Yasir H. Ahmed-Braimah

ORCID: 0000-0002-5805-5894
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About
Contact & Profiles
Research Areas
  • Animal Behavior and Reproduction
  • Insect and Arachnid Ecology and Behavior
  • Insect symbiosis and bacterial influences
  • Genetic diversity and population structure
  • Plant and animal studies
  • Neurobiology and Insect Physiology Research
  • Invertebrate Immune Response Mechanisms
  • Mosquito-borne diseases and control
  • Insect Resistance and Genetics
  • Genomics and Phylogenetic Studies
  • Chromosomal and Genetic Variations
  • CRISPR and Genetic Engineering
  • RNA Interference and Gene Delivery
  • Ferroptosis and cancer prognosis
  • Genetics, Aging, and Longevity in Model Organisms
  • Immune cells in cancer
  • RNA modifications and cancer
  • Silk-based biomaterials and applications
  • Genetic Mapping and Diversity in Plants and Animals
  • Insect-Plant Interactions and Control
  • Vector-Borne Animal Diseases
  • melanin and skin pigmentation
  • Viral Infections and Vectors
  • Immune responses and vaccinations
  • Genetic and Kidney Cyst Diseases

Syracuse University
2020-2024

Cornell University
2016-2020

University of Iowa
2012-2019

University of Rochester
2012-2017

Hongjie Li Jasper Janssens Maxime De Waegeneer Sai Saroja Kolluru Kristofer Davie and 95 more Vincent Gardeux Wouter Saelens Fabrice David Maria Brbić Katina I. Spanier Jure Leskovec Colleen N. McLaughlin Qijing Xie Robert C. Jones Katja Brueckner Jiwon Shim Sudhir Gopal Tattikota Frank Schnorrer Katja Rust Todd Nystul Zita Carvalho-Santos Carlos Ribeiro Soumitra Pal Sharvani Mahadevaraju Teresa M. Przytycka Aaron M. Allen Stephen F. Goodwin Cameron W. Berry Margaret T. Fuller Helen White‐Cooper Erika Matunis Stephen DiNardo Anthony Galenza Lucy Erin O’Brien Julian A. T. Dow Heinrich Jasper Brian Oliver Norbert Perrimon Bart Deplancke Stephen R. Quake Liqun Luo Stein Aerts Devika Agarwal Yasir H. Ahmed-Braimah Michelle N Arbeitman Majd Ariss Jordan Augsburger Kumar Ayush Catherine C. Baker Torsten U. Banisch Katja Birker Rolf Bodmer Benjamin Bolival Susanna E. Brantley Julie A. Brill Nora C. Brown Norene A. Buehner Xiaoyu Cai Rita Cardoso-Figueiredo Fernando Casares Amy K. Chang Thomas R. Clandinin Sheela Crasta Claude Desplan Angela M. Detweiler Darshan B. Dhakan Erika Donà Stefanie Engert Swann Floc’hlay Nancy George Amanda J. González-Segarra Andrew K. Groves Samantha C. Gumbin Yanmeng Guo D. Harris Yael Heifetz Stephen L. Holtz Felix Horns Bruno Hudry Ruei‐Jiun Hung Yuh Nung Jan Jacob S Jaszczak Gregory S.X.E. Jefferis Jim Karkanias Timothy L. Karr Nadja Sandra Katheder James Kezos Anna Kim Seung K. Kim Lutz Kockel Νικόλαος Κωνσταντινίδης Thomas B. Kornberg Henry M. Krause Andrew Thomas Labott Meghan Laturney Ruth Lehmann Sarah G. Leinwand Jun Li Joshua Shing Shun Li Kai Li

For more than 100 years, the fruit fly

10.1126/science.abk2432 article EN Science 2022-03-03

The Aedes aegypti mosquito is a significant public health threat, as it the main vector of dengue and chikungunya viruses. Disease control efforts could be enhanced through reproductive manipulation these vectors. Previous work has revealed relationship between male seminal fluid proteins transferred to females during mating female post-mating physiology behavior. To better understand this interplay, we used short-read RNA sequencing identify gene expression changes in lower tract response...

10.1371/journal.pntd.0004451 article EN cc-by PLoS neglected tropical diseases 2016-02-22

The yellow fever mosquito, Aedes aegypti, transmits several viruses causative of serious diseases, including dengue, Zika, and chikungunya. Some proposed efforts to control this vector involve manipulating reproduction suppress wild populations or replace them with disease-resistant mosquitoes. design such strategies requires an intimate knowledge reproductive processes, yet our basic understanding genetics in remains largely incomplete. To accelerate future investigations, we have...

10.1074/mcp.ra118.001067 article EN cc-by Molecular & Cellular Proteomics 2018-12-15

Abstract Postcopulatory sexual selection (PCSS) is a potent evolutionary force that can drive rapid changes of reproductive genes within species, and thus has the potential to generate incompatibilities between species. Male seminal fluid proteins (SFPs) are major players in postmating interactions, important targets PCSS males. The virilis subgroup Drosophila exhibits strong interspecific gametic incompatibilities, serve as model study genetic basis isolation. However, this group have not...

10.1534/g3.117.1136 article EN cc-by G3 Genes Genomes Genetics 2017-07-25

Abstract Aedes aegypti mosquitoes are the primary vectors of numerous viruses that impact human health. As manipulation reproduction has been proposed to suppress mosquito populations, elucidation biological processes enable males and females successfully reproduce is necessary. One essential process female sperm storage in specialized structures called spermathecae. typically mate once, requiring them maintain viably fertilize eggs they lay over their lifetime. Spermathecal gene products...

10.1038/s41598-020-71904-z article EN cc-by Scientific Reports 2020-09-10

Abstract In many animal species, females undergo physiological and behavioral changes after mating. Some of these are driven by male-derived seminal fluid proteins critical for fertilization success. Unfortunately, our understanding the molecular interplay between female male reproductive remains inadequate. Here, we analyze postmating response in a Drosophila species that has evolved strong gametic incompatibility with its sister species; novamexicana produce only ∼1% fertilized eggs...

10.1093/molbev/msaa264 article EN cc-by-nc Molecular Biology and Evolution 2020-10-07

Abstract Understanding the genetic basis of speciation is a central problem in evolutionary biology. Studies reproductive isolation have provided several insights into causes speciation, especially taxa that lend themselves to detailed scrutiny. Reproductive barriers usually been divided those occur before zygote formation (prezygotic) and after (postzygotic), with latter receiving great deal attention over decades. mating but [postmating prezygotic (PMPZ)] are understudied at level. Here, I...

10.1534/g3.116.033340 article EN cc-by G3 Genes Genomes Genetics 2016-10-25

The virilis group of Drosophila represents a relatively unexplored but potentially useful model to investigate the genetics speciation. Good resolution phylogenetic relationships and ability obtain fertile hybrid offspring make especially promising for analysis genetic changes underlying reproductive isolation separate from sterility inviability. Phylogenetic analyses reveal close relationship between sister species, americana D. novamexicana , yet excepting their contemporary allopatric...

10.1155/2012/285468 article EN cc-by International Journal of Evolutionary Biology 2012-01-18

Abstract The genetic basis of species differences remains understudied. Studies in insects have contributed significantly to our understanding morphological evolution. Pigmentation traits particular received a great deal attention and several genes the insect pigmentation pathway been implicated inter- intraspecific differences. Nonetheless, much unknown about many this their potential role understudied taxa. Here we genetically analyze puparium color difference between members virilis group...

10.1534/genetics.115.174920 article EN Genetics 2015-03-13

In almost all animals studied to date, the crucial process of egg activation, by which an arrested mature oocyte transitions into actively developing embryo, initiates with increase in Ca

10.1074/mcp.ra118.001076 article EN cc-by Molecular & Cellular Proteomics 2018-11-26

Abstract Drosophila melanogaster females undergo a variety of post-mating changes that influence their activity, feeding behavior, metabolism, egg production and gene expression. These are induced either by mating itself or sperm seminal fluid proteins. In addition, studies have shown axenic females—those lacking microbiome—have altered fecundity compared to with microbiome, the microbiome female’s mate can reproductive success. However, extent which in transcript abundance affected state is...

10.1038/s41598-020-75156-9 article EN cc-by Scientific Reports 2020-10-23

Abstract Background Mating induces behavioral and physiological changes in the arbovirus vector Aedes aegypti , including stimulation of egg development oviposition, increased survival, reluctance to re-mate with subsequent males. Transferred seminal fluid proteins peptides derived from male accessory glands induce these changes, though mechanism by which they do this is not known. Results To determine transcriptome induced proteins, we injected extract vesicles (MAG extract) into females...

10.1186/s12864-021-08201-0 article EN cc-by BMC Genomics 2021-12-15

Abstract A vast diversity of karyotypes exists within and between species, yet the mechanisms that shape this are poorly understood. Here we investigate role biased meiotic segregation—i.e., drive—in karyotype evolution. The closely related Drosophila americana D. novamexicana , provide an ideal system to karyotypic diversification. Since their recent divergence, has evolved two centromeric fusions: one 2nd 3rd chromosomes, another X 4th chromosomes. 2-3 fusion is fixed in but X-4...

10.1101/638684 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2019-05-24

Abstract Seminal fluid protein composition is complex and commonly assumed to be rapidly divergent due functional interactions with both sperm the female reproductive tract (FRT), of which evolve rapidly. In addition sperm, seminal may contain structures, such as mating plugs spermatophores. Here, we investigate evolutionary diversification a lesser‐known ejaculate structure: spermatostyle, has independently arisen in several families beetles true bugs. We characterized spermatostyle...

10.1002/mrd.23745 article EN cc-by-nc Molecular Reproduction and Development 2024-05-01

Reproductive traits often evolve rapidly between species. Understanding the causes and consequences of this rapid divergence requires characterization female male reproductive proteins their effect on fertilization success. Species in Drosophila virilis clade exhibit rampant interspecific incompatibilities, making them ideal for studies diversification role speciation. Importantly, intraejaculate protein abundance allocation is poorly understood. Here, we identify quantify transferred...

10.1016/j.mcpro.2023.100610 article EN cc-by Molecular & Cellular Proteomics 2023-06-29

Abstract Terminal nucleotidyltransferases add nucleotides to the 3′ end of RNA modify their stability and function. In Caenorhabditis elegans, terminal uridyltransferases/poly(U) polymerases PUP-1 (aka CID-1, CDE-1), PUP-2, PUP-3 affect germline identity, survival, development. Here, we identify small (sRNA) mRNA targets these PUPs a fourth predicted poly(U) polymerase, F43E2.1/PUP-4. Using genetic sequencing approaches, each PUP U-tail frequency length those targets. At whole organism...

10.1093/genetics/iyae120 article EN cc-by Genetics 2024-07-27

Abstract The yellow fever mosquito, Aedes aegypti, transmits several viruses, including dengue, Zika, and chikungunya. Some proposed efforts to control this vector involve manipulating reproduction suppress wild populations or replacing them with disease-resistant mosquitoes. design of such strategies requires an intimate knowledge reproductive processes, yet our basic understanding genetics in remains largely incomplete. To accelerate future investigations, we have comprehensively...

10.1101/405431 preprint EN cc-by bioRxiv (Cold Spring Harbor Laboratory) 2018-08-31

Capturing and sequencing small RNAs is standard practice; however, identification of a group these RNAs-small interfering (siRNAs)-has been more difficult. We present smalldisco, command-line tool for RNA discovery annotation from RNA-seq datasets. smalldisco can distinguish short reads that map antisense to an annotated genomic feature (e.g. exons or mRNAs), annotate siRNAs, quantify their abundance. also uses the program Tailor 3' nontemplated nucleotides siRNAs any species. supporting...

10.1093/g3journal/jkad092 article EN cc-by G3 Genes Genomes Genetics 2023-04-24

Abstract The genetic basis of species differences remains understudied. Studies in insects have contributed significantly to our understanding morphological evolution. Pigmentation traits particular received a great deal attention and several genes the insect pigmentation pathway been implicated inter- intraspecific differences. Nonetheless, much unknown about many this their potential role understudied taxa. Here we genetically analyze puparium color difference between members Virilis group...

10.1101/014464 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2015-01-27

High-quality genome assemblies across a range of nontraditional model organisms can accelerate the discovery novel aspects evolution. The Drosophila virilis group has several attributes that distinguish it from more highly studied species in genus, such as an unusual abundance repetitive elements and extensive karyotype evolution, addition to being attractive for speciation genetics. Here, we used long-read sequencing assemble five genomes three characterized sequence structural divergence...

10.1093/gbe/evad238 article EN cc-by Genome Biology and Evolution 2023-12-30

Abstract In many animal species, females undergo physiological and behavioral changes after mating. Some of these are driven by male-derived seminal fluid proteins, critical for fertilization success. Unfortunately, our understanding the molecular interplay between female male reproductive proteins remains superficial. Here we analyze post-mating response in a Drosophila species that has evolved strong gametic incompatibility with its sister species; D. novamexicana produce only 1%...

10.1101/2020.03.25.009068 preprint EN cc-by bioRxiv (Cold Spring Harbor Laboratory) 2020-03-26

Abstract Postcopulatory sexual selection (PCSS) is a potent evolutionary force that can drive rapid changes of reproductive genes within species, and thus has the potential to generate incompatibilities between species. Male seminal fluid proteins (SFPs) are major players in postmating interactions, likely main targets PCSS males. The virilis subgroup Drosophila exhibits strong interspecific gametic incompatibilities, serve as model study genetic basis isolation. However, this group have not...

10.1101/111377 preprint EN cc-by bioRxiv (Cold Spring Harbor Laboratory) 2017-02-24

Abstract Drosophila melanogaster females undergo a variety of post-mating changes that influence their activity, feeding behavior, metabolism, egg production and gene expression. These are induced either by mating itself or sperm seminal fluid proteins. In addition, studies have shown axenic females—those lacking microbiome—have altered fecundity compared to with microbiome, the microbiome female’s mate can reproductive success. However, extent which in transcript abundance affected state is...

10.1101/2020.05.30.125427 preprint EN cc-by-nd bioRxiv (Cold Spring Harbor Laboratory) 2020-05-31
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