Yuji Miyamoto

ORCID: 0000-0003-4247-1196
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About
Contact & Profiles
Research Areas
  • Mycobacterium research and diagnosis
  • Tuberculosis Research and Epidemiology
  • Leprosy Research and Treatment
  • Infectious Diseases and Mycology
  • Infectious Diseases and Tuberculosis
  • Fungal Infections and Studies
  • Carbohydrate Chemistry and Synthesis
  • Genomics and Phylogenetic Studies
  • Immune responses and vaccinations
  • Immunodeficiency and Autoimmune Disorders
  • Ginseng Biological Effects and Applications
  • Microbial Natural Products and Biosynthesis
  • Cancer-related molecular mechanisms research
  • Quinazolinone synthesis and applications
  • Actinomycetales infections and treatment
  • Redox biology and oxidative stress
  • Pharmacological Effects of Natural Compounds
  • Nitric Oxide and Endothelin Effects
  • Glycosylation and Glycoproteins Research
  • Immunotherapy and Immune Responses
  • Helicobacter pylori-related gastroenterology studies
  • Immune Cell Function and Interaction
  • Microbial Metabolism and Applications
  • Escherichia coli research studies
  • Neutrophil, Myeloperoxidase and Oxidative Mechanisms

National Institute of Infectious Diseases
2016-2025

Teikyo University
2018

Hokkaido Pharmaceutical University
2018

National Institutes of Health
2004-2011

Czech Academy of Sciences, Institute of Microbiology
2010

Nara University
2008

Osaka University
2003

Hiroshima University
1998

Emmanuelle Cambau Paul Saunderson Masao Matsuoka Stewart T. Cole M. Kai and 95 more Phillip Noel Suffys Patrícia Sammarco Rosa Diana L. Williams U D Gupta Mallika Lavania Nora Cardona‐Castro Yuji Miyamoto Deanna A. Hagge Aparna Srikantam W. Hongseng A. Indropo Varalakshmi Vissa Roch Christian Johnson B Cauchoix Vijay Pannikar E Cooreman Venkata Rao Pemmaraju Laura Gillini A. Kriswamati Abdul Rahim Al-Samie Issoufou Ahamed Alexandre Tiendrébéogo AmriMiraju Kingalu Andriamira Randrianantoandro Anil Kumar Aurélie Chauffour Aye Aye Win Basudev Pandey Chhavi Agrawal Christiana Widaningrum Christine Schmotzer Christophe Kafando Chuda Mani Bhandari Cynthia Sema Dhammika Vidanagama David M. Scollard Demmissew Beyene Eliane Faria Morelo Elizabeth Dizaneh Kassa Enerantien Benoit Ramarolahy Eric Claco Ernesto ES. Villalon Famoussa Sidibe Fatoumata Sakho Fomba Abdoulaye Francisco F. Guilengue Fransesca Gajete Gadde Rajan Babu Moussa Gado Garib Das Thakur Gemma Cabanos Gouressi Sock Greame Clugston Hany Zaidy Haruo Watanabe H.J.S. Kawuma Irene Mallari Isabella Maria Bernandes Goulart Issoufou Ahamed J. Subbanna Jean Gabin Houzeo Jean Norbert Mputu Luengu Jeanne Bertolli Jonathan Lloyd-Owen Jorge Matheu José Pereira Brunelli Juan Camilo Beltrán Alzate Kapil Dev Neupane Katsunori Osuga Kazuko Yamaguchi‐Shinozaki Khalid Azam Khin Maung Lin Kodia Momoudu Kyaw Kyaw Landry Bide Le Huu Doanh Ley Huyen My Mahesh Shah Mamadou Kodio Mamadou Sidibe Mannam Ebenezer Maria Aparecida de Faria Grossi Marivic Balagon Marlience Canlonon Masahiko Makino Maung Maung Htoo Md Jamsheed Ahmed Mintsey-mi-Makuth Nadine Florenda O. Roferos Hana Krismawati Mya Thida Myo Thet Htoon Kapil Dev Neupane Nhu Ha Nguyen Phuc NguyenThi Hai Van

ObjectivesAntimicrobial resistance (AMR) is a priority for surveillance in bacterial infections. For leprosy, AMR has not been assessed because Mycobacterium leprae does grow vitro. We aim to obtain data using molecular detection of genes and conduct prospective open survey antileprosy drugs countries where leprosy endemic through WHO network.MethodsFrom 2009 2015, multi-bacillary cases at sentinel sites 19 were studied rifampicin, dapsone ofloxacin by PCR sequencing the...

10.1016/j.cmi.2018.02.022 article EN cc-by Clinical Microbiology and Infection 2018-03-01

Leprosy is a chronic human disease caused by the yet-uncultured pathogen Mycobacterium leprae. Although readily curable with multidrug therapy (MDT), over 200,000 new cases are still reported annually. Here, we obtain M. leprae genome sequences from DNA extracted directly patients' skin biopsies using customized protocol. Comparative and phylogenetic analysis of 154 genomes 25 countries provides insight into evolution antimicrobial resistance, uncovering lineages phylogeographic trends, most...

10.1038/s41467-017-02576-z article EN cc-by Nature Communications 2018-01-18

ABSTRACT Mycobacterium ulcerans , a slow-growing nontuberculous mycobacterium, causes Buruli ulcer, neglected tropical disease. Distinguishing M. from related species, including marinum poses challenges with respect to making accurate identifications. In this study, we developed rapid and simple identification method based on mycobacterial lipid profiles used matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) analyze the of ( n = 35) 19) isolates....

10.1128/jcm.01400-24 article EN cc-by Journal of Clinical Microbiology 2025-01-27

Multidrug therapy has effectively reduced the number of leprosy cases in world. However, rate reduction decelerated over years, giving early detection Mycobacterium leprae and epidemiological study relapse renewed relevance attempts to eliminate disease.A molecular survey for drug-resistant M. was conducted central highland regions Vietnam. A total 423 samples taken from patients, including 83 patients with new cases, 321 receiving treatment, 19 relapse, were studied mutations relating drug...

10.1093/cid/ciq217 article EN Clinical Infectious Diseases 2011-02-02

Although leprosy (Hansen's disease) is one of the oldest known diseases, pathogenicity Mycobacterium leprae (M. leprae) remains enigmatic. Indeed, cell wall components responsible for immune response against M. are as yet largely unidentified. We reveal here phenolic glycolipid-III (PGL-III) an leprae-specific ligand receptor Mincle. PGL-III a scarcely present trisaccharide intermediate in biosynthetic pathway to PGL-I, abundant and characteristic glycolipid. Using activity-based...

10.1021/acscentsci.3c00040 article EN cc-by ACS Central Science 2023-07-12

Thioredoxin reductase (TR), a flavoprotein, catalyzes the reduction of oxidized thioredoxin in NADPH-dependent manner, and contains selenocysteine residue near C-terminus. TR plays an important role protecting against oxidative stress regulating cell growth death. Constitutive expression has been observed several types mammalian body, including endothelial cells. The latter are continually exposed to both exogenous endogenous sources nitric oxide (NO) NO-derived species. Reactive nitrogen...

10.1515/bc.2002.070 article EN Biological Chemistry 2002-01-12

Glycopeptidolipids (GPLs) are major components present on the outer layers of cell walls several nontuberculous mycobacteria. GPLs antigenic molecules and have variant oligosaccharides in mycobacteria such as Mycobacterium avium. In this study, we identified four genes (gtf1, gtf2, gtf3, gtf4) genome smegmatis. These were independently inactivated by homologous recombination M. smegmatis, structures from each gene disruptant analyzed. Thin-layer chromatography, gas chromatography-mass...

10.1128/jb.188.1.86-95.2006 article EN Journal of Bacteriology 2005-12-13

Mycobacterium ulcerans is the causative agent of Buruli ulcer (BU), a WHO-defined neglected tropical disease. All Japanese BU isolates have shown distinct differences from prototype and are categorized as M. subspecies shinshuense. During repeated sub-culture, we found that some shinshuense colonies were non-pigmented whereas others pigmented. Whole genome sequence analysis revealed did not harbor giant plasmid, which encodes elements needed for mycolactone toxin biosynthesis. Moreover, was...

10.1038/s41598-018-26425-1 article EN cc-by Scientific Reports 2018-05-22

Nutritional status contributes to the regulation of immune responses against pathogens, and malnutrition has been considered as a risk factor for tuberculosis (TB). Mycobacterium (Mtb), causative agent TB, can modulate host lipid metabolism induce accumulation in macrophages, where bacilli adopt dormant phenotype. In addition, serum components play dual roles protection from Mtb infection. We analyzed relationship between nutritional humoral response TB patients. found that HDL levels are...

10.1371/journal.pone.0237062 article EN cc-by PLoS ONE 2020-08-06

Abstract A Japanese male in his 30s with no underlying medical condition presented painless nodules after being bitten by a dog during stay Bali, Indonesia, 7 years earlier. He was referred to our department multiple ulcers, nodules, and masses on the right leg. The final diagnosis mycetoma caused Nocardia vulneris , which may have been exacerbated colonization of Candida parapsilosis C. tropicalis as these yeasts were isolated culture from tissue. Treatment minocycline hydrochloride...

10.1111/1346-8138.17206 article EN The Journal of Dermatology 2024-04-01

Mycobacterium avium complex (MAC) is a non-tuberculous mycobacterium widely distributed in the environment. Even though MAC infection increasing older women and immunocompromised patients, to our knowledge there has been no comprehensive analysis of MAC-infected host-cell transcriptome—and particularly long non-coding RNAs (lncRNAs). By using vitro- cultured primary mouse bone-marrow-derived macrophages (BMDMs) Cap gene expression, we analyzed transcriptional kinetic landscape macrophage...

10.3389/fimmu.2024.1374437 article EN cc-by Frontiers in Immunology 2024-04-22

We constructed a recombinant Mycobacterium bovis bacillus Calmette-Guérin (BCG-Delta UT) that lacks urease, providing acidic intraphagosomal conditions to drive an effective human immune T-cell response. BCG-Delta UT-infected macrophages stimulated autologous CD4+ T cells more efficiently than parent BCG-infected macrophages. For further activation, required pretreatment with exogenous granulocyte-macrophage colony-stimulating factor or costimulation either CD40 ligand interferon-gamma. By...

10.1111/j.1574-695x.2008.00407.x article EN FEMS Immunology & Medical Microbiology 2008-04-09

Abstract Mycobacterium lepromatosis , an independent species from leprae has been found to be a causative agent for diffuse lepromatous leprosy ( DLL ) in Mexico, but remains poorly studied. Here, the drug resistance‐determining regions DRDR of folP1, rpoB and gyrA (conferring resistance dapsone, rifampicin quinolone, respectively) M. patients Mexico were characterized. No mutations or silent at previously characterized major sites . However, non‐synonymous mutation was codon 54 between two...

10.1111/1346-8138.13483 article EN The Journal of Dermatology 2016-06-27

Japan is one of the rare non-tropical countries with documented cases Buruli ulcer (BU). Mycobacterium ulcerans subsp. shinshuense has been identified as causative agent. The first report BU in dates back to 1982, sporadic reports thereafter. Recently, number on increase, and 50 (57.7%) are from past decade alone, out a total 87 reported date. Japan's well-developed healthcare facilities play crucial role enabling detailed investigations providing appropriate treatment for patients,...

10.1111/1346-8138.17483 article EN cc-by The Journal of Dermatology 2024-09-30

Among non-tuberculous mycobacteria (NTM), the Mycobacterium simiae complex is one of largest groups, consisting 18 species slow-growing mycobacteria. In 2009, a case NTM-associated infectious skin disease was reported in Shiga Prefecture, Japan. The patient presented with scattered nodules on chest, back and extremities, an M. simiae-like organism isolated from biopsy specimens obtained these lesions. Based several assessments, including multiple-gene analyses, biochemical characterization...

10.1099/ijsem.0.002845 article EN INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 2018-06-25

A serological diagnostic test using phenolic glycolipid-I (PGL-I) developed in the 1980s is commercially available, but method still inefficient detecting all forms of leprosy. Therefore, more-specific and -reliable methods have been sought. We characterized major membrane protein II (MMP-II) as a candidate for new antigen. In this study, we evaluated effectiveness enzyme-linked immunosorbent assay (ELISA) MMP-II antigen (MMP-II ELISA) antibodies leprosy patients patients' contacts...

10.1128/cvi.00148-08 article EN Clinical and Vaccine Immunology 2008-10-23

Mycobacterium bovis bacillus Calmette-Guérin (BCG) is the only tuberculosis (TB) vaccine currently available, but its efficacy against adult pulmonary TB remains controversial. BCG induces specific immune responses to mycobacterial antigens and may elicit protective immunity TB. a major public health problem, especially among elderly, yet of in elderly unknown. We investigated ability vaccination prevent young (6-week-old), middle-aged (18-month-old), old (60-month-old) guinea pigs....

10.1128/cvi.00190-10 article EN Clinical and Vaccine Immunology 2010-08-05

Mycobacterium pseudoshottsii is a fish pathogen that produces mycolactone. Here, we report the complete chromosome sequence of type strain M. (JCM 15466). The will represent essential data for future phylogenetic and comparative genome studies mycolactone-producing mycobacteria.

10.1128/genomea.01363-17 article EN Genome Announcements 2017-11-30

Mycobacterium marinum is a slowly growing, broad-host-range mycobacterial species. Here, we report the complete genome sequence of type strain that was isolated from tubercles diseased fish. This will provide essential information for future taxonomic and comparative studies its relatives.

10.1128/genomea.00397-18 article EN Genome Announcements 2018-05-16

For the establishment of a diagnostic tool for mycobacterial species, part dnaA gene was amplified and sequenced from clinically relevant 27 species as well 49 clinical isolates. Sequence variability in segment allowed differentiation all except Mycobacterium tuberculosis, africanum microti, which had identical sequences. Partial sequences isolates belonging to three frequently isolated revealed very high intraspecies similarity, with range 96.0-100%. Based on sequences, species-specific...

10.1111/j.1574-6968.2005.00031.x article EN FEMS Microbiology Letters 2005-11-25
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