A5101817741- Genomics and Phylogenetic Studies
- Cancer-related molecular mechanisms research
- Plant and Fungal Species Descriptions
- MicroRNA in disease regulation
- Natural product bioactivities and synthesis
- Circular RNAs in diseases
- Medicinal Plant Pharmacodynamics Research
- Traditional Chinese Medicine Analysis
- Genetic diversity and population structure
- Mycorrhizal Fungi and Plant Interactions
- Photosynthetic Processes and Mechanisms
- Plant Diversity and Evolution
- Plant biochemistry and biosynthesis
- Advanced Proteomics Techniques and Applications
- RNA modifications and cancer
- Biological and pharmacological studies of plants
- Microbial Natural Products and Biosynthesis
- Fungal Biology and Applications
- Cancer, Hypoxia, and Metabolism
- Legume Nitrogen Fixing Symbiosis
- Plant Gene Expression Analysis
- Vibrio bacteria research studies
- Plant Pathogens and Fungal Diseases
- Identification and Quantification in Food
- Plant Molecular Biology Research
Northwest Institute of Nuclear Technology
2024
Zhejiang University
2024
Zhejiang Lab
2024
Beijing Sport University
2024
Nanjing Forestry University
2015-2023
China National Center for Food Safety Risk Assessment
2006-2021
The Second Affiliated Hospital of Bengbu Medical College
2021
Key Laboratory of Guangdong Province
2018
South China Agricultural University
2018
First Affiliated Hospital of Xinxiang Medical University
2014-2017
The presence of duplicates introduced by PCR amplification is a major issue in paired short reads from next-generation sequencing platforms. These might have serious impact on research applications, such as scaffolding whole-genome and discovering large-scale genome variations, are usually removed. We present FastUniq fast de novo tool for removal reads. identifies comparing sequences between read pairs does not require complete prerequisites. capable simultaneously handling with different...
Salvia miltiorrhiza is an important medicinal plant with great economic and value. The complete chloroplast (cp) genome sequence of miltiorrhiza, the first sequenced member Lamiaceae family, reported here. 151,328 bp in length exhibits a typical quadripartite structure large (LSC, 82,695 bp) small (SSC, 17,555 single-copy regions, separated by pair inverted repeats (IRs, 25,539 bp). It contains 114 unique genes, including 80 protein-coding 30 tRNAs four rRNAs. structure, gene order, GC...
The genus Liriodendron belongs to the family Magnoliaceae, which resides within magnoliids, an early diverging lineage of Mesangiospermae. However, phylogenetic relationship magnoliids with eudicots and monocots has not been conclusively resolved thus remains be determined
Salvia miltiorrhiza is a Chinese herb with significant pharmacologic effects because of the bioactive compounds tanshinones and phenolic acids. Methyl jasmonate ( MeJA ) has been used as an effective elicitor to enhance production these compounds. However, molecular mechanism ‐mediated tanshinone salvianolic acid biosynthesis remains unclear. The transcriptional profiles S. leaves at 12 h T12 after elicitation mock‐treated T0 were generated using Illumina deep RNA sequencing ‐seq) strategy...
Summary A circular consensus sequencing ( CCS ) strategy involving single molecule, real‐time SMRT DNA technology was applied to de novo assembly and nucleotide polymorphism SNP detection of chloroplast genomes. Chloroplast purified from enriched chloroplasts pooled individuals construct a shotgun library for each species. The reactions were performed on PacBio RS platform. sub‐reads generated polymerase reads that passed the native dumbbell‐shaped templates multiple times. complete genome...
Metasequoia glyptostroboides Hu et Cheng is the only species in genus Miki ex Cheng, which belongs to Cupressaceae family. There were around ten genus, widely spread across Northern Hemisphere during Cretaceous of Mesozoic and Cenozoic. M. remaining representative this genus. Here, we report complete chloroplast (cp) genome sequence cp genomic features glyptostroboides. The 131,887 bp length, with a total 117 genes comprised 82 protein-coding genes, 31 tRNA four rRNA genes. In genome, 11...
Fungi have evolved powerful genomic and chemical defense systems to protect themselves against genetic destabilization other organisms. However, the precise molecular basis involved in fungal remain largely unknown Basidiomycetes. Here complete genome sequence, as well DNA methylation patterns small RNA transcriptomes, was analyzed provide a holistic overview of secondary metabolism processes model medicinal fungus, Ganoderma sinense. We reported 48.96 Mb sequence G. sinense, consisting 12...
Circular RNAs (circRNAs) play a critical regulatory role in degenerative diseases; however, their functions and therapeutic applications intervertebral disc degeneration (IVDD) have not been explored. Here, we identified that novel circATXN1 highly accumulates aging nucleus pulposus cells (NPCs) accountable for IVDD. CircATXN1 accelerates cellular senescence, disrupts extracellular matrix organization, inhibits mitochondrial respiration. Mechanistically, circATXN1, regulated by heterogeneous...
Cycling is a flexible way of traveling that can promote the development urban public transportation. Previous studies on influence cycling have focused more cyclists themselves, ignoring influences features natural environments, such as streetscapes and land surface temperatures (LSTs), behavior. Therefore, in this study, street view image data Landsat 8 imagery were utilized to extract streetscape LST features; particular, framework was established for single-indicator analysis...
Glyptostrobus pensilis, belonging to the monotypic genus (Family: Cupressaceae), is an ancient conifer that naturally distributed in low-lying wet areas. Here, we report complete chloroplast (cp) genome sequence (132,239 bp) of G. pensilis. The pensilis cp similar gene content, organization and structure sequenced genomes from other cupressophytes, especially with respect loss inverted repeat region A (IRA). Through phylogenetic analysis, demonstrated closely related Cryptomeria, supporting...
Feline kobuvirus (FeKoV) is a newly discovered organism, classified under the species Aichivirus A of genus Kobuvirus. Since it was first reported in 2013, molecular evidence for FeKoV feline population has been restricted to two countries: Korea and Italy. In this study, we collected faecal samples from cats southern China detected RNA these samples. prevalence rate 9.9% (8/81) identified by RT-PCR, all positive were obtained diarrhoeic animals. addition, shown associated with diarrhoea...
Owing to its cardiovascular therapeutical effects, icariin, a flavonoid isolated from Epimedii herba, is considered be the major active constituent of herba. The aim this study investigate effect icariin on precontracted coronary artery canine. Coronary segments were normal anesthetized Beagle dogs and cut into 5-mm rings. rings mounted in an organ chamber contracted by either 40 mM KCl or 10 μM PGF2α, vasorelaxant tone was measured. Treatment could significantly produce relaxation arterial...
Colletotrichum gloeosporioides is a hemibiotrophic pathogen causing significant losses to economically important crops and forest trees, including Liriodendron. To explore the interaction between C. Liriodendron identify candidate genes determining pathogenesis, we sequenced assembled whole genome of Lc1 (CgLc1) using PacBio Illumina next generation sequencing performed comparative genomic analysis CgLc1 Cg01, latter being described endophytic species complex. Gene structure prediction...
Colletotrichum has a broad host range and causes major yield losses of crops. The fungus gloeosporioides is associated with anthracnose on Chinese fir. In this study, we present high-quality draft genome sequence C. sensu stricto SMCG1#C, providing reference genomic data for further research fir other hosts.
Nitraria sibirica is a halophyte and belongs to the family Nitrariaceae. The chloroplast genome of (159,466 bp) has quadripartite structure, which consists large single-copy (87,914 region, small (18,316 pair inverted repeats (26,618 bp). Sequencing analyses indicate that contains 113 distinct genes, including 79 peptide-coding 30 transfer RNA 4 ribosomal genes. We also identified 105 perfect simple sequence repeats, 12 most divergent non-coding regions, 6 coding regions when compared...