Ziqing Yang

ORCID: 0000-0002-0492-0862
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About
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Research Areas
  • Natural Language Processing Techniques
  • RNA modifications and cancer
  • Topic Modeling
  • Cancer, Hypoxia, and Metabolism
  • SARS-CoV-2 and COVID-19 Research
  • Adenosine and Purinergic Signaling
  • Multimodal Machine Learning Applications
  • Stress Responses and Cortisol
  • Monoclonal and Polyclonal Antibodies Research
  • GDF15 and Related Biomarkers
  • vaccines and immunoinformatics approaches
  • Biochemical and Molecular Research
  • Adversarial Robustness in Machine Learning
  • Nanoplatforms for cancer theranostics
  • Cancer-related molecular mechanisms research
  • Cancer, Lipids, and Metabolism
  • Speech Recognition and Synthesis
  • COVID-19 Clinical Research Studies
  • Regulation of Appetite and Obesity
  • Ferroptosis and cancer prognosis
  • Effects of Radiation Exposure
  • Exercise and Physiological Responses
  • Radiomics and Machine Learning in Medical Imaging
  • Animal Virus Infections Studies
  • Adipose Tissue and Metabolism

Shandong University
2023-2025

North Sichuan Medical University
2025

Yunnan University of Traditional Chinese Medicine
2025

Tsinghua University
2021-2024

Sixth Affiliated Hospital of Sun Yat-sen University
2021-2024

Sun Yat-sen University
2020-2024

First Affiliated Hospital of Xinxiang Medical University
2024

Beijing Normal University
2019-2023

Xinxiang Medical University
2023

Xinxiang University
2023

Significance SARS-CoV-2 continues to evolve through emerging variants, more frequently observed with higher transmissibility. Despite the wide application of vaccines and antibodies, selection pressure on Spike protein may lead further evolution variants that include mutations can evade immune response. To catch up virus’s evolution, we introduced a deep learning approach redesign complementarity-determining regions (CDRs) target multiple virus obtained an antibody broadly neutralizes variants.

10.1073/pnas.2122954119 article EN cc-by Proceedings of the National Academy of Sciences 2022-03-01

Large Language Models (LLMs), such as ChatGPT and GPT-4, have dramatically transformed natural language processing research shown promising strides towards Artificial General Intelligence (AGI). Nonetheless, the high costs associated with training deploying LLMs present substantial obstacles to transparent, accessible academic research. While several large models, LLaMA, been open-sourced by community, these predominantly focus on English corpora, limiting their usefulness for other...

10.48550/arxiv.2304.08177 preprint EN other-oa arXiv (Cornell University) 2023-01-01

Abstract Gastric cancer (GC), one of the most common malignant tumors in world, exhibits a rapid metastasis rate and causes high mortality. Diagnostic markers potential therapeutic targets for GCs are urgently needed. Here we show that Actin-like protein 6 A (ACTL6A), encoding an SWI/SNF subunit, is highly expressed GCs. ACTL6A found to be critical regulating glutathione (GSH) metabolism pathway because it upregulates γ-glutamyl-cysteine ligase catalytic subunit (GCLC) expression, thereby...

10.1038/s41467-023-39901-8 article EN cc-by Nature Communications 2023-07-13

Abstract Background NOP2/Sun domain 2 (NSUN2) is one of the important RNA methyltransferases catalyzing 5‐methylcytosine (m5C) formation and participates in many critical bioprocesses. However, roles underlying molecular mechanisms NSUN2‐mediated m5C modification colorectal cancer (CRC) remain unclear. Methods To explore NSUN2 expression CRC, fresh tissue samples were collected Nsun2 knockout mouse was constructed. In vitro vivo functional assays conducted to assess role NSUN2. array...

10.1002/ctm2.1621 article EN cc-by Clinical and Translational Medicine 2024-03-01

As SARS-CoV-2 Omicron and other variants of concern (VOCs) continue spreading worldwide, development antibodies vaccines to confer broad protective activity is a global priority. Here, we report on the identification special group nanobodies from immunized alpaca with potency against diverse VOCs including subvariants BA.1, BA.2 BA.4/5, SARS-CoV-1, major sarbecoviruses. Crystal structure analysis one representative nanobody, 3-2A2-4, discovers highly conserved epitope located between cryptic...

10.1038/s41467-022-35642-2 article EN cc-by Nature Communications 2022-12-27

Misuse of the Large Language Models (LLMs) has raised widespread concern. To address this issue, safeguards have been taken to ensure that LLMs align with social ethics. However, recent findings revealed an unsettling vulnerability bypassing LLMs, known as jailbreak attacks. By applying techniques, such employing role-playing scenarios, adversarial examples, or subtle subversion safety objectives a prompt, can produce inappropriate even harmful response. While researchers studied several...

10.48550/arxiv.2402.05668 preprint EN arXiv (Cornell University) 2024-02-08

Abstract Epstein-Barr virus (EBV) is associated with a range of epithelial and B cell malignancies as well autoimmune disorders, for which there are still no specific treatments or effective vaccines. Here, we isolate EBV gH/gL-specific antibodies from an EBV-infected individual. One antibody, 1D8, efficiently neutralizes infection two major target types, cells cells. In humanized mice, 1D8 provides protection against high-dose challenge by substantially reducing viral loads tumor burden....

10.1038/s41467-021-26912-6 article EN cc-by Nature Communications 2021-11-16

Colorectal cancer (CRC) is one of the most common cancers in China. However, detailed clinical characteristics and survival information are limited. This study aimed to investigate potential epidemiological risk factors affecting CRC patients southern China.Patients with primary between 1994 2019 at First Sixth Affiliated Hospitals Sun Yat-sen University (Guangzhou, China) were included. Clinical outcomes collected from medical records. The Kaplan-Meier method was used estimate overall (OS)...

10.1093/gastro/goab048 article EN cc-by-nc Gastroenterology report 2021-10-16

Pre-trained Language Models (PLMs) have been widely used in various natural language processing (NLP) tasks, owing to their powerful text representations trained on large-scale corpora. In this paper, we propose a new PLM called PERT for understanding (NLU). is an auto-encoding model (like BERT) with Permuted Model (PerLM). The formulation of the proposed PerLM straightforward. We permute proportion input text, and training objective predict position original token. Moreover, also apply...

10.48550/arxiv.2203.06906 preprint EN cc-by-nc-sa arXiv (Cornell University) 2022-01-01

Abstract Metabolic reprogramming can contribute to colorectal cancer progression and therapy resistance. Identification of key regulators metabolism could provide new approaches improve treatment reduce recurrence. Here, we demonstrate a critical role for the COP9 signalosome subunit CSN6 in rewiring nucleotide cancer. Transcriptomic analysis patient samples revealed correlation between expression purine pyrimidine metabolism. A colitis-associated model established that Csn6 intestinal...

10.1158/0008-5472.can-22-2145 article EN Cancer Research 2022-12-13

Large language models (LLMs) have facilitated the generation of high-quality, cost-effective synthetic data for developing downstream and conducting statistical analyses in various domains. However, increased reliance on may pose potential negative impacts. Numerous studies demonstrated that LLM-generated can perpetuate even amplify societal biases stereotypes, produce erroneous outputs known as ``hallucinations'' deviate from factual knowledge. In this paper, we aim to audit artifacts, such...

10.48550/arxiv.2502.00808 preprint EN arXiv (Cornell University) 2025-02-02

Human-AI conversations have gained increasing attention since the era of large language models. Consequently, more techniques, such as input/output guardrails and safety alignment, are proposed to prevent potential misuse conversations. However, ability identify these has significant implications, both for adversarial exploitation auditing purposes by red team operators. In this work, we propose a novel method, AP-Test, which identifies presence candidate guardrail leveraging...

10.48550/arxiv.2502.01241 preprint EN arXiv (Cornell University) 2025-02-03

At present, tumor immune escape is a major problem in the treatment of tumors. The complex network microenvironments significantly impairs efficacy immunotherapy. This paper reports preparation and immunoantitumor activity novel multifunctional defect tungsten trioxide@ferrocene-folic acid composite (WO3-x@Fe-FA) with high Fenton reaction rate. Ferrocene modified on surface defective trioxide by covalent coupling method for first time, rate increased 10 times. WO3-x@Fe-FA induces immunogenic...

10.1002/smll.202500104 article EN Small 2025-03-06

Abstract Circulating tumor DNA (ctDNA) offers a noninvasive method to assess tumor-specific mutations. This retrospective study investigated the concordance of genomic variations between ctDNA and tissue its influence factors. Paired blood samples were collected from 1, 111 patients with ten types underwent sequencing 425 genes. We evaluated relationship concentration cell-free (cfDNA), sensitivity ctDNA, mutation landscape, variant allele frequency, various clinical parameters. The median...

10.1158/1538-7445.am2025-1956 article EN Cancer Research 2025-04-21
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