Aslı Çakır

ORCID: 0000-0003-0128-6947
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About
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Research Areas
  • Glioma Diagnosis and Treatment
  • Breast Cancer Treatment Studies
  • Cancer and Skin Lesions
  • Metastasis and carcinoma case studies
  • Lymphoma Diagnosis and Treatment
  • AI in cancer detection
  • Breast Lesions and Carcinomas
  • Teratomas and Epidermoid Cysts
  • Radiomics and Machine Learning in Medical Imaging
  • Salivary Gland Tumors Diagnosis and Treatment
  • Head and Neck Surgical Oncology
  • Reproductive System and Pregnancy
  • Cholangiocarcinoma and Gallbladder Cancer Studies
  • Viral-associated cancers and disorders
  • Gastric Cancer Management and Outcomes
  • Endometriosis Research and Treatment
  • Musculoskeletal synovial abnormalities and treatments
  • Meningioma and schwannoma management
  • Cutaneous Melanoma Detection and Management
  • HER2/EGFR in Cancer Research
  • Hematopoietic Stem Cell Transplantation
  • Cancer Diagnosis and Treatment
  • Prostate Cancer Treatment and Research
  • Cancer Immunotherapy and Biomarkers
  • Acute Myeloid Leukemia Research

Istanbul Medipol University
2015-2024

Dokuz Eylül University
2016-2024

Gebze Technical University
2024

Sağlık Bilimleri Üniversitesi
2024

University of Health Science
2024

Istanbul University
1993-2019

Gazi University
2008-2014

Sivas State Hospital
2011-2013

State Hospital
2012

Abstract Artificial intelligence (AI) has shown promise for diagnosing prostate cancer in biopsies. However, results have been limited to individual studies, lacking validation multinational settings. Competitions be accelerators medical imaging innovations, but their impact is hindered by lack of reproducibility and independent validation. With this mind, we organized the PANDA challenge—the largest histopathology competition date, joined 1,290 developers—to catalyze development...

10.1038/s41591-021-01620-2 article EN cc-by Nature Medicine 2022-01-01

The Gleason score is the most important prognostic marker for prostate cancer patients, but it suffers from significant observer variability. Artificial intelligence (AI) systems based on deep learning can achieve pathologist-level performance at grading. However, of such degrade in presence artifacts, foreign tissue, or other anomalies. Pathologists integrating their expertise with feedback an AI system could result a synergy that outperforms both individual pathologist and system. Despite...

10.1038/s41379-020-0640-y article EN cc-by Modern Pathology 2020-08-05

There are virtually no data in the literature regarding incidence, patterns, and clinicopathologic characteristics of mucinous carcinomas (MCs) gallbladder (GB).To determine incidence differentiation invasive GB those that qualify as MC.Primary (n = 606) were reviewed for differentiation. Some degree mucin production was identified 40 cases (6.6%); however, only 15 (2.5%) qualified World Health Organization definition MC (stromal deposition constituting >50% tumor).The mean age 65 years,...

10.5858/arpa.2011-0447-oa article EN Archives of Pathology & Laboratory Medicine 2012-10-30

We describe a clinicopathologically distinct subtype of cholecystitis, the extensively calcific version which has been presented in clinical literature as "porcelain gallbladder (PG)." This we propose to refer hyalinizing cholecystitis (HC), is characterized by dense, paucicellular hyaline fibrosis transforming (GB) wall into relatively thin and uniform band. The process diffusely effaces most normal structures GB, some cases show calcifications. To determine clinicopathologic associations...

10.1097/pas.0b013e31822179cc article EN The American Journal of Surgical Pathology 2011-06-30

Breast carcinomas can be classified into five subtypes based on gene expression profiling or immunohistochemical characteristics. Among these subtypes, basal-like breast (BLBCs) are one of the most studied group, due to their poor prognosis. The aim this study was investigate prevalance, morphological and features BLBCs, in Turkish population. Five hundred invasive were reviewed for several immunostained oestrogen progesterone receptors, c-ERB-B2, cytokeratin5/6, cytokeratin14, vimentin...

10.1186/1746-1596-7-145 article EN cc-by Diagnostic Pathology 2012-10-20

Objectives The aims of this study are to evaluate expressions Ki67, RacGAP1 (MgcRacGAP) and topoisomerase 2 alpha (TOP2a), the markers related with cell proliferation that have been proposed affect prognosis in literature correlate results clinicopathological parameters breast cancer patients. Methods RacGAP1, TOP2a antibodies were applied immunohistochemically tissue micrarray blocks 457 female correlated clinical, prognostic, histopathological features, other immunohistochemical findings...

10.1177/1066896916653211 article EN International Journal of Surgical Pathology 2016-06-10

Abstract Background: In support of Project LUNGMARK, LUNGBANK was established as a pioneering biorepository dedicated to lung cancer. Designed for streamlined biospecimen handling, it employs high-volume technologies secure high-quality samples. Fortified with robust data management, efficiently integrates diverse datasets. This strategic infrastructure positions more than repository; operates sophisticated platform advanced cancer research, amplifying the potential meaningful discoveries....

10.21203/rs.3.rs-3816689/v1 preprint EN cc-by Research Square (Research Square) 2024-01-24

Group 2 innate lymphoid cells (ILC2) can be activated by interleukin (IL)-33 or IL-25. IL-25-activated ILC2 help protect the host against helminth infection while exacerbating allergic-like inflammation and tissue damage in lung. In context of cancer, IL-33-activated were found to bear anti-tumoral functions lung cancer promoted tumorigenesis colorectal cancer. The role remains addressed.We examined overall survival human non-small cell (NSCLC) patients according IL25 expression as well...

10.3389/fimmu.2023.1244437 article EN cc-by Frontiers in Immunology 2023-09-15

Lymph node involvement is an important prognostic factor in patients with gastric cancer. The aim of this study was to determine the significance metastatic lymph ratio (MLNR) and compare it number metastasis pN3 cancer.We retrospectively analyzed 207 cancer who had undergone radical gastrectomy. Prognostic factors MLNR were evaluated by univariate multivariate analysis.An 0.75 found be best cut-off value prognosis (p = 0.001). significantly higher large-sized undifferentiated tumors,...

10.1159/000496746 article EN Oncology Research and Treatment 2019-01-01

Cervical carcinoma is one of the frequently seen cancers in world and our country, develops from precursor lesions. These lesions are analyzed by pathologists so that diagnosis disease can be made. In this study, a system performs automatic detection pre-cancerous was performed using convolutional neural networks (CNNs). training phase, lesion recognition performance proposed has reached 92%. Thereafter, whole image segmented 60 × pixel tiles during phase. After all, were with 81.71% Dice...

10.1109/siu.2017.7960459 article EN 2022 30th Signal Processing and Communications Applications Conference (SIU) 2017-05-01

Programmed death-ligand 1 (PD-L1) is suggested to be a predictive biomarker in non-small-cell lung carcinoma (NSCLC). However, the differential expression of PD-L1 primary tumor vs. synchronous metastases, especially brain metastasis (BM), remains unclear. This study assessed concordance on cells and infiltrating lymphocytes (TILs) CD8+ TIL intensity between tumors BMs from 24 NSCLC patients. PD-L1, CD3, CD8 positivity was determined by immunohistochemistry (IHC). scoring based proportion...

10.17305/bjbms.2019.4474 article EN Bosnian Journal of Basic Medical Sciences 2019-12-28

A subungual exostosis (SE) is a bony overgrowth that permanently attached to the tip of distal phalanx. Its pathology differs from osteocartilaginous exostoses in it mainly involves normal bone, which may present beneath toenail or on sides toe. This retrospective study aimed report results surgical treatment when diagnosis SE was delayed; condition initially considered be another affecting different nail terminal toe.A total 17 patients (12 female, five male) were included study. All...

10.11622/smedj.2015180 article EN Singapore Medical Journal 2015-12-14

The current study was designed to assess the response treatment, as well clinical and survival outcomes, across different breast cancer subtypes in patients who underwent neoadjuvant chemotherapy (NAC). From 2014 2019, a total of 139 were histologically confirmed have cancer, NAC, subsequently received axillary surgery, retrospectively included this study. rates pathological complete (pCR) NAC significantly higher for HER2-positive triple-negative than luminal A HER2-negative (p = 0.013)....

10.1080/1120009x.2024.2314830 article EN Journal of Chemotherapy 2024-02-13

Backround: The purpose of this study was to evaluate the outcomes different radiotherapy techniques used in routine clinical practice for radical treatment hypopharyngeal cancer and assess improvements over last few decades. Methods: We compared patients with squamous cell carcinoma treated curative (RT) or chemoradiotherapy between January 1992 December 2020, using 2D-RT, 3D-CRT/IMRT, VMAT techniques. A retrospective analysis conducted on eighty-one cancer. Results: median follow-up time 26...

10.20944/preprints202407.1891.v1 preprint EN 2024-07-24

Prostate adenocarcinoma is the most common malignancy and second leading cause of cancer related deaths in men. Testicular liposarcomas are uncommon soft tissue neoplasms. We report coexistence prostate testicular liposarcoma a 69 year-old-man because while orchiectomy endications decreasing day by day, these malignancies should not be missed.

10.1186/1757-1626-3-27 article EN cc-by Cases Journal 2010-01-14

Schistosomiasis is a rare condition in Turkey but remains second most prevelant parasitic infestation worldwide.A 67-years old male patient admitted to hospital with macroscopic hematuria. Bladder tumor was diagnosed and referred our department for the treatment. Transurethral resection of bladder performed pathological examination revealed high-grade papillary urothelial carcinoma Schistosoma mansoni eggs. The used praziquantel 40mg orally treatment intravesical immunotherapy applied 6...

10.1016/j.ijscr.2015.05.038 article EN International Journal of Surgery Case Reports 2015-01-01

This study aims at evaluating the endometrial receptivity in uterus of pregnant rats exposed to nicotine via examination integrin expression by immunohistochemical effect.In this study, 16 healthy were divided into two groups control and each comprising eight rats. The randomised group given a certain amount before during pregnancy. Integrin was detected all staining. effect exposure on embryo implantation immunohistochemically pathologically evaluated.Comparison both revealed no difference...

10.1080/14767058.2016.1265499 article EN The Journal of Maternal-Fetal & Neonatal Medicine 2016-11-24
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