Joseph R. Freitas

ORCID: 0000-0003-3104-6282
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About
Contact & Profiles
Research Areas
  • Viral Infections and Vectors
  • Mosquito-borne diseases and control
  • Acute Lymphoblastic Leukemia research
  • SARS-CoV-2 and COVID-19 Research
  • Viral Infections and Outbreaks Research
  • COVID-19 Clinical Research Studies
  • Autoimmune and Inflammatory Disorders Research
  • Gene expression and cancer classification
  • Epigenetics and DNA Methylation
  • SARS-CoV-2 detection and testing
  • Respiratory viral infections research
  • Molecular Biology Techniques and Applications
  • HIV Research and Treatment
  • Influenza Virus Research Studies
  • Chronic Lymphocytic Leukemia Research
  • Acute Myeloid Leukemia Research
  • Interstitial Lung Diseases and Idiopathic Pulmonary Fibrosis
  • Chronic Myeloid Leukemia Treatments
  • CRISPR and Genetic Engineering
  • Viral Infections and Immunology Research
  • Psoriasis: Treatment and Pathogenesis
  • Immune cells in cancer
  • Lung Cancer Treatments and Mutations
  • Biomarkers in Disease Mechanisms
  • Immune responses and vaccinations

Griffith University
2017-2024

Global Virus Network
2023

The Kids Research Institute Australia
2005-2009

Children's Cancer and Leukaemia Group
2005-2008

The University of Western Australia
2006-2007

Hospital de São João
1997

The recent emergence of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2), the underlying cause Disease 2019 (COVID-19), has led to a worldwide pandemic causing substantial morbidity, mortality, and economic devastation. In response, many laboratories have redirected attention SARS-CoV-2, meaning there is an urgent need for tools that can be used in unaccustomed working with coronaviruses. Here we report range SARS-CoV-2 research. First, describe facile single plasmid reverse...

10.1371/journal.pbio.3001091 article EN cc-by PLoS Biology 2021-02-25

The use of microarray technology to assess gene expression levels is now widespread in biology. validation results using independent mRNA quantitation techniques remains a desirable element any experiment. To facilitate the comparison data between laboratories it essential that methodologies be critically examined. We have assessed correlation scores obtained for 48 human genes oligonucleotide microarrays and same measured by quantitative real-time RT-PCR (qRT-PCR). Correlations with qRT-PCR...

10.1186/1471-2164-6-59 article EN cc-by BMC Genomics 2005-04-27

Glucocorticoids (GCs) are among the most important drugs for acute lymphoblastic leukaemia (ALL), yet despite their clinical importance, exact mechanisms involved in GC cytotoxicity and development of resistance remain uncertain. We examined baseline profile a panel T-ALL cell lines to determine factors that contribute without prior drug selection. Transcriptional profiling indicated is associated with proliferative phenotype involving upregulation glycolysis, oxidative phosphorylation,...

10.1038/sj.bjc.6605072 article EN cc-by-nc-sa British Journal of Cancer 2009-05-12

SARS-CoV-2 variants, with the threat of increased transmissibility, infectivity, and immune escape, continue to emerge as COVID-19 pandemic progresses. Detailing pathogenesis disease caused by such Delta, is essential better understand clinical emerging variants associated disease.

10.1128/mbio.00683-22 article EN mBio 2022-04-14

A Bronquiolite Viral Aguda (BVA) é uma infecção respiratória frequente em lactentes, sendo o Vírus Sincicial Respiratório (VSR) principal agente etiológico. doença pode evoluir para quadros graves, exigindo hospitalização, especialmente grupos de risco. O diagnóstico clínico, com avanços no uso da PCR. tratamento suporte, e novas estratégias, como imunoprofilaxia, estão estudadas. Pesquisas indicam possível relação entre BVA doenças respiratórias futuras, reforçando a necessidade estratégias...

10.36557/2674-8169.2025v7n3p1181-1190 article PT cc-by Brazilian Journal of Implantology and Health Sciences 2025-03-11

A síndrome metabólica é um conjunto de condições que aumentam o risco doenças cardiovasculares e diabetes tipo 2, caracterizada por obesidade abdominal, resistência à insulina, hipertensão dislipidemia. gestão eficaz envolve intervenções nutricionais, atividade física, farmacoterapia suporte psicológico. adoção mudanças no estilo vida, como dieta equilibrada exercícios, melhora a sensibilidade insulina controle da pressão arterial. O objetivo deste estudo analisar estratégias...

10.36557/2674-8169.2025v7n3p1466-1474 article PT cc-by Brazilian Journal of Implantology and Health Sciences 2025-03-17

Summary Despite significant improvements in the treatment of childhood acute lymphoblastic leukaemia (ALL), prognosis for relapsing patients remains poor. The aim this study was to generate a transcriptional profile relapsed ALL increase our understanding mechanisms involved therapy failure. RNA extracted from 11 pairs cryopreserved pre‐B bone marrow specimens taken same at diagnosis and relapse, analysed using HG‐U133A microarrays. Relapse overexpressed genes that are with cell growth...

10.1111/j.1365-2141.2005.05785.x article EN British Journal of Haematology 2005-10-07

Arthritogenic alphaviruses are positive-strand RNA viruses that cause debilitating musculoskeletal diseases affecting millions worldwide. A recent discovery identified the four-and-a-half-LIM domain protein 1 splice variant (FHL1A) as a crucial host factor interacting with hypervariable (HVD) of chikungunya virus (CHIKV) nonstructural 3 (nsP3). Here, we show acute and chronic disease in humans correlates elevated levels FHL1. We generated FHL1-/- mice, which when infected CHIKV or...

10.1038/s41467-023-42330-2 article EN cc-by Nature Communications 2023-10-26

To develop COVID-19 countermeasures, powerful research tools are essential. We produced a SARS-COV-2 reverse genetic (RG) infectious clone toolkit that will benefit variety of investigations.

10.1128/mbio.00819-21 article EN cc-by mBio 2021-04-19

Our previous investigation of the nucleolar localisation sequence (NoLS) chikungunya virus (CHIKV) capsid protein demonstrated role in CHIKV virulence. Mutating NoLS led to development a unique live-attenuated vaccine candidate, termed CHIKV-NoLS. CHIKV-NoLS-immunised mice developed long-term immunity from infection after single dose. To further evaluate CHIKV-NoLS attenuation and suitability as vaccine, we examined footpad inoculated for underlying CHIKV-NoLS-induced immunopathology by...

10.3390/vaccines7010002 article EN cc-by Vaccines 2018-12-22

Barmah Forest virus (BFV) is a mosquito-borne that causes arthralgia with accompanying rash, fever, and myalgia in humans. The mainly found Australia has caused outbreaks associated significant health concerns. As the sole representative of complex within genus

10.1128/mbio.00993-24 article EN cc-by mBio 2024-07-02

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2, COVID-19) continues its significant health and economic impact globally. Despite the success of spike-protein vaccines in preventing severe disease, long-lasting protection against emerging variants prevention breakthrough infections transmission remain elusive. We generate an intranasal live-attenuated SARS-CoV-2 vaccine, CDO-7N-1, using codon deoptimization. CDO-7N-1 shows highly attenuated replication minimal or no lung...

10.1038/s41467-024-51535-y article EN cc-by-nc-nd Nature Communications 2024-08-26

Summary In recent years microarrays have been used extensively to characterize gene expression in acute lymphoblastic leukaemia (ALL). Few studies, however, analysed normal haematopoietic cell populations identify altered ALL. We oligonucleotide compare the profile of paediatric precursor‐B (pre‐B) ALL specimens with two control populations, CD34 + and CD19 IgM − cells, focus on genes linked leukemogenesis. A set eight was identified a ninefold higher average compared cells. All these were...

10.1111/j.1365-2141.2007.06739.x article EN British Journal of Haematology 2007-08-23

Arthritogenic alphaviruses cause debilitating inflammatory disease, and current therapies are restricted to palliative approaches. Here, we show that following monocyte-driven muscle inflammation, tissue recovery is associated with the accumulation of CX 3 CR1 + macrophages in muscle. Modulating monocyte infiltration using immune-modifying microparticles (IMP) reduced damage inflammation enhanced formation repair-associated This shows modulating key effectors viral can alter outcome disease...

10.1128/mbio.03353-19 article EN cc-by mBio 2020-02-29

Chikungunya virus (CHIKV) is the causative pathogen of chikungunya fever, a mosquito-borne viral disease causing highly debilitating arthralgia that can persist for months and progress to chronic arthritis. Our previous studies have identified CHIKV live-attenuated vaccine candidate CHIKV-NoLS. Like most vaccines, attenuated replication CHIKV-NoLS has potential limit scalable production. To overcome production limits, as well other drawbacks we developed an in vivo liposome-RNA delivery...

10.3389/fimmu.2020.00304 article EN cc-by Frontiers in Immunology 2020-03-05

Arthritogenic alphaviruses are mosquito-borne viruses that a major cause of infectious arthropathies worldwide, and recent outbreaks chikungunya virus Ross River (RRV) infections highlight the need for robust intervention strategies. Alphaviral arthritis can persist months after initial acute disease, is mediated by cellular immune responses. A common strategy to limit inflammation pathology dampen overwhelming inflammatory responses modulating proinflammatory cytokine pathways. Here, we...

10.1371/journal.ppat.1010185 article EN cc-by PLoS Pathogens 2022-02-10

Summary The in vitro efficacies of three new drugs – clofarabine (CLOF), nelarabine (NEL) and flavopiridol (FP) were assessed a panel acute lymphoblastic leukaemia (ALL) cell lines. 50% inhibitory concentration (IC50) for CLOF across all lines was 188‐fold lower than that NEL. B‐lineage, but not T‐lineage lines, >7‐fold more sensitive to cytosine arabinoside (ARAC). NEL IC50 25‐fold 113‐fold higher ARAC T‐ respectively. T‐ALL cells eightfold B‐lineage there considerable overlap. FP potent...

10.1111/j.1365-2141.2007.06527.x article EN British Journal of Haematology 2007-03-23

Cell lines are important models for drug resistance in acute lymphoblastic leukaemia (ALL), but often criticised as being unrepresentative of primary disease. There also doubts regarding the authenticity many lines. We have characterised a panel ALL cell growth and compared data with that published patient specimens. In contrast to convention highly proliferative, those established our laboratory grow at rates similar estimates leukaemic cells vivo (doubling time 53–442 h). Authenticity was...

10.1038/sj.bjc.6603447 article EN cc-by-nc-sa British Journal of Cancer 2006-11-21

Summary Despite high cure rates 25% of children with acute lymphoblastic leukaemia (ALL) relapse and have dismal outcome. Crucially, many are currently stratified as standard risk (SR) additional markers to improve patient stratification required. Here we used diagnostic bone marrow specimens from 101 pre‐B ALL examine the use gene expression profiles (GEP) predictors long‐term clinical Patients were divided into two cohorts for model development validation based on availability specimen...

10.1111/j.1365-2141.2008.06981.x article EN British Journal of Haematology 2008-02-21

Arthritogenic alphaviruses, such as Ross River virus (RRV) and chikungunya (CHIKV), particularly affect joints of the extremities can lead to debilitating potentially chronic polyarthritis/polyarthralgia. The innate immune response host plays a crucial role in inducing proinflammatory factors, leading tissue destruction bone loss joints. This study was performed assess how inhibition interleukin-1β (IL-1β) signaling using clinical rheumatoid arthritis drug anakinra influences mice with...

10.1002/art.40856 article EN Arthritis & Rheumatology 2019-02-12

Summary In the last four decades survival of patients with newly diagnosed childhood T‐cell acute lymphoblastic leukaemia (T‐ALL) has improved dramatically. sharp contrast, relapsed T‐ALL continues to confer a dismal prognosis. We sought determine if gene expression profiling could uncover signature outcome for children T‐ALL. Using 12 patient specimens obtained before therapy started, we examined profile by oligonucleotide microarrays. identified three genes, CFLAR , NOTCH2 and BTG3 whose...

10.1111/j.1365-2141.2007.06576.x article EN British Journal of Haematology 2007-04-19

Arthritogenic alphaviruses are transmitted via mosquito bites through the skin, potentially causing debilitating diseases. Our understanding of how viral infection starts in skin and virus systemically disseminates to cause disease remains limited.

10.1128/jvi.00999-22 article EN Journal of Virology 2022-08-24

There is an unmet medical need for effective anti-inflammatory agents the treatment of acute and post-acute lung inflammation caused by respiratory viruses. The semi-synthetic polysaccharide, Pentosan polysulfate sodium (PPS), inhibitor NF-kB activation, was investigated its systemic local effects in a mouse model influenza virus A/PR8/1934 (PR8 strain) mediated infection. Immunocompetent C57BL/6J mice were infected intranasally with sublethal dose PR8 treated subcutaneously 3 or 6 mg/kg PPS...

10.3389/fimmu.2023.1030879 article EN cc-by Frontiers in Immunology 2023-02-09
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