Rogers Curtis Pozniak Frédéric Choulet Assaf Distelfeld Jesse Poland Gil Ronen Andrew Sharpe Omer Barad Kobi Baruch Gabriel Keeble‐Gagnère Martin Mascher Gil Ben-Zvi Ambre-Aurore Josselin Axel Himmelbach François Balfourier Juan J. Gutiérrez-González Matthew Hayden ChuShin Koh Gary J. Muehlbauer Raj Pasam Etienne Paux Philippe Rigault Josquin Tibbits Vijay Tiwari M. Spannagl Daniel Lang Heidrun Gundlach Georg Haberer Klaus Mayer Danara Ormanbekova Verena M. Prade Hana Šimková Thomas Wicker David Swarbreck Hélène Rimbert Marius Felder Nicolas Guilhot Gemy Kaithakottil Jens Keilwagen Philippe Leroy Thomas Lux Sven Twardziok Luca Venturini Angéla Juhász Michaël Abrouk Iris Fischer Cristóbal Uauy Philippa Borrill Ricardo H. Ramírez-González Dominique Arnaud Smahane Chalabi Boulos Chalhoub Aron T. Cory Raju Datla Mark W. Davey John Jacobs Stephen J. Robinson Burkhard Steuernagel Fred van Ex Brande B. H. Wulff Moussa Benhamed Abdelhafid Bendahmane Lorenzo Concia David Latrasse Jan Bartoš Arnaud Bellec Hélène Bergès Jaroslav Doležel Zeev Frenkel Bikram Gill Abraham B. Korol Thomas Letellier Odd-Arne Olsen Kuldeep Singh Miroslav Valárik Edwin van der Vossen Sonia S. Vautrin Song Weining Tzion Fahima Vladimir Glikson Dina Raats Jarmila Číhalíková Helena Toegelová Jan Vrána Pierre Sourdille Benoît Darrier Delfina Barabaschi Luigi Cattivelli Pilar Hernández Sergio Gálvez Hikmet Budak Jonathan D. G. Jones Kamil Witek Guotai Yu Ian Small

Insights from the annotated wheat genome Wheat is one of major sources food for much world. However, because bread wheat's a large hybrid mix three separate subgenomes, it has been difficult to produce high-quality reference sequence. Using recent advances in sequencing, International Genome Sequencing Consortium presents an with detailed analysis gene content among subgenomes and structural organization all chromosomes. Examples quantitative trait mapping CRISPR-based modification show...

10.1126/science.aar7191 article EN Science 2018-08-17
Klaus Mayer Jane Rogers Jaroslav Doležel Curtis Pozniak Kellye Eversole and 91 more Catherine Feuillet Bikram Gill Bernd Friebe Adam J. Lukaszewski Pierre Sourdille Takashi R. Endo Marie Kubaláková Jarmila Číhalíková Zdeňka Dubská Jan Vrána Romana Šperková Hana Šimková Melanie Febrer Leah Clissold Kirsten McLay Kuldeep Singh Parveen Chhuneja Nagendra Kumar Singh Jitendra P. Khurana Eduard Akhunov Frédéric Choulet Adriana Alberti Valérie Barbe Patrick Wincker Hiroyuki Kanamori Fuminori Kobayashi Takeshi Itoh Takashi Matsumoto Hiroaki Sakai Tsuyoshi Tanaka Jian Wu Yasunari Ogihara Hirokazu Handa P. Ron Maclachlan Andrew Sharpe Darrin Klassen David Edwards Jacqueline Batley Odd-Arne Olsen Simen R. Sandve Sigbjørn Lien Burkhard Steuernagel Brande B. H. Wulff Mario Cáccamo Sarah Ayling Ricardo H. Ramírez-González Bernardo Clavijo Jonathan Wright Matthias Pfeifer M. Spannagl Mihaela M. Martis Martin Mascher Jarrod Chapman Jesse Poland Uwe Scholz Kerrie Barry Robbie Waugh Daniel S. Rokhsar Gary J. Muehlbauer Nils Stein Heidrun Gundlach Matthias Zytnicki Véronique Jamilloux Hadi Quesneville Thomas Wicker Primetta Faccioli Moreno Colaiacovo A. M. Stanca Hikmet Budak Luigi Cattivelli Natasha Glover Lise Pingault Etienne Paux Sapna Sharma R. Appels M. Bellgard Brendan Chapman Thomas Nußbaumer Kai Christian Bader Hélène Rimbert Shichen Wang R. E. Knox Andrzej Kilian Michaël Alaux Françoise Alfama L.J. Couderc Nicolas Guilhot Claire Viseux Mikaël Loaec Beat Keller Sébastien Praud

An ordered draft sequence of the 17-gigabase hexaploid bread wheat (Triticum aestivum) genome has been produced by sequencing isolated chromosome arms. We have annotated 124,201 gene loci distributed nearly evenly across homeologous chromosomes and subgenomes. Comparative analysis subgenomes extant diploid tetraploid relatives showed that high similarity structural conservation are retained, with limited loss, after polyploidization. However, genomes there was evidence dynamic gain,...

10.1126/science.1251788 article EN Science 2014-07-17
R. H. Ramírez-González Philippa Borrill Daniel Lang Sophie A. Harrington Jemima Brinton and 95 more Luca Venturini Mark W. Davey John Jacobs Frédéric Van Ex Asher Pasha Yogendra Khedikar Stephen J. Robinson Aron T. Cory Tobin Florio Lorenzo Concia Caroline Juéry Henk‐jan Schoonbeek Burkhard Steuernagel Daoquan Xiang Christopher J. Ridout Boulos Chalhoub Klaus Mayer Moussa Benhamed David Latrasse Abdelhafid Bendahmane Brande B. H. Wulff R. Appels Vijay Tiwari Raju Datla Frédéric Choulet Curtis Pozniak Nicholas J. Provart Andrew Sharpe Etienne Paux M. Spannagl Andrea Bräutigam Cristóbal Uauy Abraham B. Korol Andrew Sharpe Angéla Juhász Antje Rohde Arnaud Bellec Assaf Distelfeld Bala Anı Akpınar Beat Keller Benoît Darrier Bikram Gill Boulos Chalhoub Burkhard Steuernagel Catherine Feuillet Chanderkant Chaudhary Cristóbal Uauy Curtis Pozniak Danara Ormanbekova Daoquan Xiang David Latrasse David Swarbreck Delfina Barabaschi Dina Raats E. M. Sergeeva Е. А. Салина Etienne Paux Federica Cattonaro Frédéric Choulet Fuminori Kobayashi Gabriel Keeble‐Gagnère Gaganpreet Kaur Gary J. Muehlbauer George Kettleborough Guotai Yu Hana Šimková Heidrun Gundlach Hélène Bergès Hélène Rimbert Hikmet Budak Hirokazu Handa Ian Small Jan Bartoš Jane Rogers Jaroslav Doležel Jens Keilwagen Jesse Poland Joanna Melonek John Jacobs Jon Wright Jonathan D. G. Jones Juan J. Gutiérrez-González Kellye Eversole Kirby T. Nilsen Klaus Mayer K. Kanyuka Kuldeep Singh Liangliang Gao Lorenzo Concia Luca Venturini Luigi Cattivelli M. Spannagl Martin Mascher Matthew Hayden Michaël Abrouk

The coordinated expression of highly related homoeologous genes in polyploid species underlies the phenotypes many world's major crops. Here we combine extensive gene datasets to produce a comprehensive, genome-wide analysis homoeolog patterns hexaploid bread wheat. Bias varies between tissues, with ~30% wheat homoeologs showing nonbalanced expression. We found asymmetries along chromosomes, largest inter-tissue, inter-cultivar, and coding sequence variation, most often located...

10.1126/science.aar6089 article EN Science 2018-08-17
Thomas Marcussen Simen R. Sandve Lise Heier M. Spannagl Matthias Pfeifer and 94 more Kjetill S. Jakobsen Brande B. H. Wulff Burkhard Steuernagel Klaus Mayer Odd-Arne Olsen Jane Rogers Jaroslav Doležel Curtis Pozniak Kellye Eversole Catherine Feuillet Bikram Gill Bernd Friebe Adam J. Lukaszewski Pierre Sourdille Takashi R. Endo Marie Kubaláková Jarmila Číhalíková Zdeňka Dubská Jan Vrána Romana Šperková Hana Šimková Melanie Febrer Leah Clissold Kirsten McLay Kuldeep Singh Parveen Chhuneja Nagendra Kumar Singh Jitendra P. Khurana Eduard Akhunov Frédéric Choulet Adriana Alberti Valérie Barbe Patrick Wincker Hiroyuki Kanamori Fuminori Kobayashi Takeshi Itoh Takashi Matsumoto Hiroaki Sakai Tsuyoshi Tanaka Jian Wu Yasunari Ogihara Hirokazu Handa P. Ron Maclachlan Andrew Sharpe Darrin Klassen David Edwards Jacqueline Batley Sigbjørn Lien Mario Cáccamo Sarah Ayling Ricardo H. Ramírez-González Bernardo Clavijo Jonathan Wright Mihaela M. Martis Martin Mascher Jarrod Chapman Jesse Poland Uwe Scholz Kerrie Barry Robbie Waugh Daniel S. Rokhsar Gary J. Muehlbauer Nils Stein Heidrun Gundlach Matthias Zytnicki Véronique Jamilloux Hadi Quesneville Thomas Wicker Primetta Faccioli Moreno Colaiacovo A. M. Stanca Hikmet Budak Luigi Cattivelli Natasha Glover Lise Pingault Etienne Paux Sapna Sharma R. Appels M. Bellgard Brett Chapman Thomas Nussbaumer Kai Christian Bader Hélène Rimbert Shichen Wang R. E. Knox Andrzej Kilian Michaël Alaux Françoise Alfama L.J. Couderc Nicolas Guilhot Claire Viseux Mikaël Loaec Beat Keller Sébastien Praud

The allohexaploid bread wheat genome consists of three closely related subgenomes (A, B, and D), but a clear understanding their phylogenetic history has been lacking. We used assemblies five diploid relatives to analyze genome-wide samples gene trees, as well estimate evolutionary relatedness divergence times. show that the A B genomes diverged from common ancestor ~7 million years ago these gave rise D through homoploid hybrid speciation 1 2 later. Our findings imply present-day is product...

10.1126/science.1250092 article EN Science 2014-07-17

In a population-based study of 6,386 men and women aged 25–84 years in Tromsø, Norway, 1994–1995, the authors assessed age- sex-specific distribution abdominal aortic diameter prevalence risk factors for aneurysm. Renal infrarenal diameters were measured with ultrasound. The mean increased age. increase was more pronounced than women. age-related median less that diameter. An aneurysm present 263 (8.9%) 74 (2.2%) (p < 0.001). No person 48 found an Persons who had smoked 40 odds ratio 8.0...

10.1093/aje/154.3.236 article EN American Journal of Epidemiology 2001-08-01
Matthias Pfeifer Karl Kugler Simen R. Sandve Bujie Zhan Heidi Rudi and 95 more Torgeir R. Hvidsten Klaus Mayer Jane Rogers Jaroslav Doležel Curtis Pozniak Kellye Eversole Catherine Feuillet Bikram Gill Bernd Friebe Adam J. Lukaszewski Pierre Sourdille Takashi R. Endo Marie Kubaláková Jarmila Číhalíková Zdeňka Dubská Jan Vrána Romana Šperková Hana Šimková Melanie Febrer Leah Clissold Kirsten McLay Kuldeep Singh Parveen Chhuneja Nisha Singh Jitendra P. Khurana Eduard Akhunov Frédéric Choulet Adriana Alberti Valérie Barbe Patrick Wincker Hiroyuki Kanamori Fuminori Kobayashi Takeshi Itoh Takashi Matsumoto Hiroaki Sakai Tsuyoshi Tanaka Jian Wu Yasunari Ogihara Hirokazu Handa P. Ron Maclachlan Andrew Sharpe Darrin Klassen David Edwards Jacqueline Batley Odd-Arne Olsen Sigbjørn Lien Burkhard Steuernagel Brande B. H. Wulff Mario Cáccamo Sarah Ayling Ricardo H. Ramírez-González Bernardo Clavijo Jonathan Wright M. Spannagl Mihaela M. Martis Martin Mascher Jarrod Chapman Jesse Poland Uwe Scholz Kerrie Barry Robbie Waugh Daniel S. Rokhsar Gary J. Muehlbauer Nils Stein Heidrun Gundlach Matthias Zytnicki Véronique Jamilloux Hadi Quesneville Thomas Wicker Primetta Faccioli Moreno Colaiacovo A. M. Stanca Hikmet Budak Luigi Cattivelli Natasha Glover Lise Pingault Etienne Paux Sapna Sharma R. Appels M. Bellgard Brendan Chapman Thomas Nussbaumer Kai Christian Bader Hélène Rimbert Shichen Wang R. E. Knox Andrzej Kilian Michaël Alaux Françoise Alfama L.J. Couderc Nicolas Guilhot Claire Viseux Mikaël Loaec Beat Keller Sébastien Praud

Allohexaploid bread wheat ( Triticum aestivum L.) provides approximately 20% of calories consumed by humans. Lack genome sequence for the three homeologous and highly similar genomes (A, B, D) has impeded expression analysis grain transcriptome. We used previously unknown information to analyze cell type–specific genes in developing identified distinct co-expression clusters reflecting spatiotemporal progression during endosperm development. observed no global but type– stage-dependent...

10.1126/science.1250091 article EN Science 2014-07-17

Conventional weed management approaches are inefficient and non-suitable for integration with smart agricultural machinery. Automatic identification classification of weeds can play a vital role in contributing to better crop yields. Intelligent spot-spraying system's efficiency relies on the accuracy computer vision based detectors autonomous control. In present study, feasibility deep learning techniques (Alexnet, GoogLeNet, InceptionV3, Xception) were evaluated from RGB images bell pepper...

10.1016/j.aiia.2022.01.002 article EN cc-by-nc-nd Artificial Intelligence in Agriculture 2022-01-01

Micronutrients, especially iron (Fe) and zinc (Zn), are deficient in the diets of people underdeveloped countries. Biofortification food crops is best approach for alleviating micronutrient deficiencies. Identification germplasm with high grain Fe Zn understanding genetic basis their accumulation prerequisites manipulation these micronutrients. Some wild relatives wheat were found to have higher concentrations compared cultivated bread germplasm. One accession Triticum boeoticum (pau5088)...

10.1093/jhered/esp030 article EN Journal of Heredity 2009-06-11
Purva Mathur Paul Malpiedi Kāmini Walia Padmini Srikantiah Sunil Gupta and 95 more Ayush Lohiya Arunaloke Chakrabarti Pallab Ray Manisha Biswal Neelam Taneja Priscilla Rupali Balaji Veeraraghavan Camilla Rodrigues Vijaya Lakshmi Nag Vibhor Tak Vimala Venkatesh Chiranjay Mukhopadhyay Vijayshri Deotale Kanne Padmaja Chand Wattal Sanjay Bhattacharya Karuna Tadepalli Bijayini Behera Sanjeev Singh Reema Nath Raja Ray Sujata Baveja Bashir A Fomda Khumanthem Sulochana Devi Padma Das Neeta Khandelwal Prachi Verma Prithwis Bhattacharyya Rajni Gaind Lata Kapoor Neil Gupta Aditya Sharma Daniel VanderEnde Valan Siromany Kayla Laserson Randeep Guleria Rajesh Malhotra Omika Katoch Sonal Katyal Surbhi Khurana Subodh Kumar Richa Agrawal Kapil Soni Sushma Sagar Naveet Wig Pramod Kumar Garg Arti Kapil Rakesh Lodha Manoj Kumar Sahu Mahesh C. Misra Mamta Lamba Shristi Jain Hema Paul Joy Sarojini Michael Pradeep Bhatia Kuldeep Singh Neeraj Kumar Gupta Daisy Khera D Himanshu Sheetal Verma Prashant Gupta Mala Kumar Mohammed Pervez Khan Sarika Gupta Vandana Kalwaje Eshwara Muralidhar Varma Ruchita Attal Sukanya Sudhaharan Neeraj Goel Saurabh Saigal Sagar Khadanga Ayush Gupta M. A. Thirunarayan Nandini Sethuraman Ujjaini Roy Hirak Jyoti Raj Desma D'Souza Mammen Chandy Sudipta Mukherjee Manas Kumar Roy Gaurav Goel Swagata Tripathy Satyajeet Misra Anupam Dey Tushar Misra Rashmi Ranjan Das Gulnaz Bashir Shaista Nazir Khuraijam Ranjana Devi Langpoklakpam Chaoba Singh Anudita Bhargava Ujjwala Gaikwad Geeta Vaghela Tanvi Sukharamwala Anil Ch. Phukan

BackgroundHealth-care-associated infections (HAIs) cause significant morbidity and mortality globally, including in low-income middle-income countries (LMICs). Networks of hospitals implementing standardised HAI surveillance can provide valuable data on burden, identify monitor prevention gaps. Hospitals many LMICs use case definitions developed for higher-resourced settings, which require human resources laboratory imaging tests that are often not available.MethodsA network 26...

10.1016/s2214-109x(22)00274-1 article EN cc-by-nc-nd The Lancet Global Health 2022-08-09

Summary Bacterial blight (BB) of rice caused by Xanthomonas oryzae pv ( Xoo ) is one the major constraints to productivity in South-East Asia. The strategy using genes, singly or combination, continues be most effective approach for BB management. Currently, more than two dozen genes have been designated but not all known are against prevalent pathotypes. challenge, therefore, continue expand gene pool and potentially durable resistance genes. Wild species constitute an important reservoir...

10.1017/s0016672308009786 article EN Genetics Research 2008-10-01

One of the approaches for understanding functions genes predicted in rice genome requires use mutants.Mutations induced a given genetic background provide opportunities to assign function gene with minimum noise.This paper describes generation and initial characterization large set Ethyl Methane Sulphonate (EMS) mutants upland variety Nagina22, through National Initiative involving six Research Institutes namely

10.16943/ptinsa/2014/v80i1/55094 article EN DELETED 2014-03-19
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